Here is a list of all class members with links to the classes they belong to:

- g -

• g() : AW_rgb16 , AW_rgb_diff , AW_rgb_normalized , BaseCounts
• G : FINAL_TYPE< SEQTYPE >
• g : Multitype , xarray
• gain : PS_Candidate
• gap : IRS_data , Paup
• gap_percent() : ALI_PROFILE
• gapbound : ConsensusBuildParams
• gapchar : prettyopts
• gaps() : FastAlignInsertion
• gapsBefore() : CompactedSequence , CompactedSubSequence
• gb_cache() : gb_cache
• gb_callback() : gb_callback
• gb_data : Data , ED4_work_info
• GB_DbScanner() : GB_DbScanner
• gb_gene_data : gene_container_changed_cb_data
• gb_hierarchy_callback() : gb_hierarchy_callback
• gb_hierarchy_location() : gb_hierarchy_location
• GB_initial_transaction() : GB_initial_transaction
• gb_key : gb_Key
• gb_key_data : GB_MAIN_TYPE
• gb_key_disabled : gb_Key
• gb_local_data() : gb_local_data
• gb_main : adfiltercbstruct , ALI_ARBDB , ALI_PT_CONTEXT , AlignDataAccess , arb_prm_struct , AWT_canvas , db_interrupt_data , Dict , GB_MAIN_TYPE , gb_server_data , gde_database_access , GEN_create_map_param , GEN_unique_param , MutableBoundItemSel , NA_Alignment , NT_global , probe_struct_global , ProbeMatchEventParam , QUERY::DbQuery , QUERY::query_spec , RNA3D_Graphics , SAI_graphic , selectValidNameStruct , st_check_cb_data , Structure3D
• gb_main_lastImport : ImportTestData
• GB_MAIN_TYPE() : GB_MAIN_TYPE
• gb_mas : MasterSequence
• gb_master_ali : gb_Key
• gb_node : NodeState , TreeNode
• gb_origin : AW_awar
• gb_overlap_group : FoundGroup
• GB_previousSecurityLevel() : GB_previousSecurityLevel
• gb_quick_save() : gb_quick_save
• gb_ref : QUERY::DbQuery , QUERY::query_spec
• GB_securityLevel() : GB_securityLevel
• gb_seq : Sequence
• GB_shell() : GB_shell
• gb_shell : probe_struct_global
• GB_shell4perl() : GB_shell4perl
• gb_species : NA_Sequence
• gb_species_data : EG2PS_data , ImportSession
• gb_struct : FINAL_TYPE< SEQTYPE >
• gb_struct_ref : FINAL_TYPE< SEQTYPE >
• GB_topSecurityLevel() : GB_topSecurityLevel
• GB_transaction() : GB_transaction
• gb_tree_gone : AP_tree_root
• gb_triggered_callback() : gb_triggered_callback
• gb_var : AW_awar
• gbd : g_b_undo_gbd , gb_triggered_callback , gbcms_delete_list , gbdata_offset , TreeOrderedSpecies
• gbdoff : gbdByKey
• gbds : O_gbdByKey
• gbe : gb_cache_entry
• GBENTRY_memory() : GBENTRY_memory
• GbGene() : GEN_gene
• gbkentry : SeqInfo
• GBL_call_env() : GBL_call_env
• GBL_command_arguments() : GBL_command_arguments
• GBL_command_lookup_table() : GBL_command_lookup_table
• GBL_custom_command_lookup_table() : GBL_custom_command_lookup_table
• GBL_env() : GBL_env
• GBL_maybe_itemless_call_env() : GBL_maybe_itemless_call_env
• GBL_simple_call_env() : GBL_simple_call_env
• gbm_index : g_b_undo_entry , gb_flag_types2
• GbMain() : GEN_root
• gbmain() : PARSIMONY_testenv< SEQTYPE > , SEC_db_interface
• GBS_strstruct() : GBS_strstruct
• GBT_config() : GBT_config
• GBT_config_item() : GBT_config_item
• GBT_config_parser() : GBT_config_parser
• gc : AP_tree_members , AW_xfig_line , AW_xfig_text , gc_desc , SQ_weights
• GC_content : PS_Probe
• gc_desc() : gc_desc
• gc_in_wanted_range() : ProbeIterator
• gc_manager : AWT_canvas , ED4_root
• gc_mapable() : AW_common , AW_GC_set
• gc_prop : SQ_GroupData
• gc_range() : gc_range
• GC_ratio : Item
• GcgCommentWriter() : GcgCommentWriter
• GcgWriter() : GcgWriter
• gde_iteminfo() : gde_iteminfo
• gds : gbm_pool
• gen_color_hash() : Sondentopf
• GEN_create_map_param() : GEN_create_map_param
• gen_description() : arb_test::FINAL_TYPE< T >
• gen_determ_combis() : Generation
• GEN_gene() : GEN_gene
• GEN_graphic() : GEN_graphic
• gen_Hitliste() : Sonde
• gen_id() : Bitvector
• GEN_item_type_species_selector() : GEN_item_type_species_selector
• GEN_map_manager() : GEN_map_manager
• GEN_map_window() : GEN_map_window
• gen_Mergefeld() : Sondentopf
• GEN_root() : GEN_root
• GenBank() : FINAL_TYPE< SEQTYPE >
• GenbankParser() : GenbankParser
• GenbankReader() : GenbankReader
• GenbankRef() : GenbankRef
• gene_container_changed_cb_data() : gene_container_changed_cb_data
• gene_or_full_width : format_props
• gene_struct() : gene_struct
• GenebankImporter() : GenebankImporter
• GeneName() : GEN_root
• GenePositionMap() : GenePositionMap
• general_item_change() : awt_linked_to_item , FINAL_TYPE< SEQTYPE >
• generate() : DesignTargets
• generate_all_xsubs() : xsubGenerator
• generate_configuration_string() : ED4_base
• generate_for_sequence() : ProbeCandidates
• generate_group_name() : GroupBuilder
• generate_item_id : MutableItemSelector
• generate_string() : LikelihoodRanges
• generate_tree() : ArbParsimony
• generate_window() : ED4_root
• generate_x_string() : SEC_region , SEC_root
• GenerateBaseDifferenceDisplayList() : Structure3D
• GenerateBaseDifferencePositionDisplayList() : Structure3D
• GenerateCursorPositionDispList() : Structure3D
• GenerateDisplayLists() : Structure3D
• GenerateHelixDispLists() : Structure3D
• GenerateHelixNrDispList() : Structure3D
• GenerateInsertionDisplayList() : Structure3D
• GenerateMoleculeSkeleton() : Structure3D
• GenerateSecStructureHelixRegions() : Structure3D
• GenerateSecStructureNonHelixRegions() : Structure3D
• GenerateSecStructureUnpairedHelixRegions() : Structure3D
• GenerateTertiaryInteractionsDispLists() : Structure3D
• Generation() : Generation
• GenerationDuplicates() : GenerationDuplicates
• generic_box() : AW_device
• generic_circle() : AW_device
• generic_invisible() : AW_device
• generic_polygon() : AW_device
• genome_length : PositionPair
• get() : AISC_Object , ALI_PATHMAP , ALI_TARRAY< T > , ALI_TSTACK< T > , Alignment , AP_matrix , ArgParser , AW_awar , BufferPtr< T > , Complement , ConsensusTreeBuilder , DefinedCommands , DI_GLOBAL_MATRIX
• Get() : ED4_species_pointer
• get() : FieldTransfer::RuleSet
• Get() : FINAL_TYPE< SEQTYPE >
