ProbeMatchParser Class Reference

#include <probe_match_parser.hxx>

Inheritance diagram for ProbeMatchParser:

Collaboration diagram for ProbeMatchParser:

Public Member Functions
	ProbeMatchParser (const char *probe_target, const char *headline)
	~ProbeMatchParser ()
const char *	get_error () const
bool	is_gene_result () const
int	get_probe_region_offset () const
bool	getColumnRange (const char *columnName, int *startCol, int *endCol) const

Friends
class	ParsedProbeMatch

Detailed Description

Definition at line 26 of file probe_match_parser.hxx.

Constructor & Destructor Documentation

ProbeMatchParser::ProbeMatchParser	(	const char *	probe_target,
		const char *	headline
	)

Definition at line 90 of file probe_match_parser.cxx.

References ARB_strdup(), ProbeMatch_impl::findColumn(), GBS_global_string_copy(), GBT_reverseComplementNucSequence(), ProbeMatch_impl::set_probe_region_offset(), and column::start_column.

ProbeMatchParser::~ProbeMatchParser

(

)

Definition at line 133 of file probe_match_parser.cxx.

Member Function Documentation

const char* ProbeMatchParser::get_error ( ) const

inline

Definition at line 34 of file probe_match_parser.hxx.

Referenced by probe_match_event(), and probe_match_with_specificity_event().

bool ProbeMatchParser::is_gene_result

(

)

const

Definition at line 148 of file probe_match_parser.cxx.

References ProbeMatch_impl::findColumn(), and pm_assert.

Referenced by probe_match_event().

int ProbeMatchParser::get_probe_region_offset

(

)

const

Definition at line 153 of file probe_match_parser.cxx.

References ProbeMatch_impl::get_probe_region_offset(), and pm_assert.

Referenced by probe_match_event().

bool ProbeMatchParser::getColumnRange	(	const char *	columnName,
		int *	startCol,
		int *	endCol
	)		const

Definition at line 138 of file probe_match_parser.cxx.

References column::end_column, ProbeMatch_impl::findColumn(), pm_assert, and column::start_column.

Referenced by ParsedProbeMatch::get_column_content(), and ParsedProbeMatch::get_position().

Friends And Related Function Documentation

friend class ParsedProbeMatch

friend

Definition at line 40 of file probe_match_parser.hxx.

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The documentation for this class was generated from the following files:

• PROBE_DESIGN/probe_match_parser.hxx
• PROBE_DESIGN/probe_match_parser.cxx