ConsensusBuildParams Struct Reference

#include <consensus.h>

Collaboration diagram for ConsensusBuildParams:

Public Member Functions
void	make_valid ()

Static Public Member Functions
static void	force_in_range (int low, int &val, int high)

Public Attributes
bool	countgaps
int	gapbound
bool	group
int	considbound
int	upper
int	lower

Detailed Description

Definition at line 29 of file consensus.h.

Member Function Documentation

static void ConsensusBuildParams::force_in_range ( int  low, int &  val, int  high  )

inlinestatic

Definition at line 37 of file consensus.h.

References max, and min.

Referenced by make_valid().

void ConsensusBuildParams::make_valid ( )

inline

Definition at line 41 of file consensus.h.

References force_in_range().

Member Data Documentation

bool ConsensusBuildParams::countgaps

Definition at line 30 of file consensus.h.

Referenced by BaseFrequencies::build_consensus_string_to(), and CON_export().

int ConsensusBuildParams::gapbound

Definition at line 31 of file consensus.h.

Referenced by BaseFrequencies::build_consensus_string_to(), and CON_export().

bool ConsensusBuildParams::group

Definition at line 32 of file consensus.h.

Referenced by BaseFrequencies::build_consensus_string_to(), and CON_export().

int ConsensusBuildParams::considbound

Definition at line 33 of file consensus.h.

Referenced by BaseFrequencies::build_consensus_string_to(), and CON_export().

int ConsensusBuildParams::upper

Definition at line 34 of file consensus.h.

Referenced by BaseFrequencies::build_consensus_string_to(), CON_calculate(), and CON_export().

int ConsensusBuildParams::lower

Definition at line 35 of file consensus.h.

Referenced by BaseFrequencies::build_consensus_string_to(), CON_calculate(), and CON_export().

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The documentation for this struct was generated from the following file:

• SL/CONSENSUS/consensus.h