Public Member Functions | List of all members
SQ_ambiguities Class Reference

#include <SQ_ambiguities.h>

Public Member Functions

 SQ_ambiguities ()
void SQ_count_ambiguities (const char *iupac, int length, GBDATA *gb_quality)
int SQ_get_nr_ambiguities () const
int SQ_get_percent_ambiguities () const
int SQ_get_iupac_value () const

Detailed Description

Definition at line 21 of file SQ_ambiguities.h.

Constructor & Destructor Documentation

SQ_ambiguities::SQ_ambiguities ( )

Definition at line 27 of file SQ_ambiguities.h.

Member Function Documentation

void SQ_ambiguities::SQ_count_ambiguities ( const char iupac,
int  length,
GBDATA gb_quality 

Definition at line 16 of file SQ_ambiguities.cxx.

References GB_INT, GB_search(), GB_write_int(), length, and seq_assert.

Referenced by SQ_pass1(), and SQ_pass1_no_tree().

int SQ_ambiguities::SQ_get_nr_ambiguities ( ) const

Definition at line 35 of file SQ_ambiguities.h.

int SQ_ambiguities::SQ_get_percent_ambiguities ( ) const

Definition at line 36 of file SQ_ambiguities.h.

int SQ_ambiguities::SQ_get_iupac_value ( ) const

Definition at line 37 of file SQ_ambiguities.h.

The documentation for this class was generated from the following files: