#include <arb_strbuf.h>

Inheritance diagram for GBS_strstruct:

Collaboration diagram for GBS_strstruct:

Public Member Functions
	GBS_strstruct ()

	GBS_strstruct (size_t buffersize)

	~GBS_strstruct ()

size_t	get_buffer_size () const

size_t	get_position () const

bool	filled () const

bool	empty () const

const char *	get_data () const

char *	get_copy () const

char *	release ()

char *	release_memfriendly ()

void	erase ()

void	cut_tail (size_t byte_count)

void	swap_content (GBS_strstruct &other)

void	put (char c)

void	nput (char c, size_t count)

void	ncat (const char *from, size_t count)

void	cat (const char *from)

int	ncatPadded (const char *from, size_t count, size_t paddedWidth)

int	catPadded (const char *from, size_t paddedWidth)

void	npaste_at (size_t at, const char *from, size_t count)

void	paste_at (size_t at, const char *from)

void	vnprintf (size_t maxlen, const char *templat, va_list &parg) __ATTR__VFORMAT_MEMBER(2)

void	nprintf (size_t maxlen, const char *templat,...) __ATTR__FORMAT_MEMBER(2)

void	putlong (long l)

void	putfloat (float f)

void	cat_wrapped (const char in, const char from)

void	cat_sQuoted (const char *from)

void	cat_dQuoted (const char *from)

Detailed Description

Definition at line 37 of file arb_strbuf.h.

Constructor & Destructor Documentation

GBS_strstruct::GBS_strstruct ( )

inline

Definition at line 94 of file arb_strbuf.h.

GBS_strstruct::GBS_strstruct ( size_t buffersize )

inline

Definition at line 99 of file arb_strbuf.h.

GBS_strstruct::~GBS_strstruct ( )

inline

Definition at line 106 of file arb_strbuf.h.

Member Function Documentation

size_t GBS_strstruct::get_buffer_size ( ) const

inline

returns the current buffer size.

Definition at line 108 of file arb_strbuf.h.

size_t GBS_strstruct::get_position ( ) const

inline

returns the current content size.

Definition at line 112 of file arb_strbuf.h.

Referenced by AW_init_color_group_defaults(), filled(), GB_command_interpreter_in_env(), get_copy(), match_string(), MP_all_species_string(), MP_match_string(), npaste_at(), nt_build_conf_string_rek(), nt_create_configuration(), pd_get_the_gene_names(), pd_get_the_names(), MG_remap::remap(), ReplaceArgs(), and ReplaceString().

bool GBS_strstruct::filled ( ) const

inline

Definition at line 117 of file arb_strbuf.h.

References get_position().

Referenced by empty().

bool GBS_strstruct::empty ( ) const

inline

Definition at line 118 of file arb_strbuf.h.

References filled().

Referenced by g_bs_read_final_hash(), and GBS_string_eval_in_env().

const char* GBS_strstruct::get_data ( ) const

inline

get content as const char*. Result is valid as long as 'this' exists and no reallocation takes place.

Definition at line 120 of file arb_strbuf.h.

Referenced by aed_start_naligning(), aw_refresh_tmp_message_display(), awt_create_select_filter_window_aw_cb(), awtc_nn_search_all_listed(), canvas_to_printer(), colorDefChanged_callback(), CON_export(), concatenateAlignments(), create_export_awars(), create_import_awars(), deleteColorTranslationTable(), BootstrapConfig::display_remark(), ED4_finish_and_show_notFoundMessage(), GB_command_interpreter_in_env(), GB_get_supported_compression_flags(), GB_xcmd(), GBS_string_eval_in_env(), GBT_save_colorset(), GBT_write_group_name(), GEN_write_position(), get_copy(), QueriedGroups::get_group_display(), main(), test_runtool::make_checked_piped_command(), StrUniquifier::make_unique_key(), MG_equal_alignments(), MP_all_species_string(), MP_match_string(), nt_create_configuration(), pd_query_pt_server(), Package::print_xsubs(), readXmlTree(), MG_remap::remap(), AP_pos_var::save_aliEntry_to_SAI(), set_suffix(), show_count(), sina_start(), st_ml_add_quality_string_to_species(), st_remove_entries(), GBL_IMPL::trace_params(), TreeAdmin::tree_append_remark(), NodeTextBuilder::work(), and write_entry().

char* GBS_strstruct::get_copy ( ) const

inline

return a heap copy of the current content of the buffer.

Definition at line 125 of file arb_strbuf.h.

References ARB_strndup(), get_data(), and get_position().

Referenced by build_split_id(), gbl_translate(), and remove_by_tab().

char* GBS_strstruct::release ( )

inline

take ownership of current buffer. might be oversized.

Definition at line 129 of file arb_strbuf.h.

References s.

Referenced by AP_probe_iterate_event(), ARB_main(), arb_shell_expand(), AW_init_color_group_defaults(), collectIntFunResults(), complete_newick_comment(), ed_submit_info_event(), filter_columnstat_SAIs(), filter_seq(), g_b_undo_info(), g_bs_read_tagged_hash(), GB_find_executable(), GBK_doublequote(), GBK_singlequote(), gbl_exec(), gbl_merge(), gbl_readdb(), GBS_hashtab_2_string(), GBS_regreplace(), GBS_string_eval_in_env(), GBT_join_strings(), GBT_tree_2_newick(), AW_selection_list::get_content_as_string(), gb_hierarchy_location::get_db_path(), get_file_content_for_viewer(), get_match_hinfo_formatted(), get_match_info_formatted(), ConsensusTreeBuilder::get_tree_remark(), match_string(), MG_diff_strings(), nt_create_configuration(), pd_get_the_gene_names(), pd_get_the_names(), ptpd_read_names(), ArbImporter::read_data(), readableUnknownNames(), release_memfriendly(), MG_remap::remap(), ReplaceArgs(), ReplaceString(), PT_FamilyFinder::results2string(), EDB_root_bact::save_current_config(), SEC_xstring_to_foldedHelixList(), set_field_of_queried_cb(), set_suffix(), sizetarray2string(), and TreeReader::takeComment().

char* GBS_strstruct::release_memfriendly ( )

inline

like release(), but shrink memory block if too oversized.

Definition at line 133 of file arb_strbuf.h.

References release().

Referenced by GBL_streams::concatenated(), do_extract_words(), g_bs_get_string_of_tag_hash(), GB_read_fp(), GBS_eval_env(), GBS_fread_string(), GBS_log_action_to(), GBS_replace_tabs_by_spaces(), GBT_commit_rename_session(), GBT_store_marked_species(), and PT_find_exProb().

void GBS_strstruct::erase ( )

inline

erase buffer

Definition at line 141 of file arb_strbuf.h.

Referenced by BootstrapConfig::display_remark(), gbl_translate(), GBS_string_eval_in_env(), QueriedGroups::get_group_display(), StrUniquifier::make_unique_key(), MP_all_species_string(), MP_match_string(), remove_by_tab(), and NodeTextBuilder::work().

void GBS_strstruct::cut_tail ( size_t byte_count )

inline

Removes 'byte_count' characters from the tail of the content

Definition at line 145 of file arb_strbuf.h.

Referenced by GBT_save_colorset(), GBT_store_marked_species(), gb_hierarchy_location::get_db_path(), nt_build_conf_string_rek(), pd_get_the_gene_names(), pd_get_the_names(), MG_remap::remap(), PT_FamilyFinder::results2string(), and sizetarray2string().

void GBS_strstruct::swap_content ( GBS_strstruct & other )

inline

Definition at line 150 of file arb_strbuf.h.

References swap().

Referenced by GBS_string_eval_in_env().

void GBS_strstruct::put ( char c )

inline

append single character to content

Definition at line 158 of file arb_strbuf.h.

Referenced by aed_start_naligning(), AP_probe_iterate_event(), Package::append_code(), ARB_main(), arb_shell_expand(), AW_init_color_group_defaults(), aw_refresh_tmp_message_display(), awt_create_select_filter_window_aw_cb(), awtc_nn_search_all_listed(), build_split_id(), canvas_to_printer(), cat_internal(), cat_wrapped(), colorDefChanged_callback(), complete_newick_comment(), CON_export(), create_export_awars(), create_import_awars(), deleteColorTranslationTable(), BootstrapConfig::display_remark(), do_extract_words(), dump_hexbyte(), filter_columnstat_SAIs(), filter_seq(), g_b_undo_info(), g_bs_merge_tags(), g_bs_read_final_hash(), GB_command_interpreter_in_env(), GB_read_fp(), GB_xcmd(), GBK_doublequote(), GBK_singlequote(), gbl_exec(), gbl_translate(), gbs_build_replace_string(), GBS_fread_string(), gbs_hash_to_strstruct(), GBS_log_action_to(), GBS_regreplace(), GBS_replace_tabs_by_spaces(), GBT_join_strings(), GBT_save_colorset(), GBT_store_marked_species(), GBT_tree_2_newick(), GEN_write_position(), ED4_base::generate_configuration_string(), AW_selection_list::get_content_as_string(), gb_hierarchy_location::get_db_path(), get_file_content_for_viewer(), QueriedGroups::get_group_display(), get_match_hinfo_formatted(), ConsensusTreeBuilder::get_tree_remark(), main(), match_string(), MG_diff_strings(), MG_equal_alignments(), MP_all_species_string(), MP_match_string(), nt_build_conf_marked(), nt_build_conf_string_rek(), nt_build_sai_string(), nt_build_sai_string_by_hash(), pd_get_the_gene_names(), pd_get_the_names(), PT_find_exProb(), ptpd_read_names(), readXmlTree(), MG_remap::remap(), remove_by_tab(), AP_pos_var::save_aliEntry_to_SAI(), SEC_xstring_to_foldedHelixList(), set_suffix(), show_count(), sizetarray2string(), st_ml_add_quality_string_to_species(), tree2newick(), TreeAdmin::tree_append_remark(), NodeTextBuilder::work(), and write_entry().

void GBS_strstruct::nput	(	char	c,
		size_t	count
	)

inline

append a character repeatedly to content

Definition at line 164 of file arb_strbuf.h.

Referenced by concatenateAlignments(), GB_command_interpreter_in_env(), gbs_hash_to_strstruct(), ncatPadded(), npaste_at(), MG_remap::remap(), and tree2newick().

void GBS_strstruct::ncat	(	const char *	from,
		size_t	count
	)

inline

append 'count' bytes of 'from' to content. (caution : copies zero byte and mem behind if used with wrong len!)

Definition at line 173 of file arb_strbuf.h.

Referenced by Package::append_code(), cat(), filter_seq(), GBK_doublequote(), GBK_singlequote(), GBS_eval_env(), GBS_regreplace(), GBS_string_eval_in_env(), ED4_base::generate_configuration_string(), get_file_content_for_viewer(), MG_diff_strings(), ncatPadded(), nt_build_sai_string_by_hash(), nt_create_configuration(), ReplaceArgs(), ReplaceString(), and set_field_of_queried_cb().

void GBS_strstruct::cat ( const char * from )

inline

append whole string to content

Definition at line 183 of file arb_strbuf.h.

References ncat().

Referenced by aed_start_naligning(), AP_probe_iterate_event(), Package::append_code(), GBT_config_item::append_to_config_string(), ARB_main(), arb_shell_expand(), AW_init_color_group_defaults(), aw_refresh_tmp_message_display(), awt_create_select_filter_window_aw_cb(), awtc_nn_search_all_listed(), canvas_to_printer(), cat_internal(), cat_wrapped(), colorDefChanged_callback(), CON_export(), concatenateAlignments(), GBL_streams::concatenated(), create_export_awars(), create_import_awars(), deleteColorTranslationTable(), do_extract_words(), ed_submit_info_event(), EDB_root_bact::fill_data(), filter_columnstat_SAIs(), g_b_undo_info(), g_bs_merge_tags(), g_bs_read_final_hash(), GB_command_interpreter_in_env(), GB_find_executable(), GB_get_supported_compression_flags(), GB_xcmd(), GBK_doublequote(), gbl_exec(), gbl_merge(), gbl_readdb(), gbs_build_replace_string(), GBS_eval_env(), GBS_log_action_to(), GBS_regreplace(), GBS_string_eval_in_env(), GBT_join_strings(), GBT_save_colorset(), GBT_store_marked_species(), GBT_write_group_name(), GEN_write_position(), ED4_base::generate_configuration_string(), AW_selection_list::get_content_as_string(), gb_hierarchy_location::get_db_path(), QueriedGroups::get_group_display(), get_match_hinfo_formatted(), get_match_info_formatted(), ConsensusTreeBuilder::get_tree_remark(), main(), test_runtool::make_checked_piped_command(), StrUniquifier::make_unique_key(), match_string(), MG_diff_strings(), MG_equal_alignments(), MP_all_species_string(), MP_match_string(), nt_build_conf_marked(), nt_build_conf_string_rek(), nt_build_sai_string(), nt_build_sai_string_by_hash(), pd_get_the_gene_names(), pd_get_the_names(), pd_query_pt_server(), PT_find_exProb(), ptpd_read_names(), ArbImporter::read_data(), readableUnknownNames(), readXmlTree(), ReplaceArgs(), ReplaceString(), SEC_xstring_to_foldedHelixList(), set_suffix(), show_count(), sina_start(), st_ml_add_quality_string_to_species(), st_remove_entries(), GBL_IMPL::trace_params(), tree2newick(), TreeAdmin::tree_append_remark(), and write_entry().

int GBS_strstruct::ncatPadded	(	const char *	from,
		size_t	count,
		size_t	paddedWidth
	)

inline

like catPadded(), when strlen is known or when only a prefix of 'from' shall be concatenated.

Definition at line 188 of file arb_strbuf.h.

References long, max, ncat(), and nput().

Referenced by catPadded().

int GBS_strstruct::catPadded	(	const char *	from,
		size_t	paddedWidth
	)

inline

concatenate 'from' (will not be truncated if paddedWidth is smaller than 'strlen(from)'). Append spaces to pad to 'paddedWidth'. Return number of spaces appended or a negative number ('strlen(from)-paddedWidth').

Definition at line 196 of file arb_strbuf.h.

References ncatPadded().

void GBS_strstruct::npaste_at	(	size_t	at,
		const char *	from,
		size_t	count
	)

inline

copy 'count' bytes from 'from' over existing content starting at offset 'at'. Not meant to operate over end of content. Will fail assertion in that case.

Definition at line 204 of file arb_strbuf.h.

References arb_assert, get_position(), and nput().

Referenced by awt_create_select_filter_window_aw_cb(), and paste_at().