• get() : FINAL_TYPE< SEQTYPE > , GBL_streams , GEN_command_mode_param , GEN_extract_mode_param , GEN_unique_param , Memory , MetaTagTranslator , MismatchWeights , PS_BitMap
• Get() : PS_BitSet
• get() : PS_FileBuffer , Reference , SetVariables , SortedFreq , symmetric_matrix< T >
• GET_aaStartPos() : ED4_orf_terminal
• GET_aaStrandType() : ED4_orf_terminal
• get_abs_angle() : SEC_oriented
• get_abs_len() : ED4_base_position
• get_abs_pos() : AbsLoc
• get_abs_x() : ED4_cursor
• get_abspos() : probe_input_data
• get_acc() : probe_input_data
• get_aci() : SaiAciApplicator
• get_ACI_item() : QueryTarget , TargetGroup , TargetItem
• get_added_count() : DesignTargets
• get_adfiltercbstruct() : WeightedFilter
• get_adjusted_gauge() : ArbProgress::weightable
• get_aid() : FoundGroup
• get_ali() : StaticData
• get_ali_params() : AlignmentReference
• get_alignment() : AlignmentReference
• get_alignment_length() : ST_ML
• get_alignment_name() : ED4_root
• get_aliname() : AliView , AP_main , CLI , DI_MATRIX , FilteredExport
• get_aliview() : AP_sequence , ARB_seqtree_root , DI_MATRIX
• get_all_species() : MO_Liste
• get_allowed_descendants() : ED4_objspec
• get_Allowed_Mismatch_no() : Sonde
• get_allowed_size() : PT_compressed , SizeAwarable
• get_allSpecies() : SpeciesSpace
• get_alpha() : FINAL_TYPE< SEQTYPE >
• get_ambig() : Mismatches
• get_angle() : AP_tree
• get_answer() : FINAL_TYPE< SEQTYPE >
• get_any_item() : MutableBoundItemSel
• get_any_open_db() : gb_local_data
• get_apos_width() : PD_formatter
• get_application_id() : BoundActionTracker
• get_application_root() : ED4_host , ED4_plugin_host
• get_arb_gene_name() : gene_struct
• get_arb_species_name() : gene_struct
• get_area() : AW_area_management
• get_area_level() : ED4_base
• get_area_rectangle() : ED4_root
• get_area_size() : AW_device
• get_arg() : NtreeCommandLine
• get_ascent() : AW_font_group
• get_ascent_of_char() : AW_GC
• get_at_position() : AW_window
• get_at_xposition() : AW_window
• get_at_yposition() : AW_window
• get_attach_point() : AW_clicked_box , AW_clicked_element , AW_clicked_line , AW_clicked_text , FINAL_TYPE< SEQTYPE >
• get_autoJump() : SearchSettings
• get_available_fontsizes() : AW_GC , AW_GC_Xm , AW_stylable
• get_average_ingroup_distance() : FINAL_TYPE< SEQTYPE > , TargetGroup
• get_avg_fit() : Generation
• get_aw_root() : ClustersData , GEN_graphic , MP_Main , WeightedFilter
• get_awar() : ConfigDefinition , VarUpdateInfo
• get_awar_enable_helix() : ColumnStat
• get_awar_name() : AW_selection_list , ConfigDefinition , SelectionListSpec
• get_awar_smooth() : ColumnStat
• get_awar_tree() : TREE_canvas
• get_awar_type() : AW_selection_list
• get_awar_value() : AW_selection_list , ConfigDefinition
• get_awarname() : FieldSelDef
• get_bad_cluster() : GroupBuilder
• get_bakt_info_by_index() : MO_Liste
• get_baktid() : Hit
• get_base_count() : ED4_base_position , SEC_region
• get_base_frequency_at() : ST_ML
• get_base_length() : FINAL_TYPE< SEQTYPE >
• get_base_name() : AW_gc_manager
• get_base_position() : ED4_base_position , ED4_cursor , ED4_host , ED4_plugin_host
• get_basechars() : CLI
• get_best_match() : PartialSequence
• get_bitkennung() : Sonde
• get_bits() : PartitionSize
• get_block() : MemBlockManager
• get_bondThickWorld() : SEC_root
• get_bound_species_data() : AP_sequence , MostLikelySeq
• get_bounding_box() : AW_clicked_box , AW_clicked_element , AW_clicked_line , AW_clicked_text , ED4_CursorShape , FINAL_TYPE< SEQTYPE >
• get_box() : FlagLayout
• get_branchlength() : PartialSequence , TreeNode
• get_branchlength_unrooted() : TreeNode
• get_brother() : TreeNode
• get_buffer_size() : GBS_strstruct
• get_button_awarname() : RegFieldSelection
• get_button_length() : AW_window
• get_cached_sonde() : ST_Container
• get_callbacks() : GBDATA
• get_callEnv() : GBL_command_arguments
• get_canvas() : CanvasRef , GEN_map_window , MP_Main , TREE_canvas_registry
• get_case_sensitive() : SearchSettings
• get_cb() : StrictlyTypedCallback< RT, P1, P2, P3 >
• get_cd1() : AW_cb , AW_click_cd
• get_cd2() : AW_cb , AW_click_cd
• get_center() : FINAL_TYPE< SEQTYPE >
• get_center_char_vector() : SEC_root
• get_char() : PS_FileBuffer
• get_char_bind() : BI_pairdef
• get_char_radius() : SEC_root
• get_chars() : SaiBoolRule
• get_checksum() : probe_input_data
• get_child_path() : awt_input_handler
• get_circumference() : FINAL_TYPE< SEQTYPE >
• get_clade() : Candidate , TargetGroup
• get_clade_level() : GroupIterator
• get_click_cd() : AW_device
• get_click_device() : AW_area_management , AW_window
• get_click_time() : AW_area_management
• get_cliprect() : AW_clipable
• get_clone() : FieldTransfer::ItemClonedByRuleSet
• get_cluster_count() : FINAL_TYPE< SEQTYPE >
• get_cluster_id() : FoundGroup
• get_clusterIDs() : ClustersData
• get_cmdName() : GBL_command_arguments
• get_code() : arb_test::asserter , Convaln_exception
• get_colblock_range() : ED4_block
• get_color() : AW_common , gc_range
• get_color_hash() : Sondentopf
• get_color_index() : gc_desc
• get_color_string() : ST_ML
• get_column() : ListDisplayRow
• get_column_content() : ParsedProbeMatch
• get_column_stat() : WeightedFilter
• get_column_statistic() : ST_ML
• get_column_widths() : QueriedGroups
• get_command_data() : AWT_graphic_tree
• get_command_mode() : GEN_command_mode_param
• get_comment() : ED4_SearchPosition , GBT_config
• get_common() : AW_area_management , AW_GC , AW_GC_Xm , AW_stylable , AW_window , FINAL_TYPE< SEQTYPE >
• get_common_screen() : AW_device
• get_competent_child() : ED4_manager
• get_competent_clicked_child() : ED4_manager
• get_complement() : SearchSettings
• get_config() : AWT_configuration , FINAL_TYPE< SEQTYPE > , SaiAciApplicator , SaiBoolchainOperator , SaiOperator
• get_config_dbpath() : ConfigDefinition
• get_connecting_line() : AW_clicked_element
• get_consensus_manager() : ED4_multi_species_manager
