Here is a list of all class members with links to the classes they belong to:

- r -

• r() : AW_rgb16 , AW_rgb_diff , AW_rgb_normalized , AW_screen_area , AW_world , complex , doublecomplex , g_b_undo_mgr , Multitype
• rad2deg : AW::Angle
• radian() : AW::Angle
• raise() : Flag
• RandomNumberGenerator() : RandomNumberGenerator
• range : AlignParams , FamilyFinder
• Range() : Range
• range() : Range
• Range() : Range
• range_offset() : FINAL_TYPE< SEQTYPE > , NoTuple , ValueTuple
• rate_len : AP_rates
• rates : AP_rates , AP_tree_root
• rating : Pair
• RatioLimits() : RatioLimits
• rbegin() : RangeList
• RDP_comments() : RDP_comments
• RDPid : SeqInfo
• reactivate() : InfoWindow , InfoWindowRegistry
• read() : AWT_config_definition , DB_scalable , FINAL_TYPE< SEQTYPE > , hash , PS_Node , SEC_region , var_ref
• read_as_string() : AW_awar
• read_cache() : MarkerDisplay
• read_char_pntr() : AW_awar , SequenceHandler
• read_data() : ArbImporter , SEC_root
• read_data_from_db() : FINAL_TYPE< SEQTYPE >
• read_float() : AW_awar
• read_format() : ArbImporter
• read_int() : AW_awar
• read_line() : ArbImporter
• read_local() : Interpreter
• read_one_entry() : EmblSwissprotReader , FormatReader , GenbankReader , MackeReader
• read_only : arb_params
• read_pointer() : AW_awar
• read_pos : ChainIteratorStage1::_U::_L
• read_string() : AW_awar , SequenceHandler
• read_this_sequence_line_too : import_format
• read_tree_settings() : AWT_graphic_tree , FINAL_TYPE< SEQTYPE >
• readable_string() : arb_test::StaticCode
• readable_type() : FINAL_TYPE< SEQTYPE >
• readable_value() : arb_test::expectation_group , arb_test::FINAL_TYPE< T > , arb_test::matchable
• ReadableDataLoc() : ReadableDataLoc
• readbit() : Bitvector
• ReadCoOrdinateFile() : Structure3D
• readData() : MultiFastaWriter
• reader : Parser
• Reader() : Reader
• readFeatureTableLine() : Importer
• readFrom() : FieldTransfer::ReadRule
• readHelp() : Helpfile
• READONLY : FINAL_TYPE< SEQTYPE > , PS_FileBuffer
• ReadRule() : FieldTransfer::ReadRule
• readString() : MultiFastaWriter
• ready_to_draw() : AW_device
• real_hits : FamilyFinder
• real_sequence_length : ShowHelix_cd
• realign_seq() : Realigner
• RealignAttempt() : RealignAttempt
• Realigner() : Realigner
• RealmaxAA() : AWT_translator
• realpos : StrandPositionData
• reason : ColumnWidths , GLwDrawingAreaCallbackStruct
• rebuild_consensi() : ED4_manager
• rec_type : KL_params
• rec_width : KL_params
• recalc() : SEC_root
• recalc_descendants() : ED4_objspec
• recalc_font_group() : ED4_root
• recalc_marked_from_sons() : FINAL_TYPE< SEQTYPE >
• recalc_marked_from_sons_and_forward_upwards() : FINAL_TYPE< SEQTYPE >
• recalc_pos_atShow() : AW_window
• recalc_size_atShow() : AW_window
• recalcCounters() : FINAL_TYPE< SEQTYPE >
• RecalcNeeded() : RecalcNeeded
• recall() : LooseBases
• recallOrUninstall() : AW_timer_cb_struct
• recAuth() : remote_awars
• recent : ArbProgress::nestable
• recompute_and_write_folding() : AP_tree
• reconfigure() : ALI_selection , BoundActionTracker , db_interrupt_data
• RecordingMacro() : RecordingMacro
• rect : AWT_canvas
• Rectangle() : AW::Rectangle
• red : ColorRGBf
• redraw() : ED4_cursor
• redSize : GLwDrawingAreaPart
• reduce : arb_prm_struct
• reduce_bottom_clip_border() : AW_clipable
• reduce_left_clip_border() : AW_clipable
• reduce_right_clip_border() : AW_clipable
• reduce_top_clip_border() : AW_clipable
• reduceChildren() : PS_Candidate
• reduceClipBorders() : AW_clipable
• ref : GenbankRef , hash
