ARB: AlignDataAccess Struct Reference

ARB

#include <fast_aligner.hxx>

Collaboration diagram for AlignDataAccess:

Collaboration graph

Public Member Functions
char *	getHelixString () const

	AlignDataAccess (GBDATA gb_main_, const char alignment_name_, bool do_refresh_, void(*refresh_display_)(), Aligner_get_consensus_func get_group_consensus_, Aligner_get_selected_range get_selected_range_, Aligner_get_first_selected_species get_first_selected_species_, Aligner_get_next_selected_species get_next_selected_species_, Aligner_get_helix_string get_helix_string_)

	AlignDataAccess (const AlignDataAccess &other)

	DECLARE_ASSIGNMENT_OPERATOR (AlignDataAccess)

Public Attributes
GBDATA *	gb_main

std::string	alignment_name

bool	do_refresh

void(*	refresh_display )()

Aligner_get_consensus_func	get_group_consensus

Aligner_get_selected_range	get_selected_range

Aligner_get_first_selected_species	get_first_selected_species

Aligner_get_next_selected_species	get_next_selected_species

Aligner_get_helix_string	get_helix_string

Detailed Description

Definition at line 36 of file fast_aligner.hxx.

Constructor & Destructor Documentation

AlignDataAccess::AlignDataAccess	(	GBDATA *	gb_main_,
		const char *	alignment_name_,
		bool	do_refresh_,
		void(*)()	refresh_display_,
		Aligner_get_consensus_func	get_group_consensus_,
		Aligner_get_selected_range	get_selected_range_,
		Aligner_get_first_selected_species	get_first_selected_species_,
		Aligner_get_next_selected_species	get_next_selected_species_,
		Aligner_get_helix_string	get_helix_string_
	)

inline

Definition at line 52 of file fast_aligner.hxx.

AlignDataAccess::AlignDataAccess ( const AlignDataAccess & other )

inline

Definition at line 72 of file fast_aligner.hxx.

Member Function Documentation

char* AlignDataAccess::getHelixString ( ) const

inline

Definition at line 50 of file fast_aligner.hxx.

References get_helix_string.

Referenced by FastAligner_start().

AlignDataAccess::DECLARE_ASSIGNMENT_OPERATOR ( AlignDataAccess )

Member Data Documentation

GBDATA* AlignDataAccess::gb_main

Definition at line 37 of file fast_aligner.hxx.

Referenced by build_reverse_complement(), FastAligner_create_window(), FastAligner_start(), new_sina_simple(), and sina_start().

std::string AlignDataAccess::alignment_name

Definition at line 39 of file fast_aligner.hxx.

Referenced by build_reverse_complement(), FastAligner_start(), new_sina_simple(), and sina_start().

bool AlignDataAccess::do_refresh

Definition at line 41 of file fast_aligner.hxx.

Referenced by FastAligner_start().

void(* AlignDataAccess::refresh_display)()

Definition at line 42 of file fast_aligner.hxx.

Referenced by FastAligner_start().

Aligner_get_consensus_func AlignDataAccess::get_group_consensus

Definition at line 44 of file fast_aligner.hxx.

Referenced by FastAligner_start().

Aligner_get_selected_range AlignDataAccess::get_selected_range

Definition at line 45 of file fast_aligner.hxx.

Referenced by FastAligner_start().

Aligner_get_first_selected_species AlignDataAccess::get_first_selected_species

Definition at line 46 of file fast_aligner.hxx.

Referenced by build_reverse_complement(), FastAligner_start(), and sina_start().

Aligner_get_next_selected_species AlignDataAccess::get_next_selected_species

Definition at line 47 of file fast_aligner.hxx.

Referenced by build_reverse_complement(), FastAligner_start(), and sina_start().

Aligner_get_helix_string AlignDataAccess::get_helix_string

Definition at line 48 of file fast_aligner.hxx.

Referenced by getHelixString().

The documentation for this struct was generated from the following file:

SL/FAST_ALIGNER/fast_aligner.hxx