• get_consensus_name_terminal() : ED4_multi_species_manager
• get_consensus_params() : ED4_root
• get_consensus_relevant_terminal() : ED4_base
• get_consensus_tree() : ConsensusTree
• get_content() : TaggedContentParser , Token
• get_content_as_string() : AW_selection_list
• get_copy() : GBS_strstruct
• get_corner() : AW::Rectangle
• get_count() : Alignment , DesignTargets , difflineMode , DistanceCounter , Refs< REF > , Sampler , TREE_canvas_registry , ValueCounter< T >
• get_current_color() : AW_gc_manager
• get_current_context() : ED4_WinContext
• get_current_list_elem() : List< Type >
• get_current_roots() : RootSynchronizer
• get_cursor() : AWT_graphic_tree , Data , SEC_root
• get_cutmask() : PART , PartitionSize
• get_data() : cache::CacheEntry< SMARTPTR > , EmblParser , EmblSwissprotReader , FormatReader , gb_extern_data , GBS_strstruct , GenbankParser , GenbankReader , Interpreter , MackeReader , Parser , SpecificAliData< T > , TextRef
• get_data_color() : AW_common
• get_data_color_size() : AW_common
• get_database() : CLI , ED4_host , ED4_plugin_host
• get_database_savename() : CLI
• get_dataPtr() : probe_input_data
• get_datasize() : DesignTargets
• get_date() : FINAL_TYPE< SEQTYPE >
• get_db() : ConfigDefinition , SEC_root
• get_db_path() : gb_hierarchy_location
• get_DeconstructedTree() : RootSynchronizer
• get_def() : RegFieldSelection
• get_default_display() : AW_selection_list
• get_default_value() : AW_selection_list
• get_defined_level() : ED4_manager
• get_definition() : GBT_config
• get_delete_error() : Deletable
• get_depth() : PrefixProbabilities
• get_descent() : AW_font_group
• get_descent_of_char() : AW_GC
• get_described_field() : FieldSelDef
• get_description() : ItemShader , PaperFormat , SaiOperator , SelectedDatabase , ShaderPlugin
• get_destination_loop() : FINAL_TYPE< SEQTYPE >
• get_device() : AW_window , ED4_WinContext , ED4_window , GEN_graphic
• get_device_manager() : ED4_root
• get_dimension() : ED4_folding_line , gc_range , ItemFieldShader , MultiFieldReader , ShaderPlugin , TopologyShader
• get_dir() : SelectedDatabase
• get_display() : AW_common_Xm
• get_display_style() : GEN_graphic
• get_displayed() : AW_selection , AW_selection_list_entry , AW_selection_list_iterator
• get_displayed_text() : FINAL_TYPE< SEQTYPE >
• get_dist() : PH_NEIGHBOURJOINING
• get_distance() : AW_clicked_element
• get_double_click_cb() : AW_area_management
• get_downdist() : NodeLeafDistance
• get_drag_gc() : AW_gc_manager , AWT_graphic
• get_dup_error() : ID_checker
• get_dup_tree() : Generation
• get_dupidx() : GroupRename_callenv
• get_ecol_width() : PD_formatter
• get_ed4w() : ED4_WinContext
• get_edge_iteration_count() : SearchedTree
• get_edge_PART() : RootSynchronizer
• get_elem() : list_elem< Type >
• get_elements_ahead() : ChainIteratorStage1
• get_end_pos() : ED4_SearchPosition
• get_entries() : AWT_config , ConfigMapping
• get_entry() : ArbTcpDat , AWT_config , Candidate , ConfigMapping
• get_entry_by_index() : MO_Liste
• get_entry_count() : AliEntryCounter
• get_enum_type() : FINAL_TYPE< SEQTYPE > , Ostring
• get_enumeration() : FINAL_TYPE< SEQTYPE >
• get_env() : GBL_call_env , GBL_command_arguments , QueryTarget
• get_errno() : ModRLimit
• get_error() : BI_helix , CLI , CommandOutput , DesignTargets , difflineMode , Distributor , ED4_block_operator , FieldTransfer::ItemClonedByRuleSet , FINAL_TYPE< SEQTYPE > , GroupBuilder , HelixAlignmentQuality , ParsedProbeMatch , PrimerDesign , ProbeMatchParser , RegExpr , SEC_structure_toggler , TrackedFiles , Writer
• get_error_count() : Location
• get_event() : AW_window
• get_exact() : SearchSettings
• get_expected() : arb_test::value_matcher< T >
• get_expected_children() : probe_combi_statistic
• get_export_sequence() : export_sequence_data
• get_exports() : Dragged
• get_extension_list() : ALI_PT
• get_family_list() : ALI_PT
• get_far() : Sonde
• get_fasta() : CLI
• get_father() : GBDATA , POS_TREE1
• get_fg_color() : AW_GC
• get_field() : RefEntries::RefSelector
• get_field_awarname() : RegFieldSelection
• get_field_count() : KeySorter
• get_field_filter() : FieldSelDef
• get_fieldname() : SpeciesFlag
• get_fig2dev_val() : PaperFormat
• get_file() : arb_test::locinfo
• get_FILE() : FileWriter
• get_filename() : ArbTcpDat , zinfo
• get_filter() : AliView , AP_sequence , ARB_seqtree_root , AW_device , ST_ML , StorableSelectionList
• get_filtered_length() : AP_filter , ST_ML
• get_filterpos_2_seqpos() : AP_filter
• get_first() : ED4_SearchResults , List< Type >
• get_first_at() : ED4_SearchResults
• get_first_field() : FINAL_TYPE< SEQTYPE >
• get_first_item() : MutableBoundItemSel , MutableItemSelector
• get_first_item_container() : MutableBoundItemSel , MutableItemSelector
• get_first_list_elem() : List< Type >
• get_first_name() : NameInformation
• get_first_pos() : ST_ML
• get_first_selected_species : AlignDataAccess
• get_first_starting_after() : ED4_SearchResults
• get_first_terminal() : ED4_manager
• get_fitness() : probe_combi_statistic
• get_fixpoint() : FINAL_TYPE< SEQTYPE > , SEC_base
• get_fixpoint_helix() : FINAL_TYPE< SEQTYPE >
• get_fixpoint_strand() : FINAL_TYPE< SEQTYPE >
• get_float() : AW_scalar
• get_following() : TextRef
• get_font_group() : SEC_root
• get_font_limits() : AW_common , AW_GC , AW_stylable
• get_font_overlap() : AW_clipable
• get_fontnr() : AW_GC
• get_fontsize() : AW_GC
• get_form() : AW_area_management
• get_format() : DisplayFormat
• get_formatter() : Output
• get_fp() : BufferedFileReader
• get_frame_level() : PARSIMONY_testenv< SEQTYPE >
• get_frameLevel() : AP_main
• get_frequencies() : ColumnStat
• get_full_name() : NameInformation
• get_fullname() : probe_input_data , SelectedDatabase
• get_function() : AW_GC_config
• get_function_name() : Prototype
