ARB: PT_compressed Class Reference

ARB

#include <PT_compress.h>

Inheritance diagram for PT_compressed:

Inheritance graph

Collaboration diagram for PT_compressed:

Collaboration graph

Public Member Functions
	PT_compressed (size_t max_input_length_)

	~PT_compressed ()

void	createFrom (const unsigned char *const seq, const size_t length)

void	createFrom (const char *const seq, const size_t length)

size_t	get_size () const

size_t	get_allowed_size () const

const char *	get_seq () const

const unsigned *	get_offsets () const

Detailed Description

Definition at line 78 of file PT_compress.h.

Constructor & Destructor Documentation

PT_compressed::PT_compressed ( size_t max_input_length_ )

inline

Definition at line 107 of file PT_compress.h.

PT_compressed::~PT_compressed ( )

inline

Definition at line 115 of file PT_compress.h.

Member Function Documentation

void PT_compressed::createFrom	(	const unsigned char *const	seq,
		const size_t	length
	)

inline

Definition at line 120 of file PT_compress.h.

References count_gaps(), count_gaps_and_dots(), length, offset, pt_assert, PT_B_UNDEF, PT_N, and PT_QU.

Referenced by createFrom(), probe_compress_sequence(), and PT_prepare_species_sequence().

void PT_compressed::createFrom	(	const char *const	seq,
		const size_t	length
	)

inline

Definition at line 177 of file PT_compress.h.

References createFrom().

size_t PT_compressed::get_size ( ) const

inline

Definition at line 181 of file PT_compress.h.

Referenced by probe_compress_sequence(), and PT_prepare_species_sequence().

size_t PT_compressed::get_allowed_size ( ) const

inline

Definition at line 182 of file PT_compress.h.

Referenced by PT_prepare_species_sequence().

const char* PT_compressed::get_seq ( ) const

inline

Definition at line 183 of file PT_compress.h.

Referenced by probe_compress_sequence(), and PT_prepare_species_sequence().

const unsigned* PT_compressed::get_offsets ( ) const

inline

Definition at line 184 of file PT_compress.h.

Referenced by PT_prepare_species_sequence().

The documentation for this class was generated from the following files:

PROBE/PT_compress.h
PROBE/PT_io.cxx