ALI_PROFILE_CONTEXT Struct Reference

#include <ali_profile.hxx>

Collaboration diagram for ALI_PROFILE_CONTEXT:

Public Attributes
ALI_ARBDB *	arbdb
ALI_PT *	pt
int	find_family_mode
int	exclusive_flag
int	mark_family_flag
int	mark_family_extension_flag
int	min_family_size
int	max_family_size
float	min_weight
float	ext_max_weight
float	multi_gap_factor
float	insert_factor
float	multi_insert_factor
double	substitute_matrix [5][5]
double	binding_matrix [5][5]

Detailed Description

Definition at line 27 of file ali_profile.hxx.

Member Data Documentation

ALI_ARBDB* ALI_PROFILE_CONTEXT::arbdb

Definition at line 28 of file ali_profile.hxx.

Referenced by ALI_GLOBAL::init().

ALI_PT* ALI_PROFILE_CONTEXT::pt

Definition at line 29 of file ali_profile.hxx.

Referenced by ALI_GLOBAL::init().

int ALI_PROFILE_CONTEXT::find_family_mode

Definition at line 31 of file ali_profile.hxx.

Referenced by ALI_GLOBAL::init().

int ALI_PROFILE_CONTEXT::exclusive_flag

Definition at line 33 of file ali_profile.hxx.

Referenced by ALI_GLOBAL::init().

int ALI_PROFILE_CONTEXT::mark_family_flag

Definition at line 34 of file ali_profile.hxx.

Referenced by ALI_GLOBAL::init().

int ALI_PROFILE_CONTEXT::mark_family_extension_flag

Definition at line 35 of file ali_profile.hxx.

Referenced by ALI_GLOBAL::init().

int ALI_PROFILE_CONTEXT::min_family_size

Definition at line 37 of file ali_profile.hxx.

Referenced by ALI_GLOBAL::init().

int ALI_PROFILE_CONTEXT::max_family_size

Definition at line 38 of file ali_profile.hxx.

Referenced by ALI_GLOBAL::init().

float ALI_PROFILE_CONTEXT::min_weight

Definition at line 40 of file ali_profile.hxx.

Referenced by ALI_GLOBAL::init().

float ALI_PROFILE_CONTEXT::ext_max_weight

Definition at line 41 of file ali_profile.hxx.

Referenced by ALI_GLOBAL::init().

float ALI_PROFILE_CONTEXT::multi_gap_factor

Definition at line 43 of file ali_profile.hxx.

Referenced by ALI_PROFILE::ALI_PROFILE(), and ALI_GLOBAL::init().

float ALI_PROFILE_CONTEXT::insert_factor

Definition at line 45 of file ali_profile.hxx.

Referenced by ALI_PROFILE::ALI_PROFILE(), and ALI_GLOBAL::init().

float ALI_PROFILE_CONTEXT::multi_insert_factor

Definition at line 46 of file ali_profile.hxx.

Referenced by ALI_PROFILE::ALI_PROFILE(), and ALI_GLOBAL::init().

double ALI_PROFILE_CONTEXT::substitute_matrix[5][5]

Definition at line 48 of file ali_profile.hxx.

Referenced by ALI_GLOBAL::init().

double ALI_PROFILE_CONTEXT::binding_matrix[5][5]

Definition at line 49 of file ali_profile.hxx.

Referenced by ALI_GLOBAL::init().

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The documentation for this struct was generated from the following file:

• NALIGNER/ali_profile.hxx