ARB
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#include <SQ_GroupData.h>
Public Member Functions | |
SQ_GroupData_RNA () | |
SQ_GroupData_RNA * | clone () const OVERRIDE |
SQ_GroupData_RNA & | operator= (const SQ_GroupData &other) OVERRIDE |
consensus_result | SQ_calc_consensus (const char *sequence) const OVERRIDE |
void | SQ_add_sequence (const char *sequence) OVERRIDE |
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SQ_GroupData_Impl () | |
SQ_GroupData_Impl & | operator= (const SQ_GroupData &Other) OVERRIDE |
~SQ_GroupData_Impl () OVERRIDE | |
void | SQ_init_consensus (int size) FINAL_OVERRIDE |
int | SQ_print_on_screen () OVERRIDE |
void | SQ_add (const SQ_GroupData &other) OVERRIDE |
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SQ_GroupData () | |
virtual | ~SQ_GroupData () |
void | SQ_set_avg_bases (int bases) |
int | SQ_get_avg_bases () const |
void | SQ_set_avg_gc (double gc) |
double | SQ_get_avg_gc () const |
void | SQ_count_sequences () |
int | SQ_get_nr_sequences () const |
bool | SQ_is_initialized () const |
int | getSize () const |
Static Protected Attributes | |
static int | class_counter |
Additional Inherited Members | |
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Int< I > * | consensus |
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int | size |
int | avg_bases |
int | nr_sequences |
double | gc_prop |
bool | initialized |
Definition at line 150 of file SQ_GroupData.h.
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inline |
Definition at line 154 of file SQ_GroupData.h.
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inlinevirtual |
Implements SQ_GroupData.
Definition at line 157 of file SQ_GroupData.h.
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inlinevirtual |
Implements SQ_GroupData.
Definition at line 160 of file SQ_GroupData.h.
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virtual |
Implements SQ_GroupData.
Definition at line 33 of file SQ_GroupData.cxx.
References consensus_result::conformity, consensus_result::deviation, and seq_assert.
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virtual |
Implements SQ_GroupData.
Definition at line 160 of file SQ_GroupData.cxx.
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staticprotected |
Definition at line 168 of file SQ_GroupData.h.