ARB
|
#include <pars_awars.h>
Public Member Functions | |
KL_Settings (AW_root *aw_root) | |
Public Attributes | |
int | maxdepth |
int | incdepth |
struct { | |
bool enabled | |
int depth [CUSTOM_DEPTHS] | |
} | Static |
struct { | |
bool enabled | |
KL_DYNAMIC_THRESHOLD_TYPE type | |
int start | |
int maxx | |
int maxy | |
} | Dynamic |
EdgeSpec | whichEdges |
Definition at line 66 of file pars_awars.h.
KL_Settings::KL_Settings | ( | AW_root * | aw_root | ) |
Definition at line 1865 of file PARS_main.cxx.
References ANY_EDGE, AW_root::awar(), AWAR_KL_DYNAMIC_ENABLED, AWAR_KL_DYNAMIC_MAXX, AWAR_KL_DYNAMIC_MAXY, AWAR_KL_DYNAMIC_START, AWAR_KL_FUNCTION_TYPE, AWAR_KL_INCDEPTH, AWAR_KL_MAXDEPTH, AWAR_KL_STATIC_DEPTH1, AWAR_KL_STATIC_DEPTH2, AWAR_KL_STATIC_DEPTH3, AWAR_KL_STATIC_DEPTH4, AWAR_KL_STATIC_DEPTH5, AWAR_KL_STATIC_ENABLED, AWAR_OPTI_MARKED_ONLY, AWAR_OPTI_SKIP_FOLDED, AW_awar::read_int(), SKIP_FOLDED_EDGES, and SKIP_UNMARKED_EDGES.
int KL_Settings::maxdepth |
Definition at line 67 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree().
int KL_Settings::incdepth |
Definition at line 68 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree().
bool KL_Settings::enabled |
Definition at line 71 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree().
int KL_Settings::depth[CUSTOM_DEPTHS] |
Definition at line 72 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree().
struct { ... } KL_Settings::Static |
Referenced by ArbParsimony::kernighan_optimize_tree().
KL_DYNAMIC_THRESHOLD_TYPE KL_Settings::type |
Definition at line 76 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree().
int KL_Settings::start |
Definition at line 77 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree().
int KL_Settings::maxx |
Definition at line 78 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree().
int KL_Settings::maxy |
Definition at line 79 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree().
struct { ... } KL_Settings::Dynamic |
Referenced by ArbParsimony::kernighan_optimize_tree().
EdgeSpec KL_Settings::whichEdges |
Definition at line 82 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree(), NT_recursiveNNI(), ArbParsimony::optimize_tree(), and randomMixTree().