Here is a list of all class members with links to the classes they belong to:
- o -
- oacc
: olist
- object
: ED4_highlighted_entry
, ED4_move_info
- ObjectSize
: FINAL_TYPE< SEQTYPE >
- oblnk
: olist
- obuf
: aisc_static_set_mem
- occurrence()
: ProbeIterator
- occursInBothTrees()
: SpeciesInTwoTrees
- oerr
: olist
- of()
: arb_test::FINAL_TYPE< T >
, PrefixProbabilities
- of_range()
: PrefixProbabilities
- off_x
: ED4_dragNdrop_info
- off_y
: ED4_dragNdrop_info
- offset()
: AlignBuffer
, BufferPtr< T >
, FastAlignInsertion
, FastSearchOccurrence
, gbdata_offset
, gene_part_pos
, Item
, MarkerXPos
, NA_Sequence
, Node
, TripleOffset
- offsets
: GB_DICTIONARY
- ofgroup()
: arb_test::FINAL_TYPE< T >
- ofm
: olist
- ofnm
: olist
- ofnmlen
: olist
- ok()
: BaseFrequencies
, CharPtrArray
, FileWriter
, GB_transaction
, GcgCommentWriter
, Reader
, Writer
- ok_for_next_gen()
: probe_combi_statistic
- ok_to_ignore_wrong_start_codon
: ImportSession
- old
: gb_db_extended
, gb_triggered_callback
, trf_struct
- old_cursor_display
: AW_root_Motif
- old_cursor_window
: AW_root_Motif
- old_event_y
: ED4_dragNdrop_info
- old_hor_scroll_pos
: AWT_canvas
- old_sigpipe_handler
: aisc_com
- old_value()
: LocallyModify< T >
- old_vert_scroll_pos
: AWT_canvas
- old_x
: ED4_dragNdrop_info
, ED4_scroll_picture
- old_y
: ED4_dragNdrop_info
, ED4_scroll_picture
- older_than()
: timestamp
- oldest_entry
: gb_cache
- Oligo()
: Oligo
- oligo_cmp_abs()
: oligo_cmp_abs
- oligo_cmp_rel()
: oligo_cmp_rel
- oligo_comparator()
: oligo_comparator
- OligoRegistry()
: OligoRegistry
- on_hide()
: AW_window
- one
: Pair
- one_false_IDs
: PS_Candidate
- one_false_IDs_matches
: PS_Candidate
- one_key_cnt
: arb_prm_struct
- onePixel
: IRS_data
- only_show_diff_for()
: ED4_reference
- open()
: ALI_ARBDB
, AP_main
, BasicStatus
, FINAL_TYPE< SEQTYPE >
, PH_root
, XML_Comment
, XML_Node
, XML_Text
- open_db_for_merge()
: SelectedDatabase
- open_dbs()
: gb_local_data
, merge_scheme
- open_global_shell()
: GB_test_shell_closed
- open_parser_pos_fig
: QUERY::query_spec
- Opened()
: XML_Node
- opened
: XML_Node
- openFolded
: SearchAwarList
- OpenGLEngineState
: RNA3D_Global
- OpenGLGraphics()
: FINAL_TYPE< SEQTYPE >
- openGroupExtra
: IRS_data
- openResultsFile()
: ArbMatchResultsManager
- openstatus
: arb_status_implementation
- opentype
: GB_MAIN_TYPE
- openXML()
: ArbProbeCollection
- operate()
: case_op
, ED4_block_operator
, replace_op
, revcomp_op
, shift_op
, unalign_op
- operate_on_mem()
: AliData
, AliDataSlice
, FINAL_TYPE< SEQTYPE >
, LazyAliData
, SpecificAliData< T >
, SpecificGap< T >
- operation
: ali_aligner_dellist_elem
, ali_pathmap_up_pointer
- operator B *()
: ARB_type_traits::Host< B, D >
- operator bool()
: ARB_ERROR
, AW_selection_list_iterator
, ChainIteratorStage1
, ChainIteratorStage2
, EdgeChain
, FailedAt
, LazyPersistantFlag
, PersistantFlag
, SEC_base_iterator
, SEC_base_part_iterator
, SEC_segment_iterator
, SEC_strand_const_iterator