• get_gb_main() : AliAdmin , AliView , AP_main , ARB_seqtree_root , AW_DB_selection , awt_input_mask_global , ClustersData , ColumnStat , DbScanner , ED4_root , export_sequence_data , FieldSelDef , GBL_call_env , GBL_command_arguments , GBL_env , GEN_graphic , GEN_map_window , GroupSearch , GroupUIdata , LocationEditor , NN_GlobalData , PH_root , PHDATA , QueryTarget , ST_ML , TreeAdmin::Spec , TreeAwarRegistry , WeightedFilter
• get_gb_tree() : ARB_seqtree_root
• get_gbd() : AW_DB_selection , GB_securityLevel
• get_gbmain() : AWT_graphic_tree , BoundActionTracker , InfoWindow , RefEntries::ReferringEntriesHandler , SaiCalcEnv
• get_gbt_tree() : ST_ML
• get_GC() : AW_common_Xm
• get_gc() : AW_GC_Xm , ListDisplayRow
• get_gc_base_name() : AWT_canvas
• get_gc_desc() : AW_gc_manager
• get_gen_root() : GEN_graphic
• get_geneabspos() : probe_input_data
• get_generation() : Generation
• get_graphic() : GEN_map_window
• get_graphic_tree() : AP_main , TREE_canvas
• get_grey_level() : AW_GC_config , AW_stylable
• get_group() : Candidate , TargetGroup
• get_group_consensus : AlignDataAccess
• get_group_cursor() : AWT_graphic_tree
• get_group_data() : Group
• get_group_display() : QueriedGroups
• get_group_name() : GroupXfer_callenv , TargetGroup , TreeNode
• get_group_scaling() : AP_tree_root
• get_group_size() : TargetGroup
• get_group_tab() : probe_tabs
• get_groupsize() : GroupPenalty
• get_grps_width() : PD_formatter
• get_head() : CursorPos
• get_head_aci() : CLI
• get_header() : DisplayFormat
• get_header_length() : SpeciesFlags
• get_header_text() : SpeciesFlags
• get_height() : AW_font_group , AW_font_limits
• get_helix() : ED4_host , ED4_plugin_host , FINAL_TYPE< SEQTYPE >
• get_helix_string : AlignDataAccess
• get_helixDef() : SEC_root
• get_hit_flag() : Bakt_Info
• get_hit_group() : GroupRename_callenv
• get_hit_reason() : FoundGroup
• get_hitdata_by_number() : Sonde
• get_Hitliste() : Sonde
• get_horizontal_folding() : ED4_foldable
• get_ID() : Cluster
• get_id() : ConfigDefinition , FINAL_TYPE< SEQTYPE > , gc_range , InputFormat , ItemShader , NameInformation , Seq , ShaderPlugin
• get_identified_item() : awt_input_mask_global
• get_ignored_words() : DupNameCriterion
• get_indent() : Formatter
• get_index() : CanvasRef , MatrixOrder , TREE_canvas
• get_index_by_entry() : MO_Liste
• get_index_of() : AW_selection_list
• get_index_of_selected() : AW_selection_list
• get_info() : TypedDatabaseCallback
• get_ingroup_ratio() : GroupPenalty
• get_inner() : LowDataCheck
• get_innermost_edges() : RootSynchronizer
• get_input() : SaiCalcEnv
• get_int() : AW_scalar , PS_FileBuffer
• get_internal_gene_name() : gene_struct
• get_internal_maskname() : awt_input_mask_global , FINAL_TYPE< SEQTYPE >
• get_inv_base_frequencies() : ST_ML
• get_irs_tree_ruler_scale_factor() : AWT_graphic_tree
• get_is_helix() : ColumnStat
• get_item() : TargetItem
• get_item_ref() : GBL_call_env , GBL_command_arguments
• get_item_type() : awt_item_type_selector
• get_items_name() : color_save_data
• get_itemtype() : awt_input_mask_global , FieldSelDef
• get_itemtypename() : FINAL_TYPE< SEQTYPE >
• get_keeled() : FoundGroup
• get_keeledStateInfo() : Candidate , TargetGroup
• get_key() : Header , QueryExpr , Token
• get_key_type() : QueryExpr
• get_key_word() : EmblSwissprotReader , GenbankReader
• get_keytype() : RegFieldSelection
• get_KL_settings() : PARSIMONY_testenv< SEQTYPE >
• get_known_count() : DesignTargets
• get_known_members() : SpecSet
• get_label() : awt_viewport
• get_laenge() : MO_Liste
• get_last() : List< Type >
• get_last_drawed_cursor_position() : SEC_root
• get_last_fg_color() : AW_GC
• get_last_ij() : PH_NEIGHBOURJOINING
• get_last_list_elem() : List< Type >
• get_last_pos() : ST_ML
• get_last_starting_before() : ED4_SearchResults
• get_last_terminal() : ED4_manager
• get_last_widget() : AW_root_Motif , AW_window
• get_lastname() : ChainEntryBuffer
• get_latest_ref() : RefContainer< REF >
• get_lazy_again() : LazyPersistantFlag
• get_leaf_aci() : CLI
• get_leaf_count() : AP_tree , FINAL_TYPE< SEQTYPE > , SearchedTree , TreeNode
• get_leafs() : LowDataCheck
• get_left_padding() : AWT_graphic_exports
• get_len() : Alignment , Bitvector , PART , Seq
• get_len_group_tabs() : probe_tabs
• get_length() : AliView , AP_filter , ColumnStat , ED4_abstract_sequence_terminal , ED4_consensus_sequence_terminal , ED4_sequence_terminal , ED4_text_terminal , FINAL_TYPE< SEQTYPE > , SizedCstr , TextRef
• get_length_hitliste() : Sonde , Sondentopf
• get_level() : UserFrame
• get_limits() : AW_font_group
• get_line() : arb_test::locinfo , AW_clicked_line
• get_line_style() : AW_GC_config
• get_line_width() : AW_GC_config
• get_lineno() : Ostring
• get_linenr() : Location
• get_linePropertyGC() : PaintData
• get_linewidth() : AP_tree
• get_list_display() : Cluster
• get_load_error() : SearchedTree
• get_local() : Interpreter
• get_location() : gb_hierarchy_callback , Parser
• get_logical_root() : AWT_graphic_tree
• get_long() : PS_FileBuffer
• get_longs() : PART , PartitionSize
• get_loop() : FINAL_TYPE< SEQTYPE >
• get_macro_id() : ALI_sellst_spec , SAI_sellst_spec , SelectionListSpec
• get_map_manager() : GEN_map_manager
• get_map_window() : GEN_map_manager
• get_mapped_item_id() : DbScanner
• get_mapped_itemID_awarname() : DbScanner
• get_mapping() : AWT_config_definition
• get_marked() : FoundGroup
• get_marked_count() : FINAL_TYPE< SEQTYPE > , TargetGroup
• get_marked_pc() : FoundGroup
• get_marker_display() : AWT_graphic_tree
• get_marker_name() : FINAL_TYPE< SEQTYPE > , MarkerDisplay , ProbeCollDisplay
• get_markerindex() : ClickedTarget
• get_mask() : SelectedDatabase
• get_maskid() : awt_input_mask_global
• get_maskname() : awt_input_mask_global , FINAL_TYPE< SEQTYPE >
• get_match() : GroupXfer_callenv
• get_match_count() : HitCounter
• get_matching_ed4w() : ED4_window
• get_matching_species() : Sonde
• get_matrix() : MatrixDisplay
