ARB
|
#include <GDE_def.h>
Public Member Functions | |
NA_Alignment (GBDATA *gb_main_) | |
~NA_Alignment () | |
Public Member Functions inherited from Noncopyable | |
Noncopyable () | |
Public Attributes | |
char * | id |
char * | description |
char * | authority |
size_t | numelements |
int | maxnumelements |
int | maxlen |
int | rel_offset |
NA_Sequence * | element |
size_t | numgroups |
NA_Sequence ** | group |
int | format |
GBDATA * | gb_main |
char * | alignment_name |
GB_alignment_type | alignment_type |
NA_Alignment::NA_Alignment | ( | GBDATA * | gb_main_ | ) |
Definition at line 203 of file GDE_event.cxx.
References alignment_name, alignment_type, gb_main, GBT_get_alignment_type(), GBT_get_default_alignment(), and ta.
NA_Alignment::~NA_Alignment | ( | ) |
Definition at line 222 of file GDE_event.cxx.
References alignment_name, authority, description, element, GDE_freesequ(), and numelements.
char* NA_Alignment::description |
Definition at line 118 of file GDE_def.h.
Referenced by ~NA_Alignment().
char* NA_Alignment::authority |
Definition at line 119 of file GDE_def.h.
Referenced by ~NA_Alignment().
size_t NA_Alignment::numelements |
Definition at line 120 of file GDE_def.h.
Referenced by Arbdb_get_curelem(), export_to_DB(), GDE_startaction_cb(), InsertDatainGDE(), NormalizeOffset(), ReadGen(), ReadNA_Flat(), Regroup(), WriteGDE(), WriteGen(), WriteNA_Flat(), and ~NA_Alignment().
int NA_Alignment::maxnumelements |
Definition at line 121 of file GDE_def.h.
Referenced by Arbdb_get_curelem().
int NA_Alignment::maxlen |
Definition at line 122 of file GDE_def.h.
Referenced by InsertDatainGDE(), NormalizeOffset(), ReadGen(), and ReadNA_Flat().
int NA_Alignment::rel_offset |
Definition at line 123 of file GDE_def.h.
Referenced by NormalizeOffset(), WriteGDE(), and WriteNA_Flat().
NA_Sequence* NA_Alignment::element |
Definition at line 124 of file GDE_def.h.
Referenced by Arbdb_get_curelem(), export_to_DB(), InsertDatainGDE(), NormalizeOffset(), ReadGen(), ReadNA_Flat(), Regroup(), WriteGDE(), WriteGen(), WriteNA_Flat(), and ~NA_Alignment().
NA_Sequence** NA_Alignment::group |
int NA_Alignment::format |
Definition at line 127 of file GDE_def.h.
Referenced by LoadFile().
GBDATA* NA_Alignment::gb_main |
Definition at line 129 of file GDE_def.h.
Referenced by GDE_startaction_cb(), InsertDatainGDE(), NA_Alignment(), and ReadArbdb().
char* NA_Alignment::alignment_name |
Definition at line 130 of file GDE_def.h.
Referenced by export_to_DB(), InsertDatainGDE(), NA_Alignment(), ReadArbdb(), and ~NA_Alignment().
GB_alignment_type NA_Alignment::alignment_type |
Definition at line 131 of file GDE_def.h.
Referenced by export_to_DB(), and NA_Alignment().