FastAlignReport Class Reference

#include <seq_search.hxx>

Inheritance diagram for FastAlignReport:

Collaboration diagram for FastAlignReport:

Public Member Functions
	FastAlignReport (const char *master_name, bool show_Gaps_Messages)
	~FastAlignReport ()
void	memorize_insertion (long offset, long gaps)
const FastAlignInsertion *	insertion () const
void	count_aligned_base (int mismatched)
void	count_unaligned_base (int no_of_bases)
void	dump () const

Detailed Description

Definition at line 418 of file seq_search.hxx.

Constructor & Destructor Documentation

FastAlignReport::FastAlignReport ( const char *  master_name, bool  show_Gaps_Messages  )

inline

Definition at line 431 of file seq_search.hxx.

References ARB_strdup(), and NULp.

FastAlignReport::~FastAlignReport ( )

inline

Definition at line 440 of file seq_search.hxx.

Member Function Documentation

void FastAlignReport::memorize_insertion ( long  offset, long  gaps  )

inline

Definition at line 445 of file seq_search.hxx.

References FastAlignInsertion::append(), and aw_message().

Referenced by insertAligned(), and insertClustalValigned().

const FastAlignInsertion* FastAlignReport::insertion ( ) const

inline

Definition at line 463 of file seq_search.hxx.

Referenced by alignCompactedTo().

void FastAlignReport::count_aligned_base ( int  mismatched )

inline

Definition at line 465 of file seq_search.hxx.

Referenced by insertBase(), and insertGap().

void FastAlignReport::count_unaligned_base ( int  no_of_bases )

inline

Definition at line 466 of file seq_search.hxx.

Referenced by cannot_fast_align(), and insertSlaveBases().

void FastAlignReport::dump ( ) const

inline

Definition at line 468 of file seq_search.hxx.

References FastAlignInsertion::dumpAll().

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The documentation for this class was generated from the following file:

• SL/FAST_ALIGNER/seq_search.hxx