#include <GDE_def.h>
Public Attributes | |
| char | id [SIZE_ID] |
| char | seq_name [SIZE_SEQ_NAME] |
| char | short_name [SIZE_SHORT_NAME] |
| char | barcode [80] |
| char | contig [80] |
| char | membrane [80] |
| char | description [SIZE_DESCRIPTION] |
| char | authority [SIZE_AUTHORITY] |
| char * | comments |
| int | comments_len |
| int | comments_maxlen |
| NA_Base * | sequence |
| TimeStamp | t_stamp |
| int | offset |
| int | seqlen |
| int | seqmaxlen |
| int | attr |
| size_t | groupid |
| int * | col_lut |
| NA_Sequence * | groupb |
| NA_Sequence * | groupf |
| int | elementtype |
| char * | baggage |
| int | baggage_len |
| int | baggage_maxlen |
| int * | tmatrix |
| int * | rmatrix |
| GBDATA * | gb_species |
Detailed Description
Member Data Documentation
Definition at line 84 of file GDE_def.h.
Referenced by InitNASeq(), InsertDatainGDE(), ReadGen(), WriteGDE(), and WriteGen().
| char NA_Sequence::seq_name[SIZE_SEQ_NAME] |
Definition at line 85 of file GDE_def.h.
Referenced by InitNASeq(), InsertDatainGDE(), ReadGen(), WriteGDE(), and WriteGen().
| char NA_Sequence::short_name[SIZE_SHORT_NAME] |
Definition at line 86 of file GDE_def.h.
Referenced by export_to_DB(), InitNASeq(), InsertDatainGDE(), ReadGen(), ReadNA_Flat(), WriteGDE(), and WriteGen().
| char NA_Sequence::barcode[80] |
Definition at line 87 of file GDE_def.h.
Referenced by InitNASeq(), and WriteGDE().
| char NA_Sequence::contig[80] |
Definition at line 88 of file GDE_def.h.
Referenced by InitNASeq(), and WriteGDE().
| char NA_Sequence::membrane[80] |
Definition at line 89 of file GDE_def.h.
Referenced by InitNASeq(), and WriteGDE().
| char NA_Sequence::description[SIZE_DESCRIPTION] |
Definition at line 90 of file GDE_def.h.
Referenced by InitNASeq(), ReadGen(), WriteGDE(), and WriteGen().
| char NA_Sequence::authority[SIZE_AUTHORITY] |
Definition at line 91 of file GDE_def.h.
Referenced by InitNASeq(), InsertDatainGDE(), ReadGen(), WriteGDE(), and WriteGen().
| char* NA_Sequence::comments |
Definition at line 92 of file GDE_def.h.
Referenced by GDE_freesequ(), InitNASeq(), ReadGen(), set_constant_fields(), WriteGDE(), and WriteGen().
| int NA_Sequence::comments_len |
Definition at line 93 of file GDE_def.h.
Referenced by InitNASeq(), ReadGen(), and set_constant_fields().
| int NA_Sequence::comments_maxlen |
Definition at line 93 of file GDE_def.h.
Referenced by InitNASeq(), ReadGen(), and set_constant_fields().
| NA_Base* NA_Sequence::sequence |
Definition at line 95 of file GDE_def.h.
Referenced by AppendNA(), export_to_DB(), GDE_freesequ(), getelem(), InitNASeq(), putelem(), and ReadGen().
| TimeStamp NA_Sequence::t_stamp |
Definition at line 96 of file GDE_def.h.
Referenced by InitNASeq(), ReadGen(), WriteGDE(), and WriteGen().
| int NA_Sequence::offset |
Definition at line 97 of file GDE_def.h.
Referenced by AppendNA(), getelem(), InitNASeq(), InsertDatainGDE(), NormalizeOffset(), putelem(), ReadGen(), ReadNA_Flat(), WriteGDE(), WriteGen(), and WriteNA_Flat().
| int NA_Sequence::seqlen |
Definition at line 98 of file GDE_def.h.
Referenced by AppendNA(), export_to_DB(), getelem(), InitNASeq(), InsertDatainGDE(), NormalizeOffset(), putelem(), ReadGen(), ReadNA_Flat(), WriteGen(), and WriteNA_Flat().
| int NA_Sequence::seqmaxlen |
Definition at line 99 of file GDE_def.h.
Referenced by AppendNA(), InitNASeq(), and putelem().
| int NA_Sequence::attr |
Definition at line 100 of file GDE_def.h.
Referenced by InitNASeq(), ReadGen(), set_constant_fields(), WriteGDE(), and WriteGen().
| size_t NA_Sequence::groupid |
Definition at line 101 of file GDE_def.h.
Referenced by InitNASeq(), Regroup(), and WriteGDE().
| int* NA_Sequence::col_lut |
Definition at line 102 of file GDE_def.h.
Referenced by InitNASeq(), ReadGen(), and set_constant_fields().
| NA_Sequence* NA_Sequence::groupb |
Definition at line 104 of file GDE_def.h.
Referenced by InitNASeq(), and Regroup().
| NA_Sequence* NA_Sequence::groupf |
Definition at line 105 of file GDE_def.h.
Referenced by InitNASeq(), and Regroup().
| int NA_Sequence::elementtype |
Definition at line 107 of file GDE_def.h.
Referenced by export_to_DB(), getelem(), InitNASeq(), InsertDatainGDE(), putelem(), ReadGen(), WriteGDE(), and WriteGen().
| char* NA_Sequence::baggage |
Definition at line 108 of file GDE_def.h.
Referenced by GDE_freesequ(), InitNASeq(), and WriteGDE().
| int NA_Sequence::baggage_len |
Definition at line 109 of file GDE_def.h.
Referenced by InitNASeq().
| int NA_Sequence::baggage_maxlen |
Definition at line 109 of file GDE_def.h.
Referenced by InitNASeq().
| int* NA_Sequence::tmatrix |
Definition at line 110 of file GDE_def.h.
Referenced by export_to_DB(), InitNASeq(), ReadGen(), set_constant_fields(), WriteGDE(), and WriteGen().
| int* NA_Sequence::rmatrix |
Definition at line 111 of file GDE_def.h.
Referenced by InitNASeq(), ReadGen(), ReadNA_Flat(), and set_constant_fields().
| GBDATA* NA_Sequence::gb_species |
Definition at line 113 of file GDE_def.h.
Referenced by export_to_DB(), and InsertDatainGDE().
The documentation for this struct was generated from the following file:
- ARB_GDE/GDE_def.h
