Here is a list of all class members with links to the classes they belong to:

- d -

• d : ali_prealigner_cell , g_b_undo_entry , GBCONTAINER , Multitype
• d1 : ali_aligner_cell , ali_aligner_last_cell
• d2 : ali_aligner_cell , ali_aligner_last_cell
• d3 : ali_aligner_cell , ali_aligner_last_cell
• d_callback() : AW_window
• dangling() : MatchingOligo
• dangling_char() : MatchingOligo
• data : aisc_bytes_list , aisc_hash_node , arb_prm_struct , awt_input_handler , bytestring
• Data() : Data
• data : Data , DB_scalable , DictData , FINAL_TYPE< SEQTYPE > , gb_cache_entry , gb_extern_data2 , GB_INTern2 , GB_INTern , GB_INTern_strings2 , GB_INTern_strings , GBENTRY , gbm_table , gbt_renamed , MutationsPerSite
• Data : pngRawInfo
• data : probe_struct_global , PS_BitMap , PS_BitSet , SEC_seq_data , SeqPart
• data_changed_cb() : ED4_reference
• data_count : probe_struct_global
• DataLoc() : DataLoc
• datapath : scan_db_insert
• date : FINAL_TYPE< SEQTYPE >
• date_of_quick_file : gb_scandir
• datec : FINAL_TYPE< SEQTYPE >
• dates : GB_MAIN_TYPE
• dateu : FINAL_TYPE< SEQTYPE >
• db2awar() : awt_check_box , awt_radio_button , awt_string_handler
• db_changed() : awt_linked_to_item , awt_string_handler , FINAL_TYPE< SEQTYPE >
• db_interrupt_data() : db_interrupt_data
• db_name : ED4_root
• DB_scalable() : DB_scalable
• db_server : ALI_GLOBAL , arb_params
• db_type : known_enum
• db_writer : Importer
• DBerror() : DBerror
• dbname : parameters
• DbQuery() : QUERY::DbQuery
• dbsavename : parameters
• DBwriter() : DBwriter
• dd : ARB_TIME , TimeStamp
• deactivate_plugin() : ItemShader
• dealloc : CallbackData< P1, P2 >
• debug_asserter() : arb_test::debug_asserter
• debug_expectations() : arb_test::debug_asserter
• debug_get_current() : MO_Liste
• dec_long() : chartable::SepBaseFreq
• dec_short() : chartable::SepBaseFreq
• DecisionTree() : DecisionTree
• DECLARE_ASSIGNMENT_OPERATOR() : AlignDataAccess , AliView , AP_filter , AP_weights , ARB_edge , arb_test::FINAL_TYPE< T > , arb_test::match_expectation , arb_test::predicate_description , AW_scalar , ClickedElement , Code , CompactedSubSequence , Convaln_exception , customCriterion , Distributor , ED4_SearchPosition , Emblref , ExplicitRange , FINAL_TYPE< SEQTYPE > , gb_callback , gb_triggered_callback , GenbankRef , GroupCluster , MarkedPrefixes , PaintedNode , PartialSequence , Partition , PlugIn , PrefixIterator , PrefixProbabilities , Range , RefPtr< T > , remote_awars , SequencePosition , StaticData , ValueCounter< T >
• DECLARE_DUMP_FOR_BASECLASS() : ED4_abstract_group_manager , ED4_abstract_sequence_terminal , ED4_manager , ED4_terminal , ED4_text_terminal
• DECLARE_DUMP_FOR_LEAFCLASS() : ED4_area_manager , ED4_bracket_terminal , ED4_consensus_sequence_terminal , ED4_device_manager , ED4_group_manager , ED4_line_terminal , ED4_multi_name_manager , ED4_multi_sequence_manager , ED4_multi_species_manager , ED4_name_manager , ED4_orf_terminal , ED4_root_group_manager , ED4_sequence_manager , FINAL_TYPE< SEQTYPE >
• DECLARE_DUMP_FOR_MIDCLASS() : ED4_sequence_terminal
• DECLARE_DUMP_FOR_ROOTCLASS() : ED4_base
• decode : S_cfgLine
• decode_escapes() : ConfigMapping
• deconstruct_all_trees() : RootSynchronizer
• deconstruct_weighted() : DeconstructedTree
• DeconstructedTree() : DeconstructedTree
• deconstructionPhase() : RootSynchronizer
• decreasePasses() : PS_Candidate
• deduceTranslations() : FINAL_TYPE< SEQTYPE >
• deep_copy() : SmartPtr< T, C >
• def_2alignment : adfiltercbstruct
• def_2filter : adfiltercbstruct
• def_2name : adfiltercbstruct
• def_alignment : adfiltercbstruct
• def_cancel : adfiltercbstruct
• def_dest : adfiltercbstruct
• def_filter : adfiltercbstruct
• def_len : adfiltercbstruct
• def_max : adfiltercbstruct
