ARB
Public Member Functions | Public Attributes | List of all members
ED4_terminal Class Referenceabstract

#include <ed4_class.hxx>

Inheritance diagram for ED4_terminal:
Inheritance graph
[legend]
Collaboration diagram for ED4_terminal:
Collaboration graph
[legend]

Public Member Functions

 DECLARE_DUMP_FOR_BASECLASS (ED4_terminal, ED4_base)
 
void changed_by_database () OVERRIDE
 
void deleted_from_database () OVERRIDE
 
void Show (bool refresh_all, bool is_cleared) OVERRIDE
 
virtual void draw ()=0
 
bool calc_bounding_box () FINAL_OVERRIDE
 
ED4_returncode draw_drag_box (AW_pos x, AW_pos y, GB_CSTR text=NULp, int cursor_y=-1)
 
void request_refresh (int clear=1) FINAL_OVERRIDE
 
void resize_requested_children () OVERRIDE
 
void update_requested_children () OVERRIDE
 
void delete_requested_children () OVERRIDE
 
void Delete () OVERRIDE
 
ED4_returncode event_sent_by_parent (AW_event *event, AW_window *aww) OVERRIDE
 
ED4_returncode kill_object ()
 
ED4_base * search_ID (const char *id) OVERRIDE
 
char * resolve_pointer_to_string_copy (int *str_len=NULp) const FINAL_OVERRIDE
 
const char * resolve_pointer_to_char_pntr (int *str_len=NULp) const FINAL_OVERRIDE
 
void remove_callbacks () FINAL_OVERRIDE
 
GB_ERROR write_sequence (const char *seq, int seq_len)
 
void scroll_into_view (ED4_window *ed4w)
 
bool setCursorTo (ED4_cursor *cursor, int seq_pos, bool unfoldGroups, ED4_CursorJumpType jump_type)
 
bool is_hidden () const FINAL_OVERRIDE
 
 ED4_terminal (const ED4_objspec &spec_, GB_CSTR id, AW_pos width, AW_pos height, ED4_manager *parent)
 
 ~ED4_terminal () OVERRIDE
 
- Public Member Functions inherited from ED4_base
void draw_bb (int color)
 
 DECLARE_DUMP_FOR_ROOTCLASS (ED4_base)
 
GBDATA * get_species_pointer () const
 
void set_species_pointer (GBDATA *gbd)
 
bool has_callback () const
 
int adjust_clipping_rectangle ()
 
void resize_dynamic ()
 
ED4_returncode clear_background (int color=0)
 
void set_links (ED4_base *width_ref, ED4_base *height_ref)
 
void set_both_links (ED4_base *ref)
 
void set_property (ED4_properties prop)
 
void clr_property (ED4_properties prop)
 
bool has_property (ED4_properties prop) const
 
void calc_rel_coords (AW_pos *x, AW_pos *y)
 
void calc_world_coords (AW_pos *x, AW_pos *y) const
 
const AW::Position & calc_world_coords () const
 
void update_world_coords_cache () const
 
AW::Rectangle get_win_area (ED4_window *ed4w) const
 
void request_resize ()
 
void request_resize_of_linked ()
 
void resize_requested_by_link (ED4_base *link)
 
void set_update ()
 
virtual ARB_ERROR route_down_hierarchy (const ED4_route_cb &cb)
 
int calc_group_depth ()
 
void check_all ()
 
short in_border (AW_pos abs_x, AW_pos abs_y, ED4_movemode mode)
 
ED4_returncode set_width ()
 
ED4_AREA_LEVEL get_area_level (ED4_multi_species_manager **multi_species_manager=NULp) const
 
ED4_manager * get_parent (ED4_level lev) const
 
void unlink_from_parent ()
 
bool has_parent (ED4_manager *Parent)
 
bool is_child_of (ED4_manager *Parent)
 
ED4_group_manager * is_in_folded_group () const
 
char * get_name_of_species ()
 
ED4_terminal * get_next_terminal ()
 
