FilteredExport Class Reference

#include <FilteredExport.h>

Inheritance diagram for FilteredExport:

Collaboration diagram for FilteredExport:

Public Member Functions
	FilteredExport (GBDATA *gb_main_, const char *aliname_, size_t alisize_)
	~FilteredExport ()
void	do_accept_missing_data ()
void	set_required_baseCount (const char *basesToCount, int minCount_)
void	reset_required_baseCount ()
void	set_header_ACI (const char *aci)
void	set_sequence_ACI (const char *aci)
GB_ERROR	add_SAI_filter (const FilterDefinition &filterDef) __ATTR__USERESULT
void	clear_SAI_filters ()
const char *	get_aliname () const
GB_ERROR	write_fasta (FILE *out)

Detailed Description

Definition at line 109 of file FilteredExport.h.

Constructor & Destructor Documentation

FilteredExport::FilteredExport	(	GBDATA *	gb_main_,
		const char *	aliname_,
		size_t	alisize_
	)

Definition at line 62 of file FilteredExport.cxx.

FilteredExport::~FilteredExport

(

)

Definition at line 75 of file FilteredExport.cxx.

Member Function Documentation

void FilteredExport::do_accept_missing_data ( )

inline

Definition at line 141 of file FilteredExport.h.

Referenced by export_seq_data().

void FilteredExport::set_required_baseCount ( const char *  basesToCount, int  minCount_  )

inline

Definition at line 142 of file FilteredExport.h.

References arb_assert, and implicated.

Referenced by export_seq_data(), and reset_required_baseCount().

void FilteredExport::reset_required_baseCount ( )

inline

Definition at line 147 of file FilteredExport.h.

References NULp, and set_required_baseCount().

void FilteredExport::set_header_ACI ( const char *  aci )

inline

Definition at line 148 of file FilteredExport.h.

Referenced by export_seq_data().

void FilteredExport::set_sequence_ACI ( const char *  aci )

inline

Definition at line 149 of file FilteredExport.h.

Referenced by export_seq_data().

GB_ERROR FilteredExport::add_SAI_filter

(

const FilterDefinition &

filterDef

)

Definition at line 81 of file FilteredExport.cxx.

References AND, BLOCK, GB_await_error(), FilterDefinition::get_type(), FilterDefinition::make_filter(), NULp, OR, and PASS.

Referenced by CLI::add_filters_to().

void FilteredExport::clear_SAI_filters ( )

inline

Definition at line 151 of file FilteredExport.h.

const char* FilteredExport::get_aliname ( ) const

inline

Definition at line 157 of file FilteredExport.h.

GB_ERROR FilteredExport::write_fasta

(

FILE *

out

)

Definition at line 179 of file FilteredExport.cxx.

References arb_progress::done(), error(), fputc(), fputs(), GB_await_error(), GBT_first_species(), GBT_get_name_or_description(), GBT_get_species_count(), GBT_next_species(), and NULp.

Referenced by export_seq_data().

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The documentation for this class was generated from the following files:

• SL/FILTSEQEXP/FilteredExport.h
• SL/FILTSEQEXP/FilteredExport.cxx