, SEC_strand_iterator
, Validity
, var_ref
- operator char()
: softbase
- operator char *()
: GBENTRY_memory
- operator const char *()
: arb_test::copy< const char * >
, SizedCstr
- operator const string &()
: Ostring
- operator const T &()
: arb_test::copy< T >
- operator const T *()
: BufferPtr< T >
- operator D *()
: ARB_type_traits::Host< B, D >
- operator string &()
: Ostring
- operator T()
: ConsumeUDC< T, convert_possible >
, Lazy< T, UNDEFINED >
, LazyFloat< T >
- operator T *()
: BufferPtr< T >
, RefPtr< T >
- operator unsigned()
: timestamp
- operator!()
: SetOnce
- operator!=()
: ARB_edge
, AW_rgb16
, AW_scalar
, ClickedElement
, Group
, Location
, PosRange
- operator()()
: arb_test::containing
, arb_test::epsilon_similar
, BadPositionsOrder
, BoundWindowCallback
, Callback_FFV< RT, F1, F2 >
, Callback_FVF< RT, F1, F2 >
, Callback_FVV< RT, FIXED >
, Callback_VV< RT >
, charpLess
, cmp_candidates
, cmp_Rectangles
, ColorMap
, compare_by_criteria
, CompareAlpha
, CompareByLength
, equals< T >
, has_been_deleted
, has_id
, HasLevelSmallerThan
, hasSequence
, hasType
, isAbove< T >
, isBelow< T >
, IsCallback
, IsSpecificCallback
, IsSpecificHierarchyCallback
, less_DistinctPosRange
, lt_field
, lt_probe
, ltByArbName
, ltByInternalName
, ltNonOverlap
, nameOrder
, NoCaseCmp
, NodeInsertOrder
, Not
, oligo_cmp_abs
, oligo_cmp_rel
, oligo_comparator
, PO_Less
, PT_dump_loc
, PT_Traversal
, ptnd_chain_count_mishits
, SCP_Less
, ShallBeDeleted
, SortClusterIDsBy
, startsWithBlanks
, StrictlyTypedCallback< RT, P1, P2, P3 >
, TypedDatabaseCallback
, was_modified
- operator*()
: EdgeChain
, RefPtr< T >
, SEC_base_iterator
, SEC_base_part_iterator
, SEC_segment_iterator
, SEC_strand_const_iterator
, SEC_strand_iterator
, SmartPtr< T, C >
, Vector3
- operator*=()
: AW::Angle
, AW::Vector
, ST_base_vector
- operator+()
: Vector3
- operator++()
: arb_progress
, AW_selection_list_iterator
, BufferPtr< T >
, ChainIteratorStage1
, ChainIteratorStage2
, EdgeChain
, Location
, PrefixIterator
, Reader
, SEC_base_iterator
, SEC_base_part_iterator
, SEC_segment_iterator
, SEC_strand_const_iterator
, SEC_strand_iterator
, SequencePosition
- operator+=()
: AW::Angle
, AW::Position
, AW::Vector
, Codon_Group
, Int< I >
, SequencePosition
, ValueCounter< T >
- operator-()
: AW::Angle
, AW::Vector
, Vector3
- operator--()
: BufferPtr< T >
, SequencePosition
- operator-=()
: AW::Angle
, AW::Position
, AW::Vector
, SequencePosition
- operator->()
: RefPtr< T >
, SEC_base_iterator
, SEC_base_part_iterator
, SEC_segment_iterator
, SEC_strand_const_iterator
, SEC_strand_iterator
, SmartPtr< T, C >
- operator/()
: Vector3
- operator/=()
: AW::Vector
- operator<()
: Callback_FFV< RT, F1, F2 >
, Callback_FVF< RT, F1, F2 >
, Callback_FVV< RT, FIXED >
, Callback_VV< RT >
, CallbackData< P1, P2 >
, Candidate
, ConfigDefinition
, GEN_gene
, indexed_name
, LeafRelation
, SequencePosition
, StrictlyTypedCallback< RT, P1, P2, P3 >
, TwoLeafs