ED4_terminal * get_prev_terminal ()
 
void generate_configuration_string (GBS_strstruct &buffer)
 
const ED4_terminal * get_consensus_relevant_terminal () const
 
 ED4_base (const ED4_objspec &spec_, GB_CSTR id, AW_pos width, AW_pos height, ED4_manager *parent)
 
virtual ~ED4_base ()
 
int is_terminal () const
 
int is_text_terminal () const
 
int is_species_name_terminal () const
 
int is_sequence_info_terminal () const
 
int is_sequence_terminal () const
 
int is_orf_terminal () const
 
int is_pure_text_terminal () const
 
int is_columnStat_terminal () const
 
int is_bracket_terminal () const
 
int is_spacer_terminal () const
 
int is_line_terminal () const
 
int is_flag_header_terminal () const
 
int is_flag_terminal () const
 
int is_manager () const
 
int is_sequence_manager () const
 
int is_multi_name_manager () const
 
int is_name_manager () const
 
int is_multi_species_manager () const
 
int is_multi_sequence_manager () const
 
int is_device_manager () const
 
int is_group_manager () const
 
int is_root_group_manager () const
 
int is_abstract_group_manager () const
 
int is_species_manager () const
 
int is_area_manager () const
 
 E4B_DECL_CASTOP (area_manager)
 
 E4B_DECL_CASTOP (abstract_group_manager)
 
 E4B_DECL_CASTOP (bracket_terminal)
 
 E4B_DECL_CASTOP (columnStat_terminal)
 
 E4B_DECL_CASTOP (consensus_sequence_terminal)
 
 E4B_DECL_CASTOP (device_manager)
 
 E4B_DECL_CASTOP (group_manager)
 
 E4B_DECL_CASTOP (line_terminal)
 
 E4B_DECL_CASTOP (manager)
 
 E4B_DECL_CASTOP (multi_name_manager)
 
 E4B_DECL_CASTOP (multi_sequence_manager)
 
 E4B_DECL_CASTOP (multi_species_manager)
 
 E4B_DECL_CASTOP (name_manager)
 
 E4B_DECL_CASTOP (orf_terminal)
 
 E4B_DECL_CASTOP (pure_text_terminal)
 
 E4B_DECL_CASTOP (root_group_manager)
 
 E4B_DECL_CASTOP (sequence_info_terminal)
 
 E4B_DECL_CASTOP (sequence_manager)
 
 E4B_DECL_CASTOP (sequence_terminal)
 
 E4B_DECL_CASTOP (spacer_terminal)
 
 E4B_DECL_CASTOP (species_manager)
 
 E4B_DECL_CASTOP (species_name_terminal)
 
 E4B_DECL_CASTOP (terminal)
 
 E4B_DECL_CASTOP (text_terminal)
 
 E4B_DECL_CASTOP (flag_header_terminal)
 
 E4B_DECL_CASTOP (flag_terminal)
 
ED4_species_manager * containing_species_manager () const
 
bool is_consensus_manager () const
 
bool is_SAI_manager () const
 
bool is_species_seq_manager () const
 
ED4_species_type get_species_type () const
 
bool inside_consensus_manager () const
 
bool inside_SAI_manager () const
 
bool inside_species_seq_manager () const
 
bool is_consensus_terminal () const
 
bool is_SAI_terminal () const
 
bool is_species_seq_terminal () const
 
bool is_consensus_sequence_terminal () const
 

Public Attributes

struct {
   unsigned int   deleted: 1
 
} tflag
 
long curr_timestamp
 
- Public Attributes inherited from ED4_base
const ED4_objspec & spec
 
ED4_manager * parent
 
ED4_properties dynamic_prop
 
char * id
 
ED4_index index
 
ED4_base * width_link
 
ED4_base * height_link
 
ED4_extension extension
 
ED4_update_info update_info
 
struct {
   unsigned int   hidden: 1
 
} flag
 

Additional Inherited Members

- Static Public Member Functions inherited from ED4_base
static void touch_world_cache ()
 

Detailed Description

Definition at line 1285 of file ed4_class.hxx.

Constructor & Destructor Documentation

ED4_terminal::ED4_terminal ( const ED4_objspec &  spec_,
GB_CSTR  id,
AW_pos  width,
AW_pos  height,
ED4_manager *  parent 
)

Definition at line 702 of file ED4_terminal.cxx.

References curr_timestamp, and tflag.

ED4_terminal::~ED4_terminal ( )

Definition at line 710 of file ED4_terminal.cxx.

References ED4_ROOT, ED4_root::first_window, ED4_cursor::init(), ED4_window::next, and ED4_cursor::owner_of_cursor.

Member Function Documentation

ED4_terminal::DECLARE_DUMP_FOR_BASECLASS ( ED4_terminal  ,
ED4_base   
)
void ED4_terminal::changed_by_database ( )
virtual

Reimplemented from ED4_base.

Definition at line 36 of file ED4_base.cxx.