• ref_terminals : ED4_root
• refabspos : ChainIteratorStage1::_U::_L , PT_long_chain_header
• RefBareT : TypeOp< T > , TypeOp< T & > , TypeOp< T const > , TypeOp< void >
• refCandidatesList : preserve_para
• RefConstT : TypeOp< T > , TypeOp< T & > , TypeOp< T const > , TypeOp< void >
• refcount : gb_transaction_save
• reference : ED4_root
• Reference() : Reference
• reference_is_a_consensus() : ED4_reference
• reference_species_is() : ED4_reference
• References() : References
• references() : SmartPtr< T, C >
• ReferringEntriesHandler() : RefEntries::ReferringEntriesHandler
• refill_result_list() : GroupUIdata
• refill_species_list() : ImportTestData
• RefPtr() : RefPtr< T >
• refresh() : AW_selection , AW_selection_list , ED4_update_info
• refresh_all() : PT_selection
• refresh_all_results() : GroupSearchCommon
• refresh_all_windows() : ED4_root
• refresh_display : AlignDataAccess
• refresh_flag_ok() : ED4_manager
• refresh_horizontal_scrolling : ED4_update_info
• refresh_if_needed() : SlaveCanvas
• refresh_needed : ED4_work_info , ST_ML
• refresh_option_menu() : AW_window
• refresh_requested_by_child() : ED4_manager
• refresh_results_after_DBchanges() : GroupSearch
• refresh_sai_display : ProbeMatchEventParam
• refresh_sai_selection_list() : ColumnStat
• refresh_toggle_field() : AW_window
• refresh_vertical_scrolling : ED4_update_info
• Refs() : Refs< REF >
• RefSelector() : RefEntries::RefSelector
• RefT : TypeOp< T > , TypeOp< T & > , TypeOp< T const > , TypeOp< void >
• regexpr : GBS_string_matcher
• RegExpr() : RegExpr
• RegFieldSelection() : RegFieldSelection
• Register() : UserlandCheck
• register_as_performed() : CheckedConsistencies
• register_canvas() : TREE_canvas_registry
• register_directory() : DuplicateLinkFilter
• register_item_check() : CheckedConsistencies
• register_objspec() : ED4_objspec_registry
• register_plugin() : FINAL_TYPE< SEQTYPE > , ItemShader
• registerFont() : AW_font_group
• registerInfoWindow() : InfoWindowRegistry
• registerTree() : SpecSetRegistry
• registerUnfound() : GroupPenalty
• registrate() : RegFieldSelection
• RegMatch() : RegMatch
• rehash_mapping() : ed_key
• reinit() : FINAL_TYPE< SEQTYPE > , InputFormat , PS_FileBuffer
• reinit_char_table() : ED4_group_manager
• reinit_gen_root() : GEN_graphic
• reinit_NDS() : GEN_gene , GEN_root
• reinit_refs() : RefContainer< REF >
• reinterpret_as_continued_line() : FeatureLine
• rek : GEN_NodeTextBuilder
• rel_2_abs() : BasePosition
• rel_data : gb_extern_data
• rel_entries : gb_index_files
• rel_father : GBDATA
• rel_header : gb_data_list
• rel_hl_gbd : gb_header_list
• rel_ie_gbd : gb_if_entries
• rel_ie_next : gb_if_entries
• rel_if_next : gb_index_files
• rel_ifs : GBCONTAINER
• rel_matches : FamilyList
• rel_offset : NA_Alignment
• relation() : arb_test::predicate_matcher< T, FUNC > , arb_test::value_matcher< T >
• relative() : TreePositionLookup
• relative_position_in() : ARB_countedTree
• relayout() : SEC_root
• release() : BoundActionTracker , cache::CacheHandle< SMARTPTR > , ClientActionTracker , GBS_strstruct , MacroRecorder , PartialSequence
• release_main_idx() : GB_MAIN_TYPE
• release_memfriendly() : GBS_strstruct
• relink() : AP_tree , AP_tree_edge , awt_input_handler , awt_linked_to_item , FINAL_TYPE< SEQTYPE >
• relink_tree() : AP_tree
• reload() : ED4_seq_colors
• reload_on_reinit() : FINAL_TYPE< SEQTYPE >
• remap() : ED4_root_group_manager , MG_remap , MG_remaps
• remap_scanner() : ImportTestData
• RemapToDatabase() : DbScanner
• remark : NodeState
