ARB
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#include <GEN_gene.hxx>
Public Member Functions | |
GEN_root (const char *organism_name_, const char *gene_name_, GBDATA *gb_main_, AW_root *aw_root, GEN_graphic *gen_graphic_) | |
~GEN_root () | |
const std::string & | GeneName () const |
const std::string & | OrganismName () const |
GBDATA * | GbMain () const |
void | set_GeneName (const std::string &gene_name_) |
void | paint (AW_device *device) |
void | reinit_NDS () const |
const AW::Rectangle & | get_selected_range () const |
Definition at line 84 of file GEN_gene.hxx.
GEN_root::GEN_root | ( | const char * | organism_name_, |
const char * | gene_name_, | ||
GBDATA * | gb_main_, | ||
AW_root * | aw_root, | ||
GEN_graphic * | gen_graphic_ | ||
) |
Definition at line 165 of file GEN_gene.cxx.
References ARB_HIDDEN, ARB_strdup(), aw_message(), AW_root::awar(), AWAR_GENMAP_SHOW_HIDDEN, GB_await_error(), GB_entry(), gb_main, GB_read_byte(), GB_read_count(), GBS_global_string(), GBS_global_string_copy(), GBT_find_sequence(), GBT_find_species(), GEN_find_gene_data(), GEN_first_gene_rel_gene_data(), GEN_global_gene_identifier(), GEN_next_gene(), GENOM_ALIGNMENT, length, loadPositions4gene(), NULp, GEN_position::parts, AW_awar::read_int(), ta, and warning().
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Definition at line 113 of file GEN_gene.hxx.
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Definition at line 115 of file GEN_gene.hxx.
Referenced by GEN_graphic::reinit_gen_root().
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Definition at line 116 of file GEN_gene.hxx.
Referenced by GEN_graphic::reinit_gen_root().
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Definition at line 118 of file GEN_gene.hxx.
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Definition at line 120 of file GEN_gene.hxx.
Referenced by GEN_graphic::reinit_gen_root().
void GEN_root::paint | ( | AW_device * | device | ) |
Definition at line 180 of file GEN_graphic.cxx.
References AW_root::awar(), AWAR_GENMAP_ARROW_SIZE, AWAR_GENMAP_BOOK_BASES_PER_LINE, AWAR_GENMAP_BOOK_LINE_HEIGHT, AWAR_GENMAP_BOOK_LINE_SPACE, AWAR_GENMAP_BOOK_WIDTH_FACTOR, AWAR_GENMAP_RADIAL_INSIDE, AWAR_GENMAP_RADIAL_OUTSIDE, AWAR_GENMAP_SHOW_ALL_NDS, AWAR_GENMAP_VERTICAL_FACTOR_X, AWAR_GENMAP_VERTICAL_FACTOR_Y, GEN_DISPLAY_STYLE_BOOK, GEN_DISPLAY_STYLE_RADIAL, GEN_DISPLAY_STYLE_VERTICAL, GEN_GC_DEFAULT, GEN_graphic::get_aw_root(), GEN_graphic::get_display_style(), getDrawGcs(), M_PI, PAINT_MAX, PAINT_MIN, AW_awar::read_float(), AW_awar::read_int(), AW_device::text(), xi, and y.
Referenced by GEN_graphic::show().
void GEN_root::reinit_NDS | ( | ) | const |
Definition at line 236 of file GEN_gene.cxx.
Referenced by reinit_NDS_4_window().
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Definition at line 126 of file GEN_gene.hxx.
Referenced by GEN_jump_cb().