SpecSet Class Reference

#include <NT_species_set.h>

Inheritance diagram for SpecSet:

Collaboration diagram for SpecSet:

Public Member Functions
bool	is_leaf_set () const
int	get_known_members () const

Public Attributes
unsigned char *	bitstring
AP_tree *	set_node

Protected Member Functions
void	init (AP_tree *nodei, const SpecSetRegistry &ssr)
	SpecSet (AP_tree *nodei, const SpecSetRegistry &ssr, const char *species_name)
	SpecSet (AP_tree *nodei, const SpecSetRegistry &ssr, const SpecSet *l, const SpecSet *r)
	~SpecSet ()

Protected Attributes
int	known_members

Detailed Description

Definition at line 80 of file NT_species_set.h.

Constructor & Destructor Documentation

SpecSet::SpecSet ( AP_tree *  nodei, const SpecSetRegistry &  ssr, const char *  species_name  )

protected

Definition at line 269 of file NT_tree_cmp.cxx.

References bitstring, SpecSetRegistry::bitstring_bytes(), SpecSetRegistry::get_species_index(), init(), known_members, and nt_assert.

SpecSet::SpecSet ( AP_tree *  nodei, const SpecSetRegistry &  ssr, const SpecSet *  l, const SpecSet *  r  )

protected

Definition at line 282 of file NT_tree_cmp.cxx.

References bitstring, SpecSetRegistry::bitstring_longs(), init(), and known_members.

SpecSet::~SpecSet ( )

protected

Definition at line 295 of file NT_tree_cmp.cxx.

References bitstring.

Member Function Documentation

void SpecSet::init ( AP_tree *  nodei, const SpecSetRegistry &  ssr  )

protected

Definition at line 263 of file NT_tree_cmp.cxx.

References SpecSetRegistry::allocate_bitstring(), bitstring, known_members, and set_node.

Referenced by SpecSet().

bool SpecSet::is_leaf_set ( ) const

inline

Definition at line 97 of file NT_species_set.h.

References TreeNode::is_leaf().

Referenced by SpecSetRegistry::registerTree().

int SpecSet::get_known_members ( ) const

inline

Definition at line 98 of file NT_species_set.h.

References known_members.

Referenced by GroupMatchScorer::matchGroups().

Member Data Documentation

int SpecSet::known_members

protected

Definition at line 84 of file NT_species_set.h.

Referenced by get_known_members(), init(), RSpecSet::size(), TSpecSet::size(), and SpecSet().

unsigned char* SpecSet::bitstring

Definition at line 94 of file NT_species_set.h.

Referenced by init(), SpecSetRegistry::search_best_match(), SpecSet(), and ~SpecSet().

AP_tree* SpecSet::set_node

Definition at line 95 of file NT_species_set.h.

Referenced by init(), NTREE_move_tree_info(), and SpecSetRegistry::write_node_information().

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The documentation for this class was generated from the following files:

• NTREE/NT_species_set.h
• NTREE/NT_tree_cmp.cxx