• remark_awar() : AliAdmin
• remark_name() : AliAdmin
• remember() : AP_main
• remember_and_rollback_to() : AP_main
• remember_and_rollback_to_previous() : AP_main
• remember_current() : List< Type >
• remember_user_state() : AP_main
• rememberState() : FINAL_TYPE< SEQTYPE >
• remote : db_interrupt_data
• remote_awars() : remote_awars
• remote_hash : GB_MAIN_TYPE
• remove() : AngleBuffer
• REMOVE() : AP_tree
• remove() : ArbProbeCollection , AW_root_cblist , awt_input_mask_id_list , CharPtrArray , ClustersData , ED4_SearchPosition
• REMOVE() : FINAL_TYPE< SEQTYPE >
• remove() : GroupSearchCommon , PH_NEIGHBOUR_DIST , SEC_structure_toggler , Store_species
• remove_accepted_lines() : DiffLines
• remove_all_callbacks() : ED4_root
• remove_all_results() : GroupUIdata
• remove_awar_callbacks() : awt_item_type_selector
• remove_awarItem_callbacks() : awt_mask_awar_item
• remove_bootstrap() : TreeNode
• remove_button_from_sens_list() : AW_root
• remove_callback() : AW_awar , AW_helix , TrackedFile
• remove_callbacks() : ED4_base , ED4_manager , ED4_terminal
• remove_callbacks_that() : CallbackList< CB >
• remove_cb() : ED4_cb_list< BASE, BASECB >
• remove_db_callbacks() : awt_linked_to_item
• remove_delete_callback() : ED4_manager
• remove_elem() : ED4_list< T >
• remove_first() : List< Type >
• remove_from_highlighted() : ED4_root
• remove_hierarchy_cb() : GB_MAIN_TYPE
• remove_hit() : GroupSearch , QueriedGroups
• remove_id() : awt_input_mask_global
• remove_last() : List< Type >
• remove_leafs() : AP_tree_root
• remove_local_id() : awt_input_mask_global
• remove_member() : ED4_container
• remove_member_from_list() : List< Type >
• remove_name() : awt_mask_item
• remove_pos_from_list() : List< Type >
• remove_remark() : TreeNode
• remove_selected_result() : GroupUIdata
• remove_sequence_changed_cb() : FINAL_TYPE< SEQTYPE >
• remove_son() : FINAL_TYPE< SEQTYPE > , XML_Comment , XML_Node , XML_Text
• removeProbe() : PS_Node
• removeProbes() : PS_Node
• rename_by_ACI() : FoundGroup
• rename_found_groups() : GroupSearch
• rename_group() : GroupSearch
• rename_if() : BoundTreeAwarCallback
• rename_listed_groups() : GroupUIdata
• rename_selected_group() : GroupUIdata
• rend() : RangeList
• renumberDuplicateGenes() : DBwriter
• reorder_subset_cb() : AW_subset_selection
• reorder_subtree() : SortByTopo
• reorder_tree() : TreeNode
• reorderTree() : AWT_graphic_tree
• repeat_count : ED4_work_info
• repeated() : Writer
• rephase() : Phaser
• replace() : ArbProbeCollection , ConstStrArray , FieldTransfer::RuleSet , FINAL_TYPE< SEQTYPE > , SetOnce
• replace_id() : Seq
• replace_msg() : Convaln_exception
• replace_node() : Multiroot
• replace_op() : replace_op
• replace_seq() : ARB_seqtree
• replace_x_width_link_to() : ED4_scrolled_rectangle
• replaceAll() : difflineMode
• replaceBy() : DI_GLOBAL_MATRIX
• report : AlignParams
• request_refresh() : AWT_canvas , AWT_graphic_exports , ED4_base , ED4_manager , ED4_terminal
• request_Refresh() : SlaveCanvas
• request_refresh_for_all_terminals() : ED4_root
• request_refresh_for_consensus_terminals() : ED4_root
• request_refresh_for_sequence_terminals() : ED4_root
• request_refresh_for_specific_terminals() : ED4_root
• request_resize() : AWT_canvas , AWT_graphic_exports , ED4_base
• request_resize_of_linked() : ED4_base
• request_save() : AWT_canvas , AWT_graphic_exports
• request_save_and_zoom_reset() : AWT_canvas , AWT_graphic_exports
• request_SetUpdate() : SlaveCanvas
• request_structure_update() : AWT_canvas , AWT_graphic_exports