References curr_timestamp, e4_assert, ED4_alignment_length_changed(), ED4_ROOT, ED4_U_UP, GB_CB_CHANGED, GB_clear_error(), GB_FIND, gb_main, GB_read_clock(), GB_read_int(), GB_read_old_size(), GB_read_old_value(), GB_read_string(), GB_read_type(), GB_search(), GB_STRING, GBT_get_alignment(), ED4_root::get_alignment_name(), ED4_root::get_gb_main(), ED4_base::get_parent(), ED4_base::get_species_pointer(), ED4_base::has_property(), LEV_MULTI_SPECIES, LEV_SPECIES, MAXSEQUENCECHARACTERLENGTH, PROP_CONSENSUS_RELEVANT, request_refresh(), type, and ED4_manager::update_bases_and_rebuild_consensi().

void ED4_terminal::deleted_from_database ( )
virtual

Reimplemented from ED4_base.

Reimplemented in ED4_sequence_terminal, and ED4_text_terminal.

Definition at line 93 of file ED4_base.cxx.

References ED4_base::deleted_from_database().

Referenced by ED4_text_terminal::deleted_from_database(), and ED4_sequence_terminal::deleted_from_database().

void ED4_terminal::Show ( bool  refresh_all,
bool  is_cleared 
)
virtual

Implements ED4_base.

Reimplemented in FINAL_TYPE< SEQTYPE >, and FINAL_TYPE< SEQTYPE >.

Definition at line 690 of file ED4_terminal.cxx.

References ED4_base::adjust_clipping_rectangle(), ED4_update_info::clear_at_refresh, ED4_base::clear_background(), current_device(), draw(), e4_assert, AW_device::pop_clip_scale(), AW_device::push_clip_scale(), ED4_update_info::refresh, and ED4_base::update_info.

virtual void ED4_terminal::draw ( )
pure virtual

Implemented in FINAL_TYPE< SEQTYPE >, ED4_line_terminal, FINAL_TYPE< SEQTYPE >, FINAL_TYPE< SEQTYPE >, FINAL_TYPE< SEQTYPE >, ED4_text_terminal, ED4_bracket_terminal, and FINAL_TYPE< SEQTYPE >.

Referenced by Show().

bool ED4_terminal::calc_bounding_box ( )
virtual

Implements ED4_base.

Definition at line 649 of file ED4_terminal.cxx.

References ED4_base::extension, HEIGHT, ED4_base::height_link, request_refresh(), ED4_base::request_resize_of_linked(), ED4_extension::set_size_does_change(), ED4_extension::size, WIDTH, and ED4_base::width_link.

Referenced by resize_requested_children().

ED4_returncode ED4_terminal::draw_drag_box ( AW_pos  x,
AW_pos  y,
GB_CSTR  text = NULp,
int  cursor_y = -1 
)

Definition at line 311 of file ED4_terminal.cxx.

References ARROW_LENGTH, AW_SCREEN, ED4_base::calc_world_coords(), current_device(), current_ed4w(), ED4_G_DRAG, ED4_R_OK, ED4_ROOT, ED4_base::extension, ED4_root::get_device_manager(), HEIGHT, INFO_TERM_TEXT_YOFFSET, LEV_NONE, AW_device::line(), NULp, ED4_extension::position, PROP_HORIZONTAL, ED4_container::search_target_species(), ED4_extension::size, AW_device::text(), ED4_foldable::world_to_win_coords(), X_POS, and Y_POS.

void ED4_terminal::request_refresh ( int  clear = 1)
virtual

Implements ED4_base.

Definition at line 678 of file ED4_terminal.cxx.

References ED4_base::parent, ED4_manager::refresh_requested_by_child(), ED4_update_info::set_clear_at_refresh(), ED4_update_info::set_refresh(), and ED4_base::update_info.

Referenced by ED4_root::add_to_highlighted(), calc_bounding_box(), changed_by_database(), col_block_refresh_on_seq_term(), ED4_undo_redo(), event_sent_by_parent(), executeKeystroke(), perform_block_operation_on_part_of_sequence(), perform_block_operation_on_whole_sequence(), refresh_highlighted(), remove_callbacks(), ED4_root::remove_from_highlighted(), toggle_helix_for_SAI(), and write_sequence().

void ED4_terminal::resize_requested_children ( )
virtual

Implements ED4_base.

Reimplemented in FINAL_TYPE< SEQTYPE >.

Definition at line 671 of file ED4_terminal.cxx.