• get_matrix_for() : ST_ML
• get_max() : AW_awar , LimitTracker< T > , ValueCounter< T >
• get_max_abs_diff() : LongBranchMarker
• get_max_ascent() : AW_font_group
• get_max_bond() : MaxBond
• get_max_depth() : DepthMarker
• get_max_descent() : AW_font_group
• get_max_designed_len() : PD_formatter
• get_max_dimension() : ItemFieldShader
• get_max_found_bootstrap() : TreeReader
• get_max_found_branchlen() : TreeReader
• get_max_height() : AW_font_group
• get_max_init_for_gen() : ProbeValuation
• get_max_len() : Alignment
• get_max_limits() : AW_font_group
• get_max_mismatches() : SearchSettings
• get_max_primer_length() : PrimerDesign
• get_max_primer_pos() : PrimerDesign
• get_max_rootdist() : DepthMarker
• get_max_screen_pos() : ED4_remap
• get_max_seq_length() : AlignmentReference
• get_max_value() : symmetric_matrix< T >
• get_max_width() : AW_font_group
• get_maxDistance() : FINAL_TYPE< SEQTYPE >
• get_maxelem() : Sonde
• get_maxsize() : PART
• get_mean() : ValueCounter< T >
• get_mean_distance() : Cluster
• get_median() : Sampler
• get_mem() : ChainEntryBuffer
• get_member_at_pos() : List< Type >
• get_member_at_pos_simple() : List< Type >
• get_member_count() : Cluster
• get_members() : Cluster , PART
• get_memory() : MemBlock
• get_min() : AW_awar , LimitTracker< T > , ValueCounter< T >
• get_min_bases() : FINAL_TYPE< SEQTYPE >
• get_min_bases_count() : CLI
• get_min_flag_distance() : SpeciesFlags
• get_min_ij() : PH_NEIGHBOURJOINING
• get_min_mismatches() : SearchSettings
• get_min_wanted_words() : DupNameCriterion
• get_minClusterSize() : FINAL_TYPE< SEQTYPE >
• get_minelem() : Sonde
• get_mismatch() : Hit
• get_mismatch_at_pos() : Hit
• get_mismatch_weight() : MatchRequest
• get_ml_vectors() : ST_ML
• get_mo_liste() : MO_Liste
• get_mode() : ED4_remap
• get_modifying_flag_ref() : AWT_graphic_exports
• get_mor() : Sonde
• get_most_recently_used_window() : ED4_root
• get_most_used() : MostUsedPos
• get_mp_window() : MP_Main
• get_msg() : Convaln_exception
• get_multi_species_manager() : ED4_abstract_group_manager , ED4_area_manager
• get_multilist() : PartialSequence
• get_name() : AbsLoc , Alignment , awt_mask_item , Bakt_Info , Candidate , CompactedSequence , ExplicitQueryKey , FINAL_TYPE< SEQTYPE > , FoundGroup , FunInfo , gc_range , Group , GroupAIDkey , GroupFoldedKey , GroupKeeledKey , GroupMarkedKey , GroupNameQueryKey , GroupSizeKey , GroupZombiesKey , NestingLevelKey , Parameter , ParentGroupNameQueryKey , PartialSequence , QueryKey , SearchedTree , Sonde , TrackedFile
• get_name_of_species() : ED4_base
• get_name_terminal() : FINAL_TYPE< SEQTYPE >
• get_name_type() : DupNameCriterion
• get_nameonly() : SelectedDatabase
• get_names() : SpeciesSpace
• get_NDS_Type() : FINAL_TYPE< SEQTYPE >
• get_needed_dest_alilen() : Realigner
• get_nesting() : FoundGroup
• get_new_group_size() : GroupXfer_callenv
• get_new_ref() : RefContainer< REF >
• get_newest_dir_modtime() : File_selection
• get_newick_file() : CLI
• get_next() : ED4_folding_line , ED4_SearchPosition , List< Type > , list_elem< Type >
• get_next_at() : ED4_SearchPosition
• get_next_item() : MutableBoundItemSel , MutableItemSelector
• get_next_item_container() : MutableBoundItemSel , MutableItemSelector
• get_next_segment() : FINAL_TYPE< SEQTYPE >
• get_next_selected_species : AlignDataAccess
• get_next_strand() : FINAL_TYPE< SEQTYPE >
• get_next_terminal() : ED4_base
• get_no_of_members() : List< Type >
• get_no_of_selected_species() : ED4_multi_species_manager
• get_no_of_species() : ED4_multi_species_manager
• get_node() : Group , Multiroot , PaintedNode
• get_non_group_tab() : probe_tabs
• get_nonmembers() : PART
• get_nr() : GEN_map_window
• get_nucl_seq() : DI_ENTRY
• get_num_of_bits() : Bitvector
• get_number() : Ostring
• get_object_spec() : ED4_objspec_registry
• get_object_spec_at_index() : ED4_objspec_registry
• get_objspec_registry : ED4_objspec_registry
• get_offset() : AW_zoomable
• get_offsets() : PT_compressed
• get_old_group_size() : GroupXfer_callenv
• get_oldData() : GBDATA
• get_oligo() : MatchingOligo
• get_op() : SaiBoolRule
• get_open_folded() : SearchSettings
• get_optional_param() : GBL_command_arguments
• get_origin() : PART
• get_origin_loop() : FINAL_TYPE< SEQTYPE >
• get_other_strand() : FINAL_TYPE< SEQTYPE >
• get_outgroup_ratio() : GroupPenalty
• get_Outside_Mismatch_no() : Sonde
• get_p_eval() : MP_Main
• get_pair() : LeafRelation
• get_pairs_def() : BI_pairdef
• get_param() : GBL_command_arguments
• get_param_smart() : GBL_command_arguments
• get_param_streams() : GBL_command_arguments
• get_parent() : ED4_base , MutableItemSelector
• get_parent_cache() : GroupSearchCommon
• get_parent_group() : GroupSearch
• get_parent_offset() : ED4_extension
• get_parent_sellist() : AW_subset_selection
• get_parsimony() : AWT_graphic_parsimony
• get_part() : DeconstructedTree , PartRegistry
• get_part_count() : DeconstructedTree , ListDisplayRow
• get_PartitionSize() : SpeciesSpace
• get_pat_gaps() : SearchSettings
• get_path() : Location
• get_pattern() : SearchSettings
• get_penalty() : GroupPenalty
• get_perform_mode() : GEN_extract_mode_param
• get_pid() : AbsLoc , ReadableDataLoc
• get_pipecmd() : zinfo
• get_pixel_width() : SpeciesFlags
• get_plain() : Mismatches
• get_pointer() : AW_scalar , FoundGroup , UnitPtr
• get_polygon() : FINAL_TYPE< SEQTYPE >
• get_pool_length() : ProbeValuation
• get_pos() : ClustersData , ED4_folding_line , list_elem< Type > , LocationEditor , PaintedNode
• get_pos_of_member() : List< Type >
• get_position() : GBS_strstruct , ParsedProbeMatch
• get_possible_descendants() : ED4_objspec
• get_prefix() : Package
• get_prefix_count() : PrefixProbabilities
• get_prev() : List< Type > , list_elem< Type >
• get_prev_terminal() : ED4_base
• get_previous_segment() : FINAL_TYPE< SEQTYPE >
