ConsensusReference Class Reference

Inheritance diagram for ConsensusReference:

Collaboration diagram for ConsensusReference:

Public Member Functions
	ConsensusReference (GB_CSTR alignment_, Aligner_get_consensus_func get_consensus_, int max_seq_length_, const AlignParams &ali_params_)
ARB_ERROR	align_to (GBDATA *gb_toalign) const OVERRIDE
Public Member Functions inherited from AlignmentReference
	AlignmentReference (GB_CSTR alignment_, int max_seq_length_, const AlignParams &ali_params_)
virtual	~AlignmentReference ()
GB_CSTR	get_alignment () const
int	get_max_seq_length () const
const AlignParams &	get_ali_params () const

Detailed Description

Definition at line 1777 of file fast_aligner.cxx.

Constructor & Destructor Documentation

ConsensusReference::ConsensusReference ( GB_CSTR  alignment_, Aligner_get_consensus_func  get_consensus_, int  max_seq_length_, const AlignParams &  ali_params_  )

inline

Definition at line 1781 of file fast_aligner.cxx.

Member Function Documentation

ARB_ERROR ConsensusReference::align_to ( GBDATA *  gb_toalign ) const

inlinevirtual

Implements AlignmentReference.

Definition at line 1789 of file fast_aligner.cxx.

References alignToGroupConsensus(), AlignmentReference::get_ali_params(), AlignmentReference::get_alignment(), and AlignmentReference::get_max_seq_length().

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The documentation for this class was generated from the following file:

• SL/FAST_ALIGNER/fast_aligner.cxx