GenePositionMap Class Reference

Public Member Functions
	GenePositionMap ()
void	announceGene (PositionPair gene)
GB_ERROR	buildIntergeneList (const PositionPair &wholeGenome, PositionPairList &intergeneList) const
unsigned long	getOverlap () const
unsigned long	getAllGeneSize () const

Detailed Description

Definition at line 104 of file arb_gene_probe.cxx.

Constructor & Destructor Documentation

GenePositionMap::GenePositionMap ( )

inline

Definition at line 111 of file arb_gene_probe.cxx.

Member Function Documentation

void GenePositionMap::announceGene

(

PositionPair

gene

)

Definition at line 126 of file arb_gene_probe.cxx.

References gp_assert, PositionPair::length(), max, min, and PositionPair::overlapsWith().

Referenced by insert_genes_of_organism().

GB_ERROR GenePositionMap::buildIntergeneList	(	const PositionPair &	wholeGenome,
		PositionPairList &	intergeneList
	)		const

Definition at line 155 of file arb_gene_probe.cxx.

References PositionPair::begin, PositionPair::end, and NULp.

Referenced by insert_genes_of_organism().

unsigned long GenePositionMap::getOverlap ( ) const

inline

Definition at line 115 of file arb_gene_probe.cxx.

Referenced by insert_genes_of_organism().

unsigned long GenePositionMap::getAllGeneSize ( ) const

inline

Definition at line 116 of file arb_gene_probe.cxx.

Referenced by insert_genes_of_organism().

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The documentation for this class was generated from the following file:

• TOOLS/arb_gene_probe.cxx