• get_previous_strand() : FINAL_TYPE< SEQTYPE > , SEC_segment_iterator
• get_primers() : Pair
• get_print_device() : AW_area_management , AW_window
• get_print_width() : ListDisplayRow
• get_probe_combi() : probe_combi_statistic
• get_probe_pool() : ProbeValuation
• get_probe_region() : ParsedProbeMatch
• get_probe_region_offset() : ProbeMatch_impl , ProbeMatchParser
• get_progress() : InsertData
• get_prot_seq() : DI_ENTRY
• get_PT_local() : MatchRequest , Mismatches
• get_qual_width() : PD_formatter
• get_queried_itemtype() : QUERY::query_spec
• get_query() : NN_GlobalData
• get_quoting_mode() : CLI
• get_rand() : RandomNumberGenerator
• get_range_according_to_type() : ED4_block
• get_range_count() : LikelihoodRanges
• get_range_index() : gc_desc
• get_ranges() : StaticData
• get_rate_at() : ST_ML
• get_rates() : ColumnStat
• get_recalc_pos_atShow() : AW_window
• get_ref() : RefContainer< REF > , Refs< REF >
• get_refabspos() : ChainEntryBuffer , ChainIteratorStage1
• get_refcount() : RefContainer< REF >
• get_referring_item() : RefEntries::ReferringEntriesHandler
• get_refs() : RefEntries::RefSelector
• get_region() : SEC_base_part
• get_rel_angle() : SEC_oriented
• get_rel_attach() : ClickedTarget
• get_rel_match_count() : HitCounter
• get_rel_pos() : AW_clicked_element , DataLoc
• get_rem() : FINAL_TYPE< SEQTYPE >
• get_rem_count() : FINAL_TYPE< SEQTYPE >
• get_remaining_tables() : RealignAttempt
• get_remark() : TreeNode
• get_remark_ptr() : TreeNode
• get_report() : DepthMarker , DistanceCounter , EdgeDistances , LongBranchMarker
• get_representative() : Cluster
• get_rest() : Xfig_Eater
• get_rest_of_name() : NameInformation
• get_result() : CombinableSeq , FINAL_TYPE< SEQTYPE > , Pair , PrimerDesign
• get_result_length() : FINAL_TYPE< SEQTYPE >
• get_result_list() : NN_GlobalData
• get_result_ref() : FINAL_TYPE< SEQTYPE >
• get_result_window() : MP_Window
• get_results() : GroupSearch
• get_return_type() : Prototype
• get_reverse() : SearchSettings
• get_role() : SelectedDatabase
• get_root() : AW_window , AWT_graphic_tree , awt_input_mask_global , FINAL_TYPE< SEQTYPE > , SEC_base , SEC_base_part
• get_root_loop() : SEC_root
• get_root_node() : AWT_graphic_parsimony , AWT_graphic_tree , TreeNode
• get_rootside_helix() : FINAL_TYPE< SEQTYPE >
• get_rootside_loop() : FINAL_TYPE< SEQTYPE >
• get_rootside_strand() : FINAL_TYPE< SEQTYPE >
• get_rtransformed_cliprect() : AW_device
• get_SAI() : ALI_ARBDB
• get_SAI_background() : ED4_host , ED4_plugin_host
• get_SAI_name() : CLI
• get_scale() : AW_zoomable
• get_scaling() : FamilyFinder
• get_score() : Candidate , Distributor
• get_screen() : AW_common
• get_screen_device() : AW_area_management
• get_screen_pos() : ED4_cursor
• get_screen_relative_pos() : ED4_cursor
• get_scrollarea_size() : AW_window
• get_scrolled_picture_height() : AW_window
• get_scrolled_picture_width() : AW_window
• get_search_background() : ED4_host , ED4_plugin_host
• get_selected_ali() : AliAdmin
• get_selected_group() : AWT_graphic_tree , GroupUIdata
• get_selected_item() : awt_input_mask_global , InfoWindow , MutableItemSelector
• get_selected_range : AlignDataAccess , GEN_root
• get_selected_type() : RegFieldSelection
• get_selected_value() : AW_selection_list
• get_selector() : awt_input_mask_global , DbScanner , Itemfield_Selection
• get_self_awar() : awt_item_type_selector , EXP_item_type_species_selector , FINAL_TYPE< SEQTYPE > , GEN_item_type_species_selector
• get_self_awar_content_length() : awt_item_type_selector , EXP_item_type_species_selector , FINAL_TYPE< SEQTYPE > , GEN_item_type_species_selector
• get_sellist() : AW_selection , TypedSelectionList
• get_sensitivity() : DupNameCriterion
• get_seq() : ARB_seqtree , PT_compressed , Seq
• get_seq_aci() : CLI
• get_seq_data() : export_sequence_data
• get_seq_gaps() : SearchSettings
• get_seq_len() : PHDATA
• get_seq_pos() : CursorPos
• get_seqTemplate() : ARB_seqtree_root
• get_sequence() : ALI_ARBDB , AP_sequence_simple_protein , FINAL_TYPE< SEQTYPE >
• get_sequence_copy() : ED4_consensus_sequence_terminal , ED4_sequence_terminal
• get_sequence_dists() : FINAL_TYPE< SEQTYPE >
• get_sequence_end() : SEC_region
• get_sequence_length() : AP_sequence
• get_sequence_pos() : ED4_cursor
• get_sequence_position() : ED4_base_position
• get_sequence_start() : SEC_region
• get_sequence_string() : ALI_ARBDB
• get_sequences : gde_database_access
• get_server_count() : ArbTcpDat
• get_serverID() : ArbTcpDat
• get_shader_local_id() : ShaderPlugin
• get_shared_id() : TypedSelectionList
• get_shortestPattern() : SearchTree
• get_shortname() : probe_input_data , SpeciesFlag
• get_show_constraints() : SEC_root
• get_shown_at() : ED4_SearchResults
• get_simplify_table() : AP_filter
• get_size() : AP_matrix , AW_size_tracker , ChainEntryBuffer , ED4_extension , FoundGroup , LinePart , PH_display_status , probe_input_data , PT_compressed
• get_size_as_Rectangle() : AW_size_tracker
• get_size_device() : AW_area_management , AW_window
• get_size_information() : AW_device_size
• get_size_information_inclusive_text() : AW_device_size
• get_size_information_unscaled() : AW_device_size
• get_size_sondenarray() : ProbeValuation
• get_smart() : GBL_streams
• get_sondenarray() : ProbeValuation
• get_sourceline() : Parser
• get_sourcename() : Parser
• get_species() : FINAL_TYPE< SEQTYPE > , ListDisplayRow , PartialSequence
• get_species_count() : TreeContainer
• get_species_index() : SpeciesSpace , SpecSetRegistry
• get_species_name() : SpeciesSpace
• get_species_names() : TreeContainer
• get_species_pointer() : ED4_base
• get_species_type() : ED4_base
• get_SpeciesSpace() : RootSynchronizer
• get_stage() : probe_struct_global
• get_start() : probe_input_data
• get_start_pos() : ED4_SearchPosition
• get_state() : FINAL_TYPE< SEQTYPE >
• get_states() : FINAL_TYPE< SEQTYPE >
• get_stc() : MP_Main
