AliChange Class Reference

Public Member Functions
	AliChange (const CompactedSubSequence &old_, const CompactedSubSequence &new_)
int	follow (ExplicitRange &range) const

Detailed Description

Definition at line 269 of file fast_aligner.cxx.

Constructor & Destructor Documentation

AliChange::AliChange ( const CompactedSubSequence &  old_, const CompactedSubSequence &  new_  )

inline

Definition at line 274 of file fast_aligner.cxx.

References fa_assert(), and CompactedSubSequence::may_refer_to_same_part_as().

Member Function Documentation

int AliChange::follow ( ExplicitRange &  range ) const

inline

Definition at line 280 of file fast_aligner.cxx.

References CompactedSubSequence::compPosition(), PosRange::end(), CompactedSubSequence::expdPosition(), fa_assert(), CompactedSubSequence::no_of_gaps_after(), CompactedSubSequence::no_of_gaps_before(), PosRange::size(), and PosRange::start().

Referenced by LooseBases::follow_ali_change().

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The documentation for this class was generated from the following file:

• SL/FAST_ALIGNER/fast_aligner.cxx