SQ_GroupData_Impl< I > Class Template Reference

#include <SQ_GroupData.h>

Inheritance diagram for SQ_GroupData_Impl< I >:

Collaboration diagram for SQ_GroupData_Impl< I >:

Public Member Functions
	SQ_GroupData_Impl ()
	~SQ_GroupData_Impl () OVERRIDE
SQ_GroupData_Impl &	operator= (const SQ_GroupData &Other) OVERRIDE
void	SQ_init_consensus (int size) FINAL_OVERRIDE
int	SQ_print_on_screen () OVERRIDE
void	SQ_add (const SQ_GroupData &other) OVERRIDE
Public Member Functions inherited from SQ_GroupData
	SQ_GroupData ()
virtual	~SQ_GroupData ()
virtual SQ_GroupData *	clone () const =0
void	SQ_set_avg_bases (int bases)
int	SQ_get_avg_bases () const
void	SQ_set_avg_gc (double gc)
double	SQ_get_avg_gc () const
void	SQ_count_sequences ()
int	SQ_get_nr_sequences () const
bool	SQ_is_initialized () const
virtual consensus_result	SQ_calc_consensus (const char *sequence) const =0
virtual void	SQ_add_sequence (const char *sequence)=0
int	getSize () const

Protected Attributes
Int< I > *	consensus
Protected Attributes inherited from SQ_GroupData
int	size
int	avg_bases
int	nr_sequences
double	gc_prop
bool	initialized

Detailed Description

template<int I>
class SQ_GroupData_Impl< I >

Definition at line 115 of file SQ_GroupData.h.

Constructor & Destructor Documentation

template<int I>

SQ_GroupData_Impl< I >::SQ_GroupData_Impl ( )

inline

Definition at line 120 of file SQ_GroupData.h.

template<int I>

SQ_GroupData_Impl< I >::~SQ_GroupData_Impl

(

)

Definition at line 174 of file SQ_GroupData.h.

References SQ_GroupData_Impl< I >::consensus.

Member Function Documentation

template<int I>

SQ_GroupData_Impl& SQ_GroupData_Impl< I >::operator= ( const SQ_GroupData &  Other )

inlinevirtual

Implements SQ_GroupData.

Definition at line 125 of file SQ_GroupData.h.

template<int I>

void SQ_GroupData_Impl< I >::SQ_init_consensus ( int  size )

virtual

Implements SQ_GroupData.

Definition at line 178 of file SQ_GroupData.h.

References SQ_GroupData_Impl< I >::consensus, SQ_GroupData::initialized, seq_assert, and SQ_GroupData::size.

Referenced by SQ_GroupData_Impl< 6 >::operator=().

template<int I>

int SQ_GroupData_Impl< I >::SQ_print_on_screen ( )

virtual

Implements SQ_GroupData.

Definition at line 199 of file SQ_GroupData.h.

References SQ_GroupData_Impl< I >::consensus, I, and SQ_GroupData::size.

template<int I>

void SQ_GroupData_Impl< I >::SQ_add ( const SQ_GroupData &  other )

virtual

Implements SQ_GroupData.

Definition at line 186 of file SQ_GroupData.h.

References SQ_GroupData::avg_bases, SQ_GroupData_Impl< I >::consensus, SQ_GroupData::gc_prop, SQ_GroupData::nr_sequences, seq_assert, and SQ_GroupData::size.

Member Data Documentation

template<int I>

Int<I>* SQ_GroupData_Impl< I >::consensus

protected

Definition at line 147 of file SQ_GroupData.h.

Referenced by SQ_GroupData_Impl< 6 >::operator=(), SQ_GroupData_Impl< I >::SQ_add(), SQ_GroupData_Impl< 6 >::SQ_GroupData_Impl(), SQ_GroupData_Impl< I >::SQ_init_consensus(), SQ_GroupData_Impl< I >::SQ_print_on_screen(), and SQ_GroupData_Impl< I >::~SQ_GroupData_Impl().

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The documentation for this class was generated from the following file:

• SEQ_QUALITY/SQ_GroupData.h