References calc_bounding_box(), ED4_base::request_resize(), ED4_update_info::resize, and ED4_base::update_info.

void ED4_terminal::update_requested_children ( )
virtual

Implements ED4_base.

Definition at line 647 of file ED4_terminal.cxx.

void ED4_terminal::delete_requested_children ( )
virtual

Implements ED4_base.

Definition at line 1103 of file ED4_manager.cxx.

References ED4_root::announce_deletion(), ED4_update_info::delete_requested, e4_assert, ED4_ROOT, tflag, ED4_base::unlink_from_parent(), and ED4_base::update_info.

void ED4_terminal::Delete ( )
virtual

Implements ED4_base.

Definition at line 1170 of file ED4_manager.cxx.

References ED4_update_info::delete_requested, ED4_manager::delete_requested_by_child(), ED4_base::parent, tflag, and ED4_base::update_info.

ED4_returncode ED4_terminal::event_sent_by_parent ( AW_event *  event,
AW_window *  aww 
)
virtual

Implements ED4_base.

Definition at line 385 of file ED4_terminal.cxx.

References ED4_root::add_to_highlighted(), ED4_root::alignment_type, AW_BUTTON_LEFT, AW_BUTTON_RIGHT, AW_Keyboard_Press, AW_Keyboard_Release, AW_Mouse_Drag, AW_Mouse_Press, AW_Mouse_Release, ED4_root::aw_root, AW_root::awar(), AWAR_SAI_NAME, AWAR_SPECIES_NAME, AW_event::button, ED4_base::containing_species_manager(), current_cursor(), current_ed4w(), e4_assert, ED4_correctBlocktypeAfterModification(), ED4_M_FREE, ED4_no_dangerous_modes(), ED4_R_BREAK, ED4_R_OK, ED4_ROOT, ED4_setColumnblockCorner(), ED4_SM_INFO, ED4_SM_KILL, ED4_SM_MARK, ED4_SM_MOVE, ED4_trigger_instant_refresh(), ED4_move_info::end_x, ED4_move_info::end_y, GB_AT_DNA, GB_read_flag(), GB_write_flag(), GBT_get_name(), ED4_root::get_device_manager(), ED4_base::get_parent(), AW_window::get_root(), group, ED4_base::has_property(), ED4_base::is_area_manager(), ED4_base::is_bracket_terminal(), ED4_base::is_flag_terminal(), ED4_base::is_sequence_terminal(), ED4_base::is_species_name_terminal(), kill_object(), LEV_GROUP, LEV_MULTI_SPECIES, LEV_NONE, LEV_SPECIES, ED4_container::member(), ED4_container::members(), ED4_move_info::mode, NULp, ED4_move_info::object, ED4_dragNdrop_info::off_x, ED4_dragNdrop_info::off_y, ED4_dragNdrop_info::old_event_y, ED4_dragNdrop_info::old_x, ED4_dragNdrop_info::old_y, ED4_move_info::preferred_parent, PROP_CURSOR_ALLOWED, PV_RefreshWindow(), ED4_root::remove_from_highlighted(), request_refresh(), ED4_cursor::show_clicked_cursor(), ED4_root::species_mode, ED4_multi_species_manager::toggle_selected_species(), AW_event::type, ED4_foldable::world_to_win_coords(), AW_awar::write_string(), AW_event::x, and AW_event::y.

ED4_returncode ED4_terminal::kill_object ( )

Definition at line 290 of file ED4_terminal.cxx.

References aw_message(), ED4_manager::Delete(), ED4_find_MoreSequences_manager(), ED4_R_IMPOSSIBLE, ED4_R_OK, ED4_base::get_parent(), LEV_GROUP, LEV_SPECIES, ED4_base::parent, and remove_from_consensus().

Referenced by event_sent_by_parent().

ED4_base * ED4_terminal::search_ID ( const char *  id)
virtual

Implements ED4_base.

Definition at line 685 of file ED4_terminal.cxx.

References NULp.

char * ED4_terminal::resolve_pointer_to_string_copy ( int *  str_len = NULp) const
virtual

Reimplemented from ED4_base.

Definition at line 133 of file ED4_terminal.cxx.

References ARB_strduplen(), resolve_pointer_to_char_pntr(), and s.

Referenced by add_area_for_gde(), ED4_manager::check_in_bases(), ED4_manager::check_out_bases(), ED4_manager::create_consensus(), ED4_text_terminal::draw(), ED4_set_iupac(), ED4_Edit_String::edit(), has_base_at::fulfilled_by(), ED4_SearchResults::search(), ED4_manager::update_bases(), and write_sequence().

const char * ED4_terminal::resolve_pointer_to_char_pntr ( int *  str_len = NULp) const
virtual

Reimplemented from ED4_base.