• def_min : adfiltercbstruct
• def_name : adfiltercbstruct
• def_simplify : adfiltercbstruct
• def_source : adfiltercbstruct
• def_subname : adfiltercbstruct
• default_choice : AW_option_menu_struct
• default_file : ALI_GLOBAL , arb_params
• default_is_selected() : AW_selection_list
• default_select : AW_selection_list
• default_select_display() : AW_subset_selection
• default_select_value() : AW_subset_selection
• default_toggle : AW_toggle_field_struct , awt_radio_button
• defaultColorgroupName() : ColorGroupDef
• defaultVal : S_cfgLine
• define() : ED4_reference , LinePart
• define_canvas_index() : CanvasRef
• define_dependency() : ScrollSynchronizer
• DEFINE_DOWNCAST_ACCESSORS() : FINAL_TYPE< SEQTYPE >
• DEFINE_READ_ACCESSORS() : AP_main , ArbParsimony , TreeNode , TreeRoot
• define_remote_command() : AW_root
• DEFINE_TREE_ACCESSORS() : AP_tree , ARB_countedTree , ARB_seqtree , FINAL_TYPE< SEQTYPE >
• DEFINE_TREE_RELATIVES_ACCESSORS() : FINAL_TYPE< SEQTYPE >
• DEFINE_TREE_ROOT_ACCESSORS() : AP_tree_root , ARB_seqtree_root , FINAL_TYPE< SEQTYPE >
• defined() : MatrixOrder , TextRef
• defined_at() : HeaderList , import_match
• DefinedCommands() : DefinedCommands
• defineParentOf() : ParentCache
• definition : FINAL_TYPE< SEQTYPE >
• deg2rad : AW::Angle
• degap : prettyopts
• degrees() : AW::Angle
• del_first : gb_server_data
• del_last : gb_server_data
• del_unwanted_entries() : EntryRemover
• delay_changed_callbacks() : AW_gc_manager
• DelayReshade() : DelayReshade , ItemShader
• delbit() : Bitvector
• Deletable() : Deletable
• Delete() : ED4_base , ED4_manager , ED4_terminal
• delete_aliEntry_from_SAI() : AP_pos_var
• delete_by_node() : TreeRoot
• delete_default() : AW_selection_list
• delete_element() : ALI_TLIST< T >
• delete_element_at() : AW_selection_list
• delete_entries_missing_in_parent() : AW_subset_selection
• delete_entry() : AWT_config , ConfigMapping
• delete_expensive() : ali_prealigner_mask
• delete_family_list() : FamilyFinder
• delete_folding_line() : ED4_foldable
• delete_found_groups() : GroupSearch
• delete_from_DB() : FoundGroup
• delete_group() : GroupSearch
• delete_listed_groups() : GroupUIdata
• delete_map() : ALI_SUB_SOLUTION
• delete_member() : ED4_folding_line
• delete_pointer_2() : FINAL_TYPE< SEQTYPE >
• delete_requested : ED4_update_info
• delete_requested_by_child() : ED4_manager
• delete_requested_children() : ED4_base , ED4_manager , ED4_multi_species_manager , ED4_terminal
• delete_selected_field() : AWT_configuration
• delete_selected_group() : GroupUIdata
• delete_value() : AW_selection_list
• delete_window() : ED4_window
• deleted() : DiffLines , ED4_terminal , GroupChanges
• deleted_from_database() : ED4_base , ED4_manager , ED4_sequence_terminal , ED4_terminal , ED4_text_terminal
• DeleteOldInsertionData() : Structure3D
• DeleteOldMoleculeData() : Structure3D
• DeleteOldSpeciesData() : Structure3D
• deleteStaticData() : DBwriter
• DeleteWhat : Deletable
• deliver() : ARB_ERROR
• deliverCluster() : Clusterer
• delivered : SequenceIterator
• deliverRest() : Clusterer
• deny_read : AW_awar
• deny_write : AW_awar
• dependent() : arb_test::expectation_group
• depth : DepthMarker , KL_Settings
• Depth : pngInfo , pngRawInfo
• depth : PS_Candidate
• DepthMarker() : DepthMarker
• depths : DepthMarker
• depths_marked : DepthMarker
• depthSize : GLwDrawingAreaPart
• descent : AW_font_limits , AWT_scaled_font_limits
• Desco() : validNames::Desco
• describe() : arb_test::predicate< FUNC > , FieldTransfer::ReadRule , FieldTransfer::WriteRule
• description : _xfstruct , AWT_predefined_config , ColorGroupDef , export_format , FINAL_TYPE< SEQTYPE > , import_format , NA_Alignment , NA_Sequence , S_cfgLine , SEQIO::ExