LikelihoodRanges Class Reference

#include <st_quality.hxx>

Inheritance diagram for LikelihoodRanges:

Collaboration diagram for LikelihoodRanges:

Public Member Functions
	LikelihoodRanges (size_t ranges)
	~LikelihoodRanges ()
size_t	get_range_count () const
void	add (size_t range, double probability)
void	add_relative (double seq_rel_pos, double probability)
VarianceSampler	summarize_all_ranges ()
char *	generate_string (Sampler &t_values)

Detailed Description

Definition at line 66 of file st_quality.hxx.

Constructor & Destructor Documentation

LikelihoodRanges::LikelihoodRanges

(

size_t

ranges

)

Definition at line 29 of file ST_quality.cxx.

LikelihoodRanges::~LikelihoodRanges ( )

inline

Definition at line 76 of file st_quality.hxx.

Member Function Documentation

size_t LikelihoodRanges::get_range_count ( ) const

inline

Definition at line 78 of file st_quality.hxx.

Referenced by ColumnQualityInfo::overall_range_count().

void LikelihoodRanges::add ( size_t  range, double  probability  )

inline

Definition at line 80 of file st_quality.hxx.

References VarianceSampler::add(), and st_assert.

Referenced by add_relative().

void LikelihoodRanges::add_relative ( double  seq_rel_pos, double  probability  )

inline

Definition at line 84 of file st_quality.hxx.

References add(), and st_assert.

Referenced by st_ml_add_sequence_part_to_stat().

VarianceSampler LikelihoodRanges::summarize_all_ranges

(

)

Definition at line 34 of file ST_quality.cxx.

References VarianceSampler::add().

Referenced by generate_string().

char * LikelihoodRanges::generate_string

(

Sampler &

t_values

)

Definition at line 42 of file ST_quality.cxx.

References Sampler::add(), Sampler::get_count(), Sampler::get_median(), VarianceSampler::get_variance(), and summarize_all_ranges().

Referenced by st_ml_add_quality_string_to_species().

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The documentation for this class was generated from the following files:

• STAT/st_quality.hxx
• STAT/ST_quality.cxx