ARB
Public Member Functions | List of all members
ArbParsimony Class Reference

#include <pars_main.hxx>

Public Member Functions

 ArbParsimony ()
 
AWT_graphic_parsimonyget_tree () const
 
 DEFINE_READ_ACCESSORS (AP_tree_nlen *, get_root_node, get_tree() ->get_root_node())
 
void generate_tree (WeightedFilter *pars_weighted_filter)
 
void set_tree (AWT_graphic_parsimony *tree_)
 
void optimize_tree (AP_tree_nlen *at, const KL_Settings &settings, arb_progress &progress)
 
void kernighan_optimize_tree (AP_tree_nlen *at, const KL_Settings &settings, const Mutations *pars_global_start, bool dumpPerf)
 

Detailed Description

Definition at line 25 of file pars_main.hxx.

Constructor & Destructor Documentation

ArbParsimony::ArbParsimony ( )
inline

Definition at line 29 of file pars_main.hxx.

Member Function Documentation

AWT_graphic_parsimony* ArbParsimony::get_tree ( ) const
inline

Definition at line 31 of file pars_main.hxx.

Referenced by global_tree().

ArbParsimony::DEFINE_READ_ACCESSORS ( AP_tree_nlen *  ,
get_root_node  ,
get_tree() ->get_root_node()   
)
void ArbParsimony::generate_tree ( WeightedFilter pars_weighted_filter)
void ArbParsimony::set_tree ( AWT_graphic_parsimony tree_)

Definition at line 66 of file PARS_main.cxx.

References ap_assert, and AP_main::set_tree_root().

Referenced by generate_tree().

void ArbParsimony::optimize_tree ( AP_tree_nlen *  at,
const KL_Settings settings,
arb_progress progress 
)
void ArbParsimony::kernighan_optimize_tree ( AP_tree_nlen *  at,
const KL_Settings settings,
const Mutations pars_global_start,
bool  dumpPerf 
)

The documentation for this class was generated from the following files: