#include <ed4_class.hxx>

Inheritance diagram for ED4_multi_species_manager:

Collaboration diagram for ED4_multi_species_manager:

Public Member Functions
	ED4_multi_species_manager (const char id, AW_pos width, AW_pos height, ED4_manager parent)

	DECLARE_DUMP_FOR_LEAFCLASS (ED4_manager)

void	update_requested_children () OVERRIDE

void	delete_requested_children () OVERRIDE

int	count_visible_children ()

ED4_species_manager *	get_consensus_manager () const

ED4_species_name_terminal *	get_consensus_name_terminal () const

int	get_no_of_selected_species ()

int	get_no_of_species ()

void	update_group_id ()

void	invalidate_species_counters ()

int	has_valid_counters () const

bool	all_are_selected () const

void	select_all (bool only_species)

void	deselect_all_species_and_SAI ()

void	invert_selection_of_all_species ()

void	marked_species_select (bool select)

void	selected_species_mark (bool mark)

void	toggle_selected_species ()

Public Member Functions inherited from ED4_manager
	E4B_AVOID_UNNEEDED_CASTS (manager)

	DECLARE_DUMP_FOR_BASECLASS (ED4_manager, ED4_base)

void	add_delete_callback (const ED4_managerCallback &cb)

void	remove_delete_callback (const ED4_managerCallback &cb)

int	refresh_flag_ok ()

void	changed_by_database () OVERRIDE

void	deleted_from_database () OVERRIDE

void	Show (bool refresh_all, bool is_cleared) OVERRIDE

bool	calc_bounding_box () FINAL_OVERRIDE

ED4_returncode	distribute_children ()

ED4_returncode	event_sent_by_parent (AW_event event, AW_window aww) FINAL_OVERRIDE

void	request_refresh (int clear=1) FINAL_OVERRIDE

ED4_returncode	clear_refresh ()

void	resize_requested_children () OVERRIDE

void	Delete () FINAL_OVERRIDE

ED4_returncode	move_requested_by_parent (ED4_move_info *mi)

void	create_consensus (ED4_abstract_group_manager upper_group_manager, arb_progress progress)

ARB_ERROR	route_down_hierarchy (const ED4_route_cb &cb) FINAL_OVERRIDE

ED4_base *	find_first_that (ED4_level level, const ED4_basePredicate &fulfills_predicate)

ED4_returncode	move_requested_by_child (ED4_move_info *moveinfo)

void	resize_requested_by_child ()

ED4_returncode	refresh_requested_by_child ()

void	delete_requested_by_child ()

void	update_requested_by_child ()

ED4_base *	get_defined_level (ED4_level lev) const

void	update_consensus (ED4_manager old_parent, ED4_manager new_parent, ED4_base *sequence)

ED4_returncode	rebuild_consensi (ED4_base *start_species, ED4_update_flag update_flag)

ED4_returncode	check_in_bases (ED4_base *added_base)

ED4_returncode	check_out_bases (ED4_base *subbed_base)

ED4_returncode	update_bases (const ED4_base old_base, const ED4_base new_base, PosRange range=PosRange::whole())

ED4_returncode	update_bases (const char old_seq, int old_len, const char new_seq, int new_len, PosRange range=PosRange::whole())

ED4_returncode	update_bases (const char old_seq, int old_len, const ED4_base new_base, PosRange range=PosRange::whole())

ED4_returncode	update_bases (const BaseFrequencies old_table, const BaseFrequencies new_table, PosRange range=PosRange::whole())

ED4_returncode	update_bases_and_rebuild_consensi (const char old_seq, int old_len, ED4_base species, ED4_update_flag update_flag, PosRange range=PosRange::whole())

ED4_returncode	handle_move (ED4_move_info *moveinfo)

ED4_base *	get_competent_child (AW_pos x, AW_pos y, ED4_properties relevant_prop)

ED4_base *	get_competent_clicked_child (AW_pos x, AW_pos y, ED4_properties relevant_prop)

ED4_base *	search_spec_child_rek (ED4_level level)

ED4_base *	search_ID (const char *id) FINAL_OVERRIDE

void	remove_callbacks () OVERRIDE

ED4_terminal *	get_first_terminal (int start_index=0) const

ED4_terminal *	get_last_terminal (int start_index=-1) const

void	hide_children ()

void	unhide_children ()

bool	is_hidden () const FINAL_OVERRIDE

	ED4_manager (const ED4_objspec &spec_, const char id, AW_pos width, AW_pos height, ED4_manager parent)

	~ED4_manager () OVERRIDE

Public Member Functions inherited from ED4_base
void	draw_bb (int color)

	DECLARE_DUMP_FOR_ROOTCLASS (ED4_base)

GBDATA *	get_species_pointer () const

void	set_species_pointer (GBDATA *gbd)

bool	has_callback () const

int	adjust_clipping_rectangle ()

void	resize_dynamic ()

ED4_returncode	clear_background (int color=0)

void	set_links (ED4_base width_ref, ED4_base height_ref)

void	set_both_links (ED4_base *ref)

void	set_property (ED4_properties prop)

void	clr_property (ED4_properties prop)

bool	has_property (ED4_properties prop) const

void	calc_rel_coords (AW_pos x, AW_pos y)

void	calc_world_coords (AW_pos x, AW_pos y) const

const AW::Position &	calc_world_coords () const

void	update_world_coords_cache () const

AW::Rectangle	get_win_area (ED4_window *ed4w) const

void	request_resize ()

void	request_resize_of_linked ()

void	resize_requested_by_link (ED4_base *link)

void	set_update ()

int	calc_group_depth ()

void	check_all ()

short	in_border (AW_pos abs_x, AW_pos abs_y, ED4_movemode mode)

