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Public Attributes | List of all members
NA_Sequence Struct Reference

#include <GDE_def.h>

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Public Attributes

char id [SIZE_ID]
 
char seq_name [SIZE_SEQ_NAME]
 
char short_name [SIZE_SHORT_NAME]
 
char barcode [80]
 
char contig [80]
 
char membrane [80]
 
char description [SIZE_DESCRIPTION]
 
char authority [SIZE_AUTHORITY]
 
charcomments
 
int comments_len
 
int comments_maxlen
 
NA_Basesequence
 
TimeStamp t_stamp
 
int offset
 
int seqlen
 
int seqmaxlen
 
int attr
 
size_t groupid
 
intcol_lut
 
NA_Sequencegroupb
 
NA_Sequencegroupf
 
int elementtype
 
charbaggage
 
int baggage_len
 
int baggage_maxlen
 
inttmatrix
 
intrmatrix
 
GBDATAgb_species
 

Detailed Description

Definition at line 83 of file GDE_def.h.

Member Data Documentation

char NA_Sequence::id[SIZE_ID]

Definition at line 84 of file GDE_def.h.

Referenced by InitNASeq(), InsertDatainGDE(), ReadGen(), WriteGDE(), and WriteGen().

char NA_Sequence::seq_name[SIZE_SEQ_NAME]

Definition at line 85 of file GDE_def.h.

Referenced by InitNASeq(), InsertDatainGDE(), ReadGen(), WriteGDE(), and WriteGen().

char NA_Sequence::short_name[SIZE_SHORT_NAME]
char NA_Sequence::barcode[80]

Definition at line 87 of file GDE_def.h.

Referenced by InitNASeq(), and WriteGDE().

char NA_Sequence::contig[80]

Definition at line 88 of file GDE_def.h.

Referenced by InitNASeq(), and WriteGDE().

char NA_Sequence::membrane[80]

Definition at line 89 of file GDE_def.h.

Referenced by InitNASeq(), and WriteGDE().

char NA_Sequence::description[SIZE_DESCRIPTION]

Definition at line 90 of file GDE_def.h.

Referenced by InitNASeq(), ReadGen(), WriteGDE(), and WriteGen().

char NA_Sequence::authority[SIZE_AUTHORITY]

Definition at line 91 of file GDE_def.h.

Referenced by InitNASeq(), InsertDatainGDE(), ReadGen(), WriteGDE(), and WriteGen().

char* NA_Sequence::comments

Definition at line 92 of file GDE_def.h.

Referenced by GDE_freesequ(), InitNASeq(), ReadGen(), set_constant_fields(), WriteGDE(), and WriteGen().

int NA_Sequence::comments_len

Definition at line 93 of file GDE_def.h.

Referenced by InitNASeq(), ReadGen(), and set_constant_fields().

int NA_Sequence::comments_maxlen

Definition at line 93 of file GDE_def.h.

Referenced by InitNASeq(), ReadGen(), and set_constant_fields().

NA_Base* NA_Sequence::sequence

Definition at line 95 of file GDE_def.h.

Referenced by AppendNA(), export_to_DB(), GDE_freesequ(), getelem(), InitNASeq(), putelem(), and ReadGen().

TimeStamp NA_Sequence::t_stamp

Definition at line 96 of file GDE_def.h.

Referenced by InitNASeq(), ReadGen(), WriteGDE(), and WriteGen().

int NA_Sequence::offset
int NA_Sequence::seqlen
int NA_Sequence::seqmaxlen

Definition at line 99 of file GDE_def.h.

Referenced by AppendNA(), InitNASeq(), and putelem().

int NA_Sequence::attr

Definition at line 100 of file GDE_def.h.

Referenced by InitNASeq(), ReadGen(), set_constant_fields(), WriteGDE(), and WriteGen().

size_t NA_Sequence::groupid

Definition at line 101 of file GDE_def.h.

Referenced by InitNASeq(), Regroup(), and WriteGDE().

int* NA_Sequence::col_lut

Definition at line 102 of file GDE_def.h.

Referenced by InitNASeq(), ReadGen(), and set_constant_fields().

NA_Sequence* NA_Sequence::groupb

Definition at line 104 of file GDE_def.h.

Referenced by InitNASeq(), and Regroup().

NA_Sequence* NA_Sequence::groupf

Definition at line 105 of file GDE_def.h.

Referenced by InitNASeq(), and Regroup().

int NA_Sequence::elementtype
char* NA_Sequence::baggage

Definition at line 108 of file GDE_def.h.

Referenced by GDE_freesequ(), InitNASeq(), and WriteGDE().

int NA_Sequence::baggage_len

Definition at line 109 of file GDE_def.h.

Referenced by InitNASeq().

int NA_Sequence::baggage_maxlen

Definition at line 109 of file GDE_def.h.

Referenced by InitNASeq().

int* NA_Sequence::tmatrix

Definition at line 110 of file GDE_def.h.

Referenced by export_to_DB(), InitNASeq(), ReadGen(), set_constant_fields(), WriteGDE(), and WriteGen().

int* NA_Sequence::rmatrix

Definition at line 111 of file GDE_def.h.

Referenced by InitNASeq(), ReadGen(), ReadNA_Flat(), and set_constant_fields().

GBDATA* NA_Sequence::gb_species

Definition at line 113 of file GDE_def.h.

Referenced by export_to_DB(), and InsertDatainGDE().


The documentation for this struct was generated from the following file: