#include <PRD_Range.hxx>

Public Member Functions
	Range (const PRD_Sequence_Pos value1_, const PRD_Sequence_Pos value2_)

	Range ()

	~Range ()

PRD_Sequence_Pos	min () const

PRD_Sequence_Pos	max () const

PRD_Sequence_Pos	range ()

void	min (PRD_Sequence_Pos new_min_)

void	max (PRD_Sequence_Pos new_max_)

bool	includes (PRD_Sequence_Pos value_)

bool	includes (PRD_Sequence_Pos min_, PRD_Sequence_Pos max_)

void	print (const char prefix_, const char suffix_)

	Range (int start_, int end_, int probe_len_)

	Range (const Range &other)

	DECLARE_ASSIGNMENT_OPERATOR (Range)

bool	contains (const AbsLoc &match) const

Detailed Description

Definition at line 8 of file PRD_Range.hxx.

Constructor & Destructor Documentation

Range::Range	(	const PRD_Sequence_Pos	value1_,
		const PRD_Sequence_Pos	value2_
	)

Definition at line 9 of file PRD_Range.cxx.

Range::Range ( )

Definition at line 14 of file PRD_Range.cxx.

Range::~Range ( )

inline

Definition at line 16 of file PRD_Range.hxx.

Range::Range	(	int	start_,
		int	end_,
		int	probe_len_
	)

inline

Definition at line 52 of file PT_rangeCheck.h.

Range::Range ( const Range & other )

inline

Definition at line 58 of file PT_rangeCheck.h.

Member Function Documentation

PRD_Sequence_Pos Range::min ( ) const

inline

Definition at line 18 of file PRD_Range.hxx.

Referenced by PrimerDesign::buildPrimerTrees(), PrimerDesign::convertTreesToLists(), PrimerDesign::setConditionalParameters(), and PrimerDesign::setPositionalParameters().

PRD_Sequence_Pos Range::max ( ) const

inline

Definition at line 19 of file PRD_Range.hxx.

Referenced by PrimerDesign::buildPrimerTrees(), PrimerDesign::get_max_primer_length(), PrimerDesign::get_max_primer_pos(), PrimerDesign::setConditionalParameters(), and PrimerDesign::setPositionalParameters().

PRD_Sequence_Pos Range::range ( )

inline

Definition at line 20 of file PRD_Range.hxx.

void Range::min ( PRD_Sequence_Pos new_min_ )

inline

Definition at line 21 of file PRD_Range.hxx.

void Range::max ( PRD_Sequence_Pos new_max_ )

inline

Definition at line 22 of file PRD_Range.hxx.

bool Range::includes ( PRD_Sequence_Pos value_ )

Definition at line 23 of file PRD_Range.cxx.

Referenced by PrimerDesign::convertTreesToLists(), and PrimerDesign::matchSequenceAgainstPrimerTrees().

bool Range::includes	(	PRD_Sequence_Pos	min_,
		PRD_Sequence_Pos	max_
	)

Definition at line 33 of file PRD_Range.cxx.

void Range::print	(	const char *	prefix_,
		const char *	suffix_
	)

Definition at line 41 of file PRD_Range.cxx.

Referenced by PrimerDesign::buildPrimerTrees(), PrimerDesign::convertTreesToLists(), and PrimerDesign::run().

Range::DECLARE_ASSIGNMENT_OPERATOR ( Range )

bool Range::contains ( const AbsLoc & match ) const

inline

Definition at line 66 of file PT_rangeCheck.h.

References NULp.

The documentation for this class was generated from the following files:

PRIMER_DESIGN/PRD_Range.hxx
PROBE/PT_rangeCheck.h
PRIMER_DESIGN/PRD_Range.cxx
PROBE/PT_rangeCheck.cxx

Public Member Functions

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation