ARB
Classes | Enumerations | Functions
SEQIO Namespace Reference

Classes

struct  ExportFormatInfo
 

Enumerations

enum  ExportWhich { EBF_ALL, EBF_MARKED, EBF_ONE }
 

Functions

GB_ERROR export_by_format (GBDATA *gb_main, ExportWhich which, const char *one_species, AP_filter *filter, int cut_stop_codon, int compress, const char *dbname, const char *formname, const char *field_transfer_set, const char *outname, int multiple, char **real_outname)
 
GB_ERROR get_exportFormat_information (const char *eft_formname, ExportFormatInfo &info)
 
charget_exportFormat_evalForm (const char *eft_formname, GB_ERROR &error)
 
charfgets_smartLF (char *s, int size, FILE *stream)
 
bool read_string_pair (FILE *in, char *&s1, char *&s2, size_t &lineNr)
 
void appendTo (char *&content, char sep, char *&toAppend)
 

Enumeration Type Documentation

Enumerator
EBF_ALL 
EBF_MARKED 
EBF_ONE 

Definition at line 28 of file seqio.hxx.

Function Documentation

GB_ERROR SEQIO::export_by_format ( GBDATA gb_main,
ExportWhich  which,
const char one_species,
AP_filter filter,
int  cut_stop_codon,
int  compress,
const char dbname,
const char formname,
const char field_transfer_set,
const char outname,
int  multiple,
char **  real_outname 
)
GB_ERROR SEQIO::get_exportFormat_information ( const char eft_formname,
ExportFormatInfo info 
)
char * SEQIO::get_exportFormat_evalForm ( const char eft_formname,
GB_ERROR error 
)
char * SEQIO::fgets_smartLF ( char s,
int  size,
FILE *  stream 
)

Definition at line 19 of file seqio.cxx.

References NULp, and s.

Referenced by ArbImporter::read_line(), and read_string_pair().

bool SEQIO::read_string_pair ( FILE *  in,
char *&  s1,
char *&  s2,
size_t &  lineNr 
)

Definition at line 37 of file seqio.cxx.

References buffer, BUFSIZE, fgets_smartLF(), NULp, and sio_assert.

Referenced by read_export_format(), and read_import_format().

void SEQIO::appendTo ( char *&  content,
char  sep,
char *&  toAppend 
)
inline

Definition at line 34 of file seqio.hxx.

References GBS_global_string_copy().

Referenced by read_export_format(), and read_import_format().