Node Class Reference

#include <PRD_Node.hxx>

Inheritance diagram for Node:

Collaboration diagram for Node:

Public Member Functions
	Node (Node *parent_, char base_, PRD_Sequence_Pos last_index_, PRD_Sequence_Pos offset_)
	Node (Node *parent_, char base_, PRD_Sequence_Pos last_index_)
	Node (Node *parent_, char base_)
	Node ()
	~Node ()
Node *	childByBase (unsigned char base_)
bool	isValidPrimer ()
bool	isPrimer ()
bool	isLeaf ()
void	print ()

Public Attributes
Node *	parent
Node *	child [4]
unsigned char	base
unsigned int	child_bits: 4
PRD_Sequence_Pos	offset
PRD_Sequence_Pos	last_base_index

Detailed Description

Definition at line 9 of file PRD_Node.hxx.

Constructor & Destructor Documentation

Node::Node	(	Node *	parent_,
		char	base_,
		PRD_Sequence_Pos	last_index_,
		PRD_Sequence_Pos	offset_
	)

Definition at line 20 of file PRD_Node.cxx.

References init.

Node::Node	(	Node *	parent_,
		char	base_,
		PRD_Sequence_Pos	last_index_
	)

Definition at line 24 of file PRD_Node.cxx.

References init.

Node::Node	(	Node *	parent_,
		char	base_
	)

Definition at line 28 of file PRD_Node.cxx.

References init.

Node::Node

(

)

Definition at line 32 of file PRD_Node.cxx.

References init, and NULp.

Node::~Node

(

)

Definition at line 40 of file PRD_Node.cxx.

Member Function Documentation

Node* Node::childByBase ( unsigned char  base_ )

inline

Definition at line 26 of file PRD_Node.hxx.

References CHAR2CHILD, and ChildLookupTable::INDEX.

Referenced by SearchFIFO::iterateWith().

bool Node::isValidPrimer ( )

inline

Definition at line 27 of file PRD_Node.hxx.

Referenced by PrimerDesign::convertTreesToLists(), and SearchFIFO::iterateWith().

bool Node::isPrimer ( )

inline

Definition at line 28 of file PRD_Node.hxx.

bool Node::isLeaf ( )

inline

Definition at line 29 of file PRD_Node.hxx.

References child_bits.

Referenced by SearchFIFO::iterateWith().

void Node::print

(

)

Definition at line 53 of file PRD_Node.cxx.

References offset.

Member Data Documentation

Node* Node::parent

Definition at line 13 of file PRD_Node.hxx.

Referenced by SearchFIFO::iterateWith().

Node* Node::child[4]

Definition at line 14 of file PRD_Node.hxx.

Referenced by PrimerDesign::buildPrimerTrees(), PrimerDesign::convertTreesToLists(), SearchFIFO::iterateWith(), PrimerDesign::matchSequenceAgainstPrimerTrees(), and SearchFIFO::push().

unsigned char Node::base

Definition at line 15 of file PRD_Node.hxx.

Referenced by SearchFIFO::print().

unsigned int Node::child_bits

Definition at line 16 of file PRD_Node.hxx.

Referenced by isLeaf(), and SearchFIFO::iterateWith().

PRD_Sequence_Pos Node::offset

Definition at line 17 of file PRD_Node.hxx.

Referenced by PrimerDesign::convertTreesToLists().

PRD_Sequence_Pos Node::last_base_index

Definition at line 18 of file PRD_Node.hxx.

Referenced by PrimerDesign::convertTreesToLists(), and SearchFIFO::iterateWith().

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The documentation for this class was generated from the following files:

• PRIMER_DESIGN/PRD_Node.hxx
• PRIMER_DESIGN/PRD_Node.cxx