ARB
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#include <ali_sequence.hxx>
Public Member Functions | |
ALI_SEQUENCE (char *Name, char *str) | |
ALI_SEQUENCE (char *Name, unsigned char *str, unsigned long str_len) | |
~ALI_SEQUENCE () | |
unsigned char * | sequence () |
unsigned char | base (unsigned long position) |
int | check () |
char * | string () |
char * | name () |
unsigned long | length () |
Definition at line 22 of file ali_sequence.hxx.
Definition at line 27 of file ali_sequence.hxx.
References ali_out_of_memory_if(), and ali_string_to_sequence().
Definition at line 34 of file ali_sequence.hxx.
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inline |
Definition at line 39 of file ali_sequence.hxx.
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inline |
Definition at line 45 of file ali_sequence.hxx.
Referenced by ALI_NORM_SEQUENCE::ALI_NORM_SEQUENCE().
Definition at line 48 of file ali_sequence.hxx.
Referenced by ALI_PROFILE::w_binding().
int ALI_SEQUENCE::check | ( | ) |
Definition at line 18 of file ali_sequence.cxx.
References ali_fatal_error().
char * ALI_SEQUENCE::string | ( | ) |
Definition at line 30 of file ali_sequence.cxx.
References ali_sequence_to_string(), and CALLOC().
Referenced by ARB_main(), ALI_PT::find_family(), and ALI_ARBDB::put_sequence().
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inline |
Definition at line 53 of file ali_sequence.hxx.
Referenced by ALI_NORM_SEQUENCE::ALI_NORM_SEQUENCE(), and ALI_PT::find_family().
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inline |
Definition at line 56 of file ali_sequence.hxx.
Referenced by ALI_NORM_SEQUENCE::ALI_NORM_SEQUENCE(), and ALI_PROFILE::w_binding().