AliView Class Reference

#include <AliView.hxx>

Public Member Functions
	AliView (GBDATA *gb_main_)
	AliView (GBDATA *gb_main_, const AP_filter &filter_, const AP_weights &weights_, const char *aliname_)
	AliView (const AliView &other)
	~AliView ()
	DECLARE_ASSIGNMENT_OPERATOR (AliView)
const char *	get_aliname () const
const AP_filter *	get_filter () const
AP_filter *	get_filter ()
const AP_weights *	get_weights () const
GBDATA *	get_gb_main () const
size_t	get_length () const
bool	has_data () const

Detailed Description

Definition at line 25 of file AliView.hxx.

Constructor & Destructor Documentation

AliView::AliView ( GBDATA *  gb_main_ )

explicit

Definition at line 33 of file AliView.cxx.

AliView::AliView	(	GBDATA *	gb_main_,
		const AP_filter &	filter_,
		const AP_weights &	weights_,
		const char *	aliname_
	)

Definition at line 42 of file AliView.cxx.

AliView::AliView

(

const AliView &

other

)

Definition at line 51 of file AliView.cxx.

AliView::~AliView

(

)

Definition at line 60 of file AliView.cxx.

Member Function Documentation

AliView::DECLARE_ASSIGNMENT_OPERATOR

(

AliView

)

const char* AliView::get_aliname ( ) const

inline

Definition at line 40 of file AliView.hxx.

Referenced by AP_sequence::bind_to_species(), ArbParsimony::generate_tree(), and DI_MATRIX::get_aliname().

const AP_filter* AliView::get_filter ( ) const

inline

Definition at line 42 of file AliView.hxx.

Referenced by di_calculate_matrix(), ARB_seqtree_root::get_filter(), and AP_sequence::get_filter().

AP_filter* AliView::get_filter ( )

inline

Definition at line 43 of file AliView.hxx.

const AP_weights* AliView::get_weights ( ) const

inline

Definition at line 45 of file AliView.hxx.

Referenced by ARB_seqtree_root::get_weights(), and AP_sequence::get_weights().

GBDATA* AliView::get_gb_main ( ) const

inline

Definition at line 46 of file AliView.hxx.

Referenced by AP_sequence::bind_to_species(), ArbParsimony::generate_tree(), and ARB_seqtree_root::get_gb_main().

size_t AliView::get_length

(

)

const

Definition at line 66 of file AliView.cxx.

References AP_filter::get_filtered_length().

Referenced by DI_MATRIX::calculate(), DI_MATRIX::calculate_pro(), DI_MATRIX::detect_transformation(), and AP_sequence::get_sequence_length().

bool AliView::has_data ( ) const

inline

Definition at line 50 of file AliView.hxx.

Referenced by ARB_seqtree_root::ARB_seqtree_root(), FINAL_TYPE< SEQTYPE >::init(), ARB_seqtree_root::linkToDB(), and ARB_seqtree_root::unlinkFromDB().

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The documentation for this class was generated from the following files:

• SL/ALIVIEW/AliView.hxx
• SL/ALIVIEW/AliView.cxx