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ARB
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#include <pars_awars.h>

Public Member Functions | |
| KL_Settings (AW_root *aw_root) | |
Public Attributes | |
| int | maxdepth |
| int | incdepth |
| struct { | |
| bool enabled | |
| int depth [CUSTOM_DEPTHS] | |
| } | Static |
| struct { | |
| bool enabled | |
| KL_DYNAMIC_THRESHOLD_TYPE type | |
| int start | |
| int maxx | |
| int maxy | |
| } | Dynamic |
| EdgeSpec | whichEdges |
Definition at line 66 of file pars_awars.h.
| KL_Settings::KL_Settings | ( | AW_root * | aw_root | ) |
Definition at line 1865 of file PARS_main.cxx.
References ANY_EDGE, AW_root::awar(), AWAR_KL_DYNAMIC_ENABLED, AWAR_KL_DYNAMIC_MAXX, AWAR_KL_DYNAMIC_MAXY, AWAR_KL_DYNAMIC_START, AWAR_KL_FUNCTION_TYPE, AWAR_KL_INCDEPTH, AWAR_KL_MAXDEPTH, AWAR_KL_STATIC_DEPTH1, AWAR_KL_STATIC_DEPTH2, AWAR_KL_STATIC_DEPTH3, AWAR_KL_STATIC_DEPTH4, AWAR_KL_STATIC_DEPTH5, AWAR_KL_STATIC_ENABLED, AWAR_OPTI_MARKED_ONLY, AWAR_OPTI_SKIP_FOLDED, AW_awar::read_int(), SKIP_FOLDED_EDGES, and SKIP_UNMARKED_EDGES.
| int KL_Settings::maxdepth |
Definition at line 67 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree().
| int KL_Settings::incdepth |
Definition at line 68 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree().
| bool KL_Settings::enabled |
Definition at line 71 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree().
| int KL_Settings::depth[CUSTOM_DEPTHS] |
Definition at line 72 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree().
| struct { ... } KL_Settings::Static |
Referenced by ArbParsimony::kernighan_optimize_tree().
| KL_DYNAMIC_THRESHOLD_TYPE KL_Settings::type |
Definition at line 76 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree().
| int KL_Settings::start |
Definition at line 77 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree().
| int KL_Settings::maxx |
Definition at line 78 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree().
| int KL_Settings::maxy |
Definition at line 79 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree().
| struct { ... } KL_Settings::Dynamic |
Referenced by ArbParsimony::kernighan_optimize_tree().
| EdgeSpec KL_Settings::whichEdges |
Definition at line 82 of file pars_awars.h.
Referenced by ArbParsimony::kernighan_optimize_tree(), NT_recursiveNNI(), ArbParsimony::optimize_tree(), and randomMixTree().
1.8.8