Definition at line 142 of file ED4_terminal.cxx.

References e4_assert, ED4_ROOT, GB_BITS, GB_BYTES, GB_DB, GB_FLOAT, GB_FLOATS, GB_INT, GB_INTS, GB_read_bits_count(), GB_read_bits_pntr(), GB_read_bytes_count(), GB_read_bytes_pntr(), GB_read_char_pntr(), GB_read_string_count(), GB_read_type(), GB_STRING, ED4_root::get_gb_main(), ED4_base::get_species_pointer(), ED4_base::id, NULp, result, and ta.

Referenced by create_new_species(), resolve_pointer_to_string_copy(), and ED4_manager::update_bases_and_rebuild_consensi().

void ED4_terminal::remove_callbacks ( )
virtual

Implements ED4_base.

Definition at line 265 of file ED4_terminal.cxx.

References ED4_base::clr_property(), ED4_base::get_species_pointer(), NULp, PROP_CURSOR_ALLOWED, request_refresh(), ED4_base::set_species_pointer(), and tflag.

GB_ERROR ED4_terminal::write_sequence ( const char *  seq,
int  seq_len 
)

Definition at line 201 of file ED4_terminal.cxx.

References aw_message(), aw_question(), ED4_root::aw_root, AW_root::awar(), curr_timestamp, e4_assert, ED4_AWAR_ANNOUNCE_CHECKSUM_CHANGES, ED4_ROOT, ED4_U_UP, GB_BITS, gb_main, GB_pop_transaction(), GB_push_transaction(), GB_read_clock(), GB_read_type(), GB_STRING, GB_write_bits(), GB_write_string(), GBS_checksum(), ED4_root::get_gb_main(), ED4_base::get_parent(), ED4_base::get_species_pointer(), ED4_base::has_property(), LEV_MULTI_SPECIES, LEV_SPECIES, NULp, PROP_CONSENSUS_RELEVANT, AW_awar::read_int(), request_refresh(), resolve_pointer_to_string_copy(), and ED4_manager::update_bases_and_rebuild_consensi().

Referenced by ED4_set_iupac(), and ED4_Edit_String::edit().

void ED4_terminal::scroll_into_view ( ED4_window *  ed4w)

Definition at line 1331 of file ED4_cursor.cxx.

References ED4_window::aww, ED4_base::calc_world_coords(), ED4_window::coords, current_ed4w(), ED4_C_DOWN, ED4_C_NONE, ED4_C_UP, ED4_scrollbar_change_cb(), ED4_base::extension, ED4_base::get_area_level(), AW_window::get_scrolled_picture_height(), get_upper_lower_cursor_pos(), NULp, AW_window::set_vertical_scrollbar_position(), ED4_extension::size, ED4_coords::top_area_height, ED4_coords::window_lower_clip_point, and ED4_coords::window_upper_clip_point.

Referenced by ED4_cursor::jump_screen_pos(), and ED4_cursor::show_cursor_at().

bool ED4_terminal::setCursorTo ( ED4_cursor *  cursor,
int  seq_pos,
bool  unfoldGroups,
ED4_CursorJumpType  jump_type 
)
inline

Definition at line 2196 of file ed4_class.hxx.

References ED4_base::get_parent(), and LEV_SPECIES.

Referenced by ED4_restore_curpos(), ED4_search_cb(), searchParamsChanged(), and toggle_cursor_group_folding().

bool ED4_terminal::is_hidden ( ) const
inlinevirtual

Implements ED4_base.

Definition at line 1333 of file ed4_class.hxx.

References ED4_manager::is_hidden(), and ED4_base::parent.

Referenced by ED4_cursor::jump_screen_pos(), and ED4_cursor::move_cursor().

Member Data Documentation

unsigned int ED4_terminal::deleted

Definition at line 1290 of file ed4_class.hxx.

struct { ... } ED4_terminal::tflag

Referenced by Delete(), delete_requested_children(), ED4_terminal(), and remove_callbacks().

long ED4_terminal::curr_timestamp

Definition at line 1292 of file ed4_class.hxx.

Referenced by changed_by_database(), ED4_terminal(), and write_sequence().

The documentation for this class was generated from the following files:
Generated by   doxygen 1.8.8