SQ_ambiguities Class Reference

#include <SQ_ambiguities.h>

Public Member Functions
	SQ_ambiguities ()
void	SQ_count_ambiguities (const char *iupac, int length, GBDATA *gb_quality)
int	SQ_get_nr_ambiguities () const
int	SQ_get_percent_ambiguities () const
int	SQ_get_iupac_value () const

Detailed Description

Definition at line 21 of file SQ_ambiguities.h.

Constructor & Destructor Documentation

SQ_ambiguities::SQ_ambiguities ( )

inline

Definition at line 27 of file SQ_ambiguities.h.

Member Function Documentation

void SQ_ambiguities::SQ_count_ambiguities	(	const char *	iupac,
		int	length,
		GBDATA *	gb_quality
	)

Definition at line 16 of file SQ_ambiguities.cxx.

References GB_INT, GB_search(), GB_write_int(), length, and seq_assert.

Referenced by SQ_pass1(), and SQ_pass1_no_tree().

int SQ_ambiguities::SQ_get_nr_ambiguities ( ) const

inline

Definition at line 35 of file SQ_ambiguities.h.

int SQ_ambiguities::SQ_get_percent_ambiguities ( ) const

inline

Definition at line 36 of file SQ_ambiguities.h.

int SQ_ambiguities::SQ_get_iupac_value ( ) const

inline

Definition at line 37 of file SQ_ambiguities.h.

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The documentation for this class was generated from the following files:

• SEQ_QUALITY/SQ_ambiguities.h
• SEQ_QUALITY/SQ_ambiguities.cxx