• get_stderrput() : CommandOutput
• get_stdoutput() : CommandOutput
• get_step_size() : ST_ML
• get_stop() : probe_input_data
• get_string() : AW_scalar
• get_string_size() : AW_GC , AW_stylable
• get_style() : AW::FillStyle
• get_sum() : Sampler
• get_symbol() : BI_pairdef
• get_tab() : PH_display_status
• get_table_entry_size() : chartable::SepBaseFreq
• get_tag() : TaggedContentParser
• get_tagged_count() : FINAL_TYPE< SEQTYPE >
• get_tail() : CallbackList< CB >
• get_target_data() : ExplicitQueryKey , FINAL_TYPE< SEQTYPE > , GroupAIDkey , GroupFoldedKey , GroupKeeledKey , GroupMarkedKey , GroupNameQueryKey , GroupSizeKey , GroupZombiesKey , NestingLevelKey , ParentGroupNameQueryKey , QueryKey
• get_TargetRange() : FamilyFinder
• get_temperature() : ProbeIterator
• get_terminal() : CursorPos
• get_test_count() : SimpleTester
• get_text() : ListDisplayRow
• get_threshold() : FINAL_TYPE< SEQTYPE >
• get_timestamp() : AP_filter
• get_title() : ALI_sellst_spec , FINAL_TYPE< SEQTYPE > , Helpfile , SAI_sellst_spec , SelectionListSpec
• get_tokens() : Data
• get_top_middle_line_terminal() : FINAL_TYPE< SEQTYPE >
• get_top_middle_spacer_terminal() : FINAL_TYPE< SEQTYPE >
• get_top_padding() : AWT_graphic_exports
• get_tracked_positions() : AW_trackPositions_device
• get_tracker() : AW_root
• get_transaction_level() : GB_MAIN_TYPE
• get_tree() : ArbParsimony , CLI , TreeContainer
• get_tree_count() : TreeContainer
• get_tree_data() : FoundGroup , SearchedTree
• get_tree_info() : TreeContainer
• get_tree_name() : ARB_seqtree_root , FoundGroup , QUERY::DbQuery
• get_tree_order() : FoundGroup
• get_tree_PART() : RootSynchronizer , TreeParts
• get_tree_remark() : ConsensusTreeBuilder
• get_tree_root() : AP_main , AWT_graphic_parsimony , AWT_graphic_tree , SearchedTree , TreeNode
• get_tree_shader() : AP_tree
• get_tree_style() : AWT_graphic_tree
• get_tree_type() : DupCriteria
• get_treeimport_filename() : CLI
• get_treename() : CLI , GBL_call_env , GBL_command_arguments , GBL_env
• get_ttratio() : ColumnStat
• get_tu() : SearchSettings
• get_type() : ARB_edge , AW_awar , ED4_block , FilterDefinition , FINAL_TYPE< SEQTYPE > , gc_range , Ostring , Parameter , POS_TREE1 , POS_TREE2 , QueryKey , SaiOperator , SelectedDatabase , TypedDatabaseCallback
• get_type_awarname() : RegFieldSelection
• get_type_filter() : FieldSelDef , Itemfield_Selection
• get_type_name() : AW_scalar
• get_type_path() : ColumnStat
• get_TypeClass() : Parameter , Type
• get_typedsellist() : StorableSelectionList
• get_uint() : PS_FileBuffer
• get_ulong() : PS_FileBuffer
• get_unique() : GEN_unique_param
• get_unique_id() : PartitionSize , TypedSelectionList
• get_unknown() : GroupPenalty
• get_unknown_members() : TSpecSet
• get_unmated_type() : RegFieldSelection
• get_unscale() : AW_zoomable
• get_unscaleable_overlap() : AW_device_size
• get_updated_SpeciesSet() : MasterCanvas
• get_updist() : NodeLeafDistance
• get_upgroup_info() : Cluster
• get_usequence() : FINAL_TYPE< SEQTYPE >
• get_user_push_counter() : AP_main , PARSIMONY_testenv< SEQTYPE >
• get_value() : ALI_PATHMAP , AW_selection_list_entry , AW_selection_list_iterator , awt_mask_awar_item , awt_mask_item , FINAL_TYPE< SEQTYPE > , Token
• get_value_at() : AW_selection_list
• get_values() : AW_selection
• get_variance() : VarianceSampler
• get_vector() : Bitvector
• get_vertical_folding() : ED4_foldable
• get_warnings() : TreeReader
• get_weight() : PART
• get_weighted() : Mismatches
• get_weights() : AliView , AP_sequence , AP_weights , ARB_seqtree_root , ColumnStat
• get_whatsFound() : ED4_SearchPosition
• get_width() : AW_font_group , SpeciesFlag
• get_width_of_char() : AW_GC
• get_win_area() : ED4_base
• get_window() : AliAdmin , BranchWindow , FINAL_TYPE< SEQTYPE > , MP_Window
• get_window_id() : AW_common_Xm , AW_window
• get_window_rect() : ED4_scrolled_rectangle
• get_window_size() : AW_window
• get_window_title() : AW_window
• get_word_count() : GroupInfo
• get_word_separators() : DupNameCriterion
• get_world_rect() : ED4_scrolled_rectangle
• get_x_padding() : AWT_graphic_exports
• get_x_string() : XString
• get_x_string_length() : XString
• get_xfont() : AW_common_Xm , AW_GC_Xm
• get_XOR_color() : AW_common
• get_xpos() : SpeciesFlag
• get_xString() : SEC_root
• get_y_padding() : AWT_graphic_exports
• get_ypos() : ListDisplayRow
• get_zombie_count() : FINAL_TYPE< SEQTYPE > , TargetGroup
• get_zombies_and_duplicates() : AWT_graphic_tree
• getAbsPos() : XString
• getAccessionNumber() : MetaInfo
• getACI() : FieldTransfer::ReadRule
• getActiveColorRangeID() : AW_gc_manager
• getAlignment() : export_sequence_data
• getAliLen() : export_sequence_data
• GetAliType() : ED4_abstract_sequence_terminal , ED4_orf_terminal , ED4_sequence_terminal
• getAllGeneSize() : GenePositionMap
• getBackgroundColor() : SEC_root
• getBaseCounter() : SequenceBuffer
• getBasePos() : SEC_region
• getCapacity() : PS_BitSet
• getChild() : PS_Node
• getChildrenBegin() : PS_Node
• getChildrenEnd() : PS_Node
• getChildrenRBegin() : PS_Node
• getChildrenREnd() : PS_Node
• getClusters() : FINAL_TYPE< SEQTYPE >
• getCma() : FINAL_TYPE< SEQTYPE >
• GetColor() : FINAL_TYPE< SEQTYPE >
• getColorRangeNames() : AW_gc_manager
• getColumnRange() : ProbeMatchParser
• getComment() : FieldTransfer::RuleSet
• getConfig() : FieldTransfer::Rule
• getConfigInfo() : AWT_configuration_selection
• getConstRootNode() : FINAL_TYPE< SEQTYPE >
• getCount() : BaseCounter , CharCounter , SEC_structure_toggler , UsedColor
• getCountFor() : FINAL_TYPE< SEQTYPE >
• getCountOfTrues() : FINAL_TYPE< SEQTYPE > , PS_BitMap , PS_BitSet
• getDetachID() : InfoWindow
• getDistance() : AWT_distance_meter
• getDistanceMeter() : AWT_translator
• getDotlist() : CompactedSequence
• getEdge() : ResourceStack
• getEntries() : MetaInfo
• getEntropy() : FINAL_TYPE< SEQTYPE >