• request_update() : FINAL_TYPE< SEQTYPE >
• request_zoom_reset() : AWT_canvas , AWT_graphic_exports
• requested_undo_type : GB_MAIN_TYPE
• required() : arb_test::group_match
• RequiresActionTracker() : RequiresActionTracker
• reread() : SEC_displayParams
• reread_display_params() : SEC_root
• reseed() : RandomNumberGenerator
• reselect_file() : SelectedDatabase
• reselect_from_awar() : SelectedDatabase
• reserve() : CharPtrArray , FINAL_TYPE< SEQTYPE > , PS_BitMap , PS_BitSet
• reserve_gcs() : AW_gc_manager
• reserve_space() : CharPtrArray
• reset() : AlignBuffer , ArbMatchResultsManager , AW_device , AW_font_limits , AW_GC , AW_zoomable , AWT_config_definition
• Reset() : AWT_configuration
• reset() : Distributor , ED4_foldable , ED4_scrolled_rectangle , ExplicitQueryKey , FINAL_TYPE< SEQTYPE > , HeaderList , LimitedTime , LineReader , ParentGroupNameQueryKey , Partition , PrefixIterator , QueryKey
• reset_all_for_new_config() : ED4_window
• reset_angle() : AP_tree
• reset_angles() : FINAL_TYPE< SEQTYPE > , SEC_base
• reset_both_child_angles() : AP_tree_members
• reset_both_child_linewidths() : AP_tree_members
• reset_branchlengths() : TreeNode
• reset_child_layout() : AP_tree_members
• reset_child_spread() : AP_tree_members
• reset_consensus_params() : ED4_root
• reset_layout() : AW_window
• reset_length_and_bootstrap() : TreeNode
• reset_linewidth() : AP_tree
• reset_phasing_cb() : FINAL_TYPE< SEQTYPE >
• reset_required_baseCount() : FilteredExport
• reset_scrolled_picture_size() : AW_window
• reset_style() : AW_common , AW_GC_set , AW_stylable
• reset_subtree_angles() : AP_tree
• reset_subtree_layout() : AP_tree
• reset_subtree_linewidths() : AP_tree
• reset_subtree_spreads() : AP_tree
• reset_to_default() : AW_awar
• resize() : cache::Cache< SMARTPTR > , CharPtrArray , ED4_update_info , Refs< REF >
• resize_all_requesting_childs() : ED4_root
• resize_dynamic() : ED4_base
• resize_refs() : RefContainer< REF >
• resize_requested_by_child() : ED4_manager
• resize_requested_by_link() : ED4_base
• resize_requested_children() : ED4_base , ED4_manager , ED4_root_group_manager , ED4_terminal , FINAL_TYPE< SEQTYPE >
• resizeCallback : GLwDrawingAreaPart
• resized() : PH_display
• resolve_pointer_to_char_pntr() : ED4_base , ED4_terminal
• resolve_pointer_to_string_copy() : ED4_base , ED4_terminal
• resort : GB_DICTIONARY
• ResourceStack() : ResourceStack
• ResourceStack::destroy_edges : AP_tree_edge , FINAL_TYPE< SEQTYPE >
• ResourceStack::destroy_nodes : FINAL_TYPE< SEQTYPE >
• rest : FeatureLine , StringParser
• rest_tree_has_marks() : AWT_graphic_tree
• restart() : AW_size_tracker , EdgeChain , SequenceIterator
• restart_tracking() : AW_device_size
• restLength() : SizedBufferPtr< T >
• restore() : AngleBuffer , AW_at_auto , AW_at_maxsize , AW_at_size , AW_at_storage
• Restore() : AWT_configuration
• restore() : FINAL_TYPE< SEQTYPE >
• restore_all() : ClustersData
• restore_at_from() : AW_window
• restore_nondestructive() : FINAL_TYPE< SEQTYPE >
• restore_pos() : PS_FileBuffer
• restoreAll() : AngleBuffer
• restored : GroupChanges
• restoreDots() : AlignBuffer
• restrict_2_region() : FamilyFinder
• restriction_level : ED4_objspec
• restrictMatchesToRegion() : PT_Traversal
• result : arb_test::StaticCode , ArbMatchResult , GB_DbScanner , remote_awars
• result_pos_fig : QUERY::query_spec
• result_probes : awar_vars
• result_probes_comment : awar_vars
• resultMap() : FINAL_TYPE< SEQTYPE >
• results() : ED4_sequence_terminal , HelixAlignmentQuality