- operator<<
: AP_tree_edge
, FINAL_TYPE< SEQTYPE >
- operator=()
: ARB_ERROR
, arb_test::str
, ArbMatchResult
, ArbProbeCollection
, ArbProbeMatchWeighting
, AW::Angle
, FINAL_TYPE< SEQTYPE >
, gene_struct
, Int< I >
, Lazy< T, UNDEFINED >
, LazyFloat< T >
, LazyPersistantFlag
, Location
, PersistantFlag
, SmartPtr< T, C >
, SQ_GroupData
, SQ_GroupData_Impl< I >
, SQ_GroupData_RNA
, Validity
- operator==()
: ARB_edge
, AW_clicked_box
, AW_clicked_element
, AW_clicked_line
, AW_clicked_text
, AW_GC_config
, AW_rgb16
, AW_scalar
, Callback_FFV< RT, F1, F2 >
, Callback_FVF< RT, F1, F2 >
, Callback_FVV< RT, FIXED >
, Callback_VV< RT >
, CallbackData< P1, P2 >
, ClickedElement
, ColorRGBf
, FINAL_TYPE< SEQTYPE >
, FoundGroup
, gb_hierarchy_location
, Group
, Location
, PosRange
, StrictlyTypedCallback< RT, P1, P2, P3 >
- operator>()
: FailedAt
, SequencePosition
- operator[]()
: BufferPtr< T >
, CharPtrArray
, chartable::SepBaseFreq
, CompactedSequence
, CompactedSubSequence
, Distributor
, QueriedGroups
, ReadableDataLoc
, Tab
- opposite_position()
: BI_helix
- opt_level
: tree
- optimize()
: ali_aligner_dellist
, ALI_PATHMAP
, DecisionTree
- optimize_space()
: CharPtrArray
- optimize_tree()
: ArbParsimony
- option_menu_list
: AW_root_Motif
- option_menu_number
: AW_option_menu_struct
- OptiPerfMeter()
: OptiPerfMeter
- order
: hits_sort_params
- order_index
: TreeOrderedSpecies
- organism
: FINAL_TYPE< SEQTYPE >
- OrganismName()
: GEN_root
- orginf
: RDP_comments
- OrgInfo()
: OrgInfo
- orgLine
: FeatureLine
- orientation
: Subinfo
- orientationChanged()
: FINAL_TYPE< SEQTYPE >
, SEC_base
- origin
: softbase
, TimeStamp
- orl
: olist
- os
: FINAL_TYPE< SEQTYPE >
- osta
: olist
- Ostring()
: Ostring
- other()
: ARB_edge
, BaseCounts
- otherLoop()
: FINAL_TYPE< SEQTYPE >
- otherNode()
: AP_tree_edge
- others
: RDP_comments
- ounit
: olist
- out
: arb_prm_struct
, FileWriter
- Out()
: FINAL_TYPE< SEQTYPE >
- out()
: GcgCommentWriter
, Seq
, Writer
- out_seq_position
: ED4_work_info
- out_string
: ED4_work_info
- outf()
: FileWriter
, Writer
- OutgroupMatcher()
: OutgroupMatcher
- outname
: arb_prm_struct
- output
: GBL_command_arguments
, GmenuItem
- Output()
: Output
- output()
: output
- outside_group()
: probe_input_data
- outside_mismatches_difference
: awar_vars
- outsideLoop()
: FINAL_TYPE< SEQTYPE >
- overall_duration_ms()
: SimpleTester
- overall_range_count()
: ColumnQualityInfo
- overlap_is_folded()
: FoundGroup
- overlaps_with()
: AW::Rectangle
, PART
- overlapsWith()
: PositionPair
- overlay_color_groups()
: ItemShader
, ShaderPlugin
- overlay_marked()
: ItemShader
, ShaderPlugin
- OVERRIDE_SEQ_ACCESSORS()
: FINAL_TYPE< SEQTYPE >
- overwrite_element()
: ALI_TLIST< T >
- overwritten
: GroupChanges
- own_or_terminate()
: Mutex
- owned()
: Mutex
- owned_by()
: ArbProgress::counter
- ownedBy
: ArbProgress::counter
- owner()
: ED4_container
, xarray
- owner_of_cursor
: ED4_cursor
- owns()
: ArbProgress::nestable