• getError() : ErrorOr< TYPE > , FieldTransfer::TransportedData , QueryExpr , SaiCalculator , SequenceHandler
• getFalseIndices() : PS_BitSet
• getFalseIndicesFor() : FINAL_TYPE< SEQTYPE > , PS_BitMap
• getFalseIndicesForRow() : FINAL_TYPE< SEQTYPE >
• getFamilyFinder() : SearchRelativeParams
• getFamilyList() : FamilyFinder
• getFeatureTableLine() : Importer
• getFilename() : BufferedFileReader , FINAL_TYPE< SEQTYPE > , LineReader
• getFirstName() : validNames::Desco
• getFloat() : FieldTransfer::TransportedData
• getGroup() : Dict
• getHeadline() : saiProbeData
• getHelixPositions() : SEC_root
• getHelixString() : AlignDataAccess
• getIDForName() : FINAL_TYPE< SEQTYPE >
• getIndex() : UsedColor
• getInt() : FieldTransfer::TransportedData
• getJointEntropy() : FINAL_TYPE< SEQTYPE >
• getJoinType() : ComplementLocation , JoinedLocation , Location , SimpleLocation
• getKeyPath() : awt_item_type_selector , EXP_item_type_species_selector , FINAL_TYPE< SEQTYPE > , GEN_item_type_species_selector
• getKeys() : Reference , References
• getLength() : XString
• getLine() : LineReader
• getLine_intern() : BufferedFileReader
• getLineNo() : Reader
• getLineNumber() : LineReader
• getLink() : NameServerConnection
• getLoader() : FINAL_TYPE< SEQTYPE >
• getLocation() : Feature
• getLocs() : NameServerConnection
• getMarkRate() : NodeMarkers
• GetMatchesContext() : GetMatchesContext
• getMaxID() : FINAL_TYPE< SEQTYPE >
• getMaxUsedIndex() : PS_BitSet
• getMessage() : DBerror
• getMI() : FINAL_TYPE< SEQTYPE >
• getMinID() : FINAL_TYPE< SEQTYPE >
• getMIp() : FINAL_TYPE< SEQTYPE >
• getMismatches() : ED4_SearchPosition
• getMsaLen() : FINAL_TYPE< SEQTYPE >
• getName() : FINAL_TYPE< SEQTYPE > , KeyInfo , PosGene
• getNameForID() : FINAL_TYPE< SEQTYPE >
• getNext() : Reader
• getNextAbspos() : SEC_base_part
• getNode() : ResourceStack , Store_species
• getNodeSize() : NodeMarkers
• getNum() : PS_Node
• getOpenCb() : AWT_registered_itemtype
• getOriginalKey() : Dict
• getOutTrans() : SaiBoolchainOperator
• getOverlap() : GenePositionMap
• getParameters() : ArbProbeCollection , ArbProbeMatchWeighting
• getParentMap() : PS_Candidate
• getPointer() : auto_delete_array_ptr< T > , auto_delete_ptr< T > , auto_free_ptr< T > , Counted< T, AP > , custom_dealloc_ptr< T, DEALLOC >
• getPosition() : PosGene , StringParser
• getPositionMap() : FINAL_TYPE< SEQTYPE >
• getPrimerSequence() : Item
• getProbesBegin() : PS_Node
• getProbesEnd() : PS_Node
• getProbeTarget() : saiProbeData
• getProbeTargetLen() : saiProbeData
• getPtr() : FieldTransfer::RuleSet
• getQualifiers() : Feature
• getRealHits() : FamilyFinder
• getRoot() : FINAL_TYPE< SEQTYPE >
• getRootNode() : FINAL_TYPE< SEQTYPE >
• getRule() : SaiBoolchainOperator
• getSAIname() : FINAL_TYPE< SEQTYPE >
• GetSecondaryStructureInfo() : Structure3D
• getSecondName() : validNames::Desco
• getSeparator() : FieldTransfer::ReadRule
• getSeqPtr() : Alignment
• getSequence() : SequenceBuffer
• getSequenceCopy() : FINAL_TYPE< SEQTYPE >
• getSequences() : FINAL_TYPE< SEQTYPE >
• getShortDescription() : FieldTransfer::Rule
• getSize() : SQ_GroupData
• getSourceFields() : FieldTransfer::ReadRule
• getSpeciesCount() : FINAL_TYPE< SEQTYPE >
• getString() : FieldTransfer::TransportedData
• getTargetType() : FieldTransfer::WriteRule
• getTracker() : AW_root
• getTrueIndices() : PS_BitSet
• getTrueIndicesFor() : FINAL_TYPE< SEQTYPE > , PS_BitMap
• getTrueIndicesForRow() : FINAL_TYPE< SEQTYPE >
• getType() : ED4_cursor , Feature , FieldTransfer::TransportedData , FINAL_TYPE< SEQTYPE > , PosGene , SEC_base , validNames::Desco
• getUnwrappedFeatureTableLine() : Importer
• getValue() : DecisionTree , ErrorOr< TYPE >
• getWindow() : AWT_registered_itemtype
• getXcount() : XString
• getXleftOf() : XString
• gfx : AWT_canvas
• ginitCallback : GLwDrawingAreaPart
• gl_Canvas : RNA3D_Global
• gl_struct() : gl_struct
• global_mask : AW_root
• global_variables : import_format
• Globals() : Globals
• GlobalStringBuffers() : GlobalStringBuffers
• globalTypemap : Type
• GLRenderer() : FINAL_TYPE< SEQTYPE >
• glw : RNA3D_Global
• glwDrawingArea : _GLwDrawingAreaRec
• glwDrawingArea_class : _GLwDrawingAreaClassRec
• gone_tree_name : AP_tree_root
• good() : BufferedFileReader
• gotData() : BasePosition
• gotoNext() : FastSearchOccurrence
• gpos_width : format_props
• gr : AP_tree
• granted() : remote_awars
• graphic : gene_container_changed_cb_data , SEC_db_interface
• graphic_tree() : PARSIMONY_testenv< SEQTYPE >
• GRAPHICS : Structure3D
• green : ColorRGBf
• greenSize : GLwDrawingAreaPart
• grey_level : AW_GC_config
• greyzone : awar_vars
• group : ConsensusBuildParams
• Group() : Group
• group : NA_Alignment
• group_closed : IRS_data
• group_folding() : group_folding
• group_match() : arb_test::group_match
• group_nr : DI_ENTRY
• group_rest_tree() : AWT_graphic_tree
• group_scaling() : group_scaling
• group_tree() : AWT_graphic_tree
• groupb : NA_Sequence
• GroupBuilder() : GroupBuilder
• GroupChanges() : GroupChanges
• GroupCluster() : GroupCluster
• grouped : AP_tree_members
• groupf : NA_Sequence
• groupid : NA_Sequence
• GroupInfo() : GroupInfo
• GroupIterator() : GroupIterator
• groupLabel() : ACI_Labeler , FINAL_TYPE< SEQTYPE > , Node_ID_Labeler , TreeLabeler
• GroupMarkedKey() : GroupMarkedKey
• GroupMatchScorer() : GroupMatchScorer
• GroupPenalty() : GroupPenalty
• GroupRename_callenv() : GroupRename_callenv
• groups : ARB_tree_info , cached_taxonomy
• groupScale : AWT_graphic_tree
• GroupSearch() : GroupSearch
• GroupSearchCommon() : GroupSearchCommon
• GroupSearchRoot() : FINAL_TYPE< SEQTYPE >
• GroupSearchTree() : FINAL_TYPE< SEQTYPE >
• GroupTree() : FINAL_TYPE< SEQTYPE >
• GroupTreeRoot() : FINAL_TYPE< SEQTYPE >
• GroupUIdata() : GroupUIdata
• GroupXfer_callenv() : GroupXfer_callenv
• gs : g_b_undo_entry
• guess_pc() : Location