• results2string() : PT_FamilyFinder
• resultSetMap() : ArbMatchResultsManager
• resultsFileName() : ArbMatchResultsManager
• resultsMap() : ArbMatchResultsManager
• ResultType : Function< RT, P1, P2, P3 > , IfThenElseType< false, T, F > , IfThenElseType< true, T, F >
• retrieve() : AP_pos_var
• retrieve_marker_state() : FINAL_TYPE< SEQTYPE > , MarkerDisplay , ProbeCollDisplay
• reuse() : InfoWindow , RootAsWindowCallback
• rev_width() : format_props
• revcomp() : LocationEditor
• revcomp_op() : revcomp_op
• reverse() : AW::LineVector , customCriterion , import_match , SearchAwarList
• reverse_iterator : RangeList
• reverse_mix() : FINAL_TYPE< SEQTYPE > , NoTuple , ValueTuple
• reverse_order() : KeySorter
• reversed : probe_struct_global
• revert() : AP_main
• revert_if() : AP_main
• revert_resources() : NodeStack , StackFrameData
• revert_user_state() : AP_main
• revert_will_produce_valid_tree() : AP_main
• revertToPreviousState() : FINAL_TYPE< SEQTYPE >
• rewind() : BufferedFileReader , FormatReader , MackeReader , Reader , SimpleFormatReader
• rewrite_as() : AW_awar
• rewrite_as_string() : AW_awar
• rewrite_float() : AW_awar
• rewrite_int() : AW_awar
• rewrite_pointer() : AW_awar
• rewrite_string() : AW_awar
• rgb() : AW_hsv , Spoolable , SpoolableColor , SpoolableString
• rgb2index() : ColorMap
• rgb_e4 : ColorGroupDef
• rgb_nt : ColorGroupDef
• rgba : GLwDrawingAreaPart
• rgbValue() : ColorGroupDef
• right() : AW::Rectangle , AW_font_overlap , ED4_scrolled_rectangle , UnitPair
• right_angle : AP_tree_members
• right_edge() : AW::Rectangle
• right_gap() : SeqPart
• right_linewidth : AP_tree_members
• rightAttachAbspos() : FINAL_TYPE< SEQTYPE >
• rightAttachPoint() : FINAL_TYPE< SEQTYPE >
• rightlen : NodeState , TreeNode
• rightOf() : SequencePosition
• rightson : NodeState , TreeNode
• rightward : ED4_work_info
• rmatrix : NA_Sequence
• rna : FINAL_TYPE< SEQTYPE >
• RNA3D_Global() : RNA3D_Global
• RNA3D_Graphics() : RNA3D_Graphics
• rna_or_dna : FINAL_TYPE< SEQTYPE >
• root : AW_awar , AW_window
• Root() : GEN_gene
• root : NodeState
• ROOT : PHDATA
• root : RNA3D_Global
• root_at_create : NodeStack
• root_container : GB_MAIN_TYPE
• root_distance() : TreeNode
• root_group_man : ED4_root
• root_node() : PARSIMONY_testenv< SEQTYPE >
• root_pushed : StackFrameData
• rooted : tree
• rootsideLoop() : FINAL_TYPE< SEQTYPE >
• RootSynchronizer() : RootSynchronizer
• rotate() : AW_zoomable
• rotate135deg() : AW::Vector
• rotate180deg() : AW::Angle , AW::Vector
• rotate225deg() : AW::Vector
• rotate270deg() : AW::Angle , AW::Vector
• rotate315deg() : AW::Vector
• rotate45deg() : AW::Vector
• rotate90deg() : AW::Angle , AW::Vector
• rotate_subtree() : TreeNode
• ROTATION_SPEED : RNA3D_Global
• route_down_hierarchy() : ED4_base , ED4_manager
• rshift() : Bitvector
• RSpecSet() : RSpecSet
• rtransform() : AW_zoomable
• rtransform_pixelsize() : AW_zoomable
• rtransform_size() : AW_zoomable
• Rule() : FieldTransfer::Rule
• ruler_awar() : AWT_graphic_tree
• RulerScaler() : RulerScaler
• RuleSet() : FieldTransfer::RuleSet
• run() : Aligner , PrimerDesign
• Run() : UserlandCheck
• run_callbacks() : AW_awar , AW_cb
• run_cb() : ED4_seq_colors
• run_expose_callback() : AW_area_management
• run_focus_callback() : AW_window
• run_popup_callbacks() : AW_window
• run_resize_callback() : AW_area_management
• run_search() : GroupUIdata
• runDir : Globals
• running : gb_callback
• running_client_transaction : gb_local_data
• running_on_valgrind : Globals