ED4_returncode	set_width ()

ED4_AREA_LEVEL	get_area_level (ED4_multi_species_manager **multi_species_manager=NULp) const

ED4_manager *	get_parent (ED4_level lev) const

void	unlink_from_parent ()

bool	has_parent (ED4_manager *Parent)

bool	is_child_of (ED4_manager *Parent)

virtual char *	resolve_pointer_to_string_copy (int *str_len=NULp) const

virtual const char *	resolve_pointer_to_char_pntr (int *str_len=NULp) const

ED4_group_manager *	is_in_folded_group () const

char *	get_name_of_species ()

ED4_terminal *	get_next_terminal ()

ED4_terminal *	get_prev_terminal ()

void	generate_configuration_string (GBS_strstruct &buffer)

const ED4_terminal *	get_consensus_relevant_terminal () const

	ED4_base (const ED4_objspec &spec_, GB_CSTR id, AW_pos width, AW_pos height, ED4_manager *parent)

virtual	~ED4_base ()

int	is_terminal () const

int	is_text_terminal () const

int	is_species_name_terminal () const

int	is_sequence_info_terminal () const

int	is_sequence_terminal () const

int	is_orf_terminal () const

int	is_pure_text_terminal () const

int	is_columnStat_terminal () const

int	is_bracket_terminal () const

int	is_spacer_terminal () const

int	is_line_terminal () const

int	is_flag_header_terminal () const

int	is_flag_terminal () const

int	is_manager () const

int	is_sequence_manager () const

int	is_multi_name_manager () const

int	is_name_manager () const

int	is_multi_species_manager () const

int	is_multi_sequence_manager () const

int	is_device_manager () const

int	is_group_manager () const

int	is_root_group_manager () const

int	is_abstract_group_manager () const

int	is_species_manager () const

int	is_area_manager () const

	E4B_DECL_CASTOP (area_manager)

	E4B_DECL_CASTOP (abstract_group_manager)

	E4B_DECL_CASTOP (bracket_terminal)

	E4B_DECL_CASTOP (columnStat_terminal)

	E4B_DECL_CASTOP (consensus_sequence_terminal)

	E4B_DECL_CASTOP (device_manager)

	E4B_DECL_CASTOP (group_manager)

	E4B_DECL_CASTOP (line_terminal)

	E4B_DECL_CASTOP (manager)

	E4B_DECL_CASTOP (multi_name_manager)

	E4B_DECL_CASTOP (multi_sequence_manager)

	E4B_DECL_CASTOP (multi_species_manager)

	E4B_DECL_CASTOP (name_manager)

	E4B_DECL_CASTOP (orf_terminal)

	E4B_DECL_CASTOP (pure_text_terminal)

	E4B_DECL_CASTOP (root_group_manager)

	E4B_DECL_CASTOP (sequence_info_terminal)

	E4B_DECL_CASTOP (sequence_manager)

	E4B_DECL_CASTOP (sequence_terminal)

	E4B_DECL_CASTOP (spacer_terminal)

	E4B_DECL_CASTOP (species_manager)

	E4B_DECL_CASTOP (species_name_terminal)

	E4B_DECL_CASTOP (terminal)

	E4B_DECL_CASTOP (text_terminal)

	E4B_DECL_CASTOP (flag_header_terminal)

	E4B_DECL_CASTOP (flag_terminal)

ED4_species_manager *	containing_species_manager () const

bool	is_consensus_manager () const

bool	is_SAI_manager () const

bool	is_species_seq_manager () const

ED4_species_type	get_species_type () const

bool	inside_consensus_manager () const

bool	inside_SAI_manager () const

bool	inside_species_seq_manager () const

bool	is_consensus_terminal () const

bool	is_SAI_terminal () const

bool	is_species_seq_terminal () const

bool	is_consensus_sequence_terminal () const

Public Member Functions inherited from ED4_container
ED4_manager *	owner ()

const ED4_manager *	owner () const

ED4_base *	member (ED4_index i) const

ED4_index	members () const

bool	empty () const

void	clear ()

void	insert_member (ED4_base *new_member)

void	append_member (ED4_base *new_member)

ED4_returncode	remove_member (ED4_base *member)

ED4_index	search_member (ED4_extension *location, ED4_properties prop)

ED4_returncode	search_target_species (ED4_extension location, ED4_properties prop, ED4_base *found_member, ED4_level return_level)

ED4_returncode	move_member (ED4_index old_pos, ED4_index new_pos)

bool	members_ok () const

	ED4_container ()

virtual	~ED4_container ()

Additional Inherited Members
Static Public Member Functions inherited from ED4_base
static void	touch_world_cache ()

Public Attributes inherited from ED4_base
const ED4_objspec &	spec

ED4_manager *	parent

ED4_properties	dynamic_prop

char *	id

ED4_index	index

ED4_base *	width_link

ED4_base *	height_link

ED4_extension	extension

ED4_update_info	update_info

struct {
unsigned int hidden: 1

}	flag

Protected Member Functions inherited from ED4_container
bool	valid_index (ED4_index idx) const

bool	existing_index (ED4_index idx) const