SEC_db_interface Class Reference

#include <SEC_db.hxx>

Inheritance diagram for SEC_db_interface:

Collaboration diagram for SEC_db_interface:

Public Member Functions
	SEC_db_interface (SEC_graphic *Gfx, AWT_canvas *Scr, ED4_plugin_host &host_)
	~SEC_db_interface ()
void	update_shown_positions ()
bool	canDisplay () const
size_t	length () const
bool	shallDisplayPosition (size_t abspos) const
char	baseAt (size_t abspos) const
AW_root *	awroot () const
GBDATA *	gbmain () const
SEC_graphic *	graphic () const
SEC_root *	secroot () const
AWT_canvas *	canvas () const
BI_helix *	helix () const
const AW_helix *	edit4_helix () const
BI_ecoli_ref *	ecoli () const
SEC_bond_def *	bonds () const
SEC_structure_toggler *	structure () const
const ED4_plugin_host &	host () const
void	init_toggler () const

Detailed Description

Definition at line 86 of file SEC_db.hxx.

Constructor & Destructor Documentation

SEC_db_interface::SEC_db_interface	(	SEC_graphic *	Gfx,
		AWT_canvas *	Scr,
		ED4_plugin_host &	host_
	)

Definition at line 334 of file SEC_db.cxx.

References AW_helix::add_callback(), AW_awar::add_callback(), AW_ROOT_DEFAULT, AWAR_CURSOR_POSITION, AWAR_SPECIES_NAME, AW_root::awar_string(), bind_transldef_awars(), SEC_dbcb::call(), create_awars(), GB_add_callback(), GB_CB_CHANGED, GB_FIND, GB_search(), GBT_get_alignment(), GBT_get_alignment_len(), GBT_get_default_alignment(), ED4_plugin_host::get_helix(), NULp, sec_assert, sec_dbcb(), and ta.

SEC_db_interface::~SEC_db_interface

(

)

Definition at line 408 of file SEC_db.cxx.

References NULp.

Member Function Documentation

void SEC_db_interface::update_shown_positions

(

)

Definition at line 440 of file SEC_db.cxx.

References baseAt(), SEC_seq_data::data(), BI_helix::is_pairpos(), BI_helix::opposite_position(), sec_assert, and SEC_is_gap().

Referenced by SEC_root::update_shown_positions().

bool SEC_db_interface::canDisplay ( ) const

inline

Definition at line 140 of file SEC_db.hxx.

Referenced by SEC_root::canDisplay(), and SEC_region::read().

size_t SEC_db_interface::length ( ) const

inline

Definition at line 141 of file SEC_db.hxx.

Referenced by baseAt(), SEC_root::max_index(), and shallDisplayPosition().

bool SEC_db_interface::shallDisplayPosition ( size_t  abspos ) const

inline

Definition at line 143 of file SEC_db.hxx.

References length(), and sec_assert.

Referenced by SEC_root::shallDisplayPosition().

char SEC_db_interface::baseAt ( size_t  abspos ) const

inline

Definition at line 147 of file SEC_db.hxx.

References SEC_seq_data::data(), length(), and sec_assert.

Referenced by update_shown_positions().

AW_root* SEC_db_interface::awroot ( ) const

inline

Definition at line 152 of file SEC_db.hxx.

Referenced by bind_transldef_awars(), export_structure_to_file(), and import_structure_from_file().

GBDATA* SEC_db_interface::gbmain ( ) const

inline

Definition at line 153 of file SEC_db.hxx.

Referenced by SEC_undo_cb().

SEC_graphic* SEC_db_interface::graphic ( ) const

inline

Definition at line 154 of file SEC_db.hxx.

Referenced by import_structure_from_file(), and SEC_new_structure().

SEC_root * SEC_db_interface::secroot

(

)

const

Definition at line 436 of file SEC_db.cxx.

Referenced by export_structure_to_file(), import_structure_from_file(), and SEC_new_structure().

AWT_canvas* SEC_db_interface::canvas ( ) const

inline

Definition at line 156 of file SEC_db.hxx.

Referenced by import_structure_from_file(), SEC_root::perform_autoscroll(), SEC_root::position_cursor(), SEC_delete_structure(), SEC_fit_window_cb(), sec_mode_event(), SEC_new_structure(), SEC_rename_structure(), SEC_toggle_cb(), SEC_undo_cb(), and transl_def_changed_cb().

BI_helix* SEC_db_interface::helix ( ) const

inline

Definition at line 158 of file SEC_db.hxx.

Referenced by SEC_root::get_helixDef().

const AW_helix* SEC_db_interface::edit4_helix ( ) const

inline

Definition at line 159 of file SEC_db.hxx.

References ED4_plugin_host::get_helix().

BI_ecoli_ref* SEC_db_interface::ecoli ( ) const

inline

Definition at line 161 of file SEC_db.hxx.

Referenced by SEC_root::paint().

SEC_bond_def* SEC_db_interface::bonds ( ) const

inline

Definition at line 162 of file SEC_db.hxx.

Referenced by transl_def_changed_cb().

SEC_structure_toggler* SEC_db_interface::structure ( ) const

inline

Definition at line 163 of file SEC_db.hxx.

Referenced by SEC_root::paint(), SEC_delete_structure(), SEC_new_structure(), SEC_rename_structure(), and SEC_toggle_cb().

const ED4_plugin_host& SEC_db_interface::host ( ) const

inline

Definition at line 164 of file SEC_db.hxx.

Referenced by SEC_root::host().

void SEC_db_interface::init_toggler

(

)

const

Definition at line 475 of file SEC_db.cxx.

Referenced by SEC_new_structure().

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The documentation for this class was generated from the following files:

• SECEDIT/SEC_db.hxx
• SECEDIT/SEC_db.cxx