SearchTreeNode Class Reference

Inheritance diagram for SearchTreeNode:

Collaboration diagram for SearchTreeNode:

Public Member Functions
	SearchTreeNode (GB_CSTR pattern, GB_CSTR comment)
	~SearchTreeNode ()
SearchTreeNode *	insert_unified_pattern (GB_CSTR pattern, GB_CSTR pattern_comment)
void	findMatches (int off, GB_CSTR seq, int len, int mismatches, int mismatch_list[MAX_MISMATCHES])

Static Public Member Functions
static void	set_start_offset (int off)
static void	set_report (reportMatch r, int *u2r)
static void	set_mismatches (int minMis, int maxMis)

Detailed Description

Definition at line 125 of file ED4_search.cxx.

Constructor & Destructor Documentation

SearchTreeNode::SearchTreeNode	(	GB_CSTR	pattern,
		GB_CSTR	comment
	)

Definition at line 167 of file ED4_search.cxx.

References e4_assert, and NULp.

Referenced by insert_unified_pattern().

SearchTreeNode::~SearchTreeNode

(

)

Definition at line 189 of file ED4_search.cxx.

Member Function Documentation

SearchTreeNode * SearchTreeNode::insert_unified_pattern	(	GB_CSTR	pattern,
		GB_CSTR	pattern_comment
	)

Definition at line 196 of file ED4_search.cxx.

References e4_assert, insert_unified_pattern(), and SearchTreeNode().

Referenced by insert_unified_pattern().

void SearchTreeNode::findMatches	(	int	off,
		GB_CSTR	seq,
		int	len,
		int	mismatches,
		int	mismatch_list[MAX_MISMATCHES]
	)

Definition at line 237 of file ED4_search.cxx.

References e4_assert, ED4_is_gap_character(), and findMatches().

Referenced by findMatches(), and SearchTree::findMatches().

static void SearchTreeNode::set_start_offset ( int  off )

inlinestatic

Definition at line 148 of file ED4_search.cxx.

Referenced by SearchTree::findMatches().

static void SearchTreeNode::set_report ( reportMatch  r, int *  u2r  )

inlinestatic

Definition at line 149 of file ED4_search.cxx.

Referenced by SearchTree::findMatches().

static void SearchTreeNode::set_mismatches ( int  minMis, int  maxMis  )

inlinestatic

Definition at line 150 of file ED4_search.cxx.

References e4_assert.

Referenced by SearchTree::findMatches().

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The documentation for this class was generated from the following file:

• EDIT4/ED4_search.cxx