ARB
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Public Member Functions | |
SearchTreeNode (GB_CSTR pattern, GB_CSTR comment) | |
~SearchTreeNode () | |
SearchTreeNode * | insert_unified_pattern (GB_CSTR pattern, GB_CSTR pattern_comment) |
void | findMatches (int off, GB_CSTR seq, int len, int mismatches, int mismatch_list[MAX_MISMATCHES]) |
Static Public Member Functions | |
static void | set_start_offset (int off) |
static void | set_report (reportMatch r, int *u2r) |
static void | set_mismatches (int minMis, int maxMis) |
Definition at line 125 of file ED4_search.cxx.
Definition at line 167 of file ED4_search.cxx.
References e4_assert, and NULp.
Referenced by insert_unified_pattern().
SearchTreeNode::~SearchTreeNode | ( | ) |
Definition at line 189 of file ED4_search.cxx.
SearchTreeNode * SearchTreeNode::insert_unified_pattern | ( | GB_CSTR | pattern, |
GB_CSTR | pattern_comment | ||
) |
Definition at line 196 of file ED4_search.cxx.
References e4_assert, insert_unified_pattern(), and SearchTreeNode().
Referenced by insert_unified_pattern().
void SearchTreeNode::findMatches | ( | int | off, |
GB_CSTR | seq, | ||
int | len, | ||
int | mismatches, | ||
int | mismatch_list[MAX_MISMATCHES] | ||
) |
Definition at line 237 of file ED4_search.cxx.
References e4_assert, ED4_is_gap_character(), and findMatches().
Referenced by findMatches(), and SearchTree::findMatches().
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inlinestatic |
Definition at line 148 of file ED4_search.cxx.
Referenced by SearchTree::findMatches().
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inlinestatic |
Definition at line 149 of file ED4_search.cxx.
Referenced by SearchTree::findMatches().
Definition at line 150 of file ED4_search.cxx.
References e4_assert.
Referenced by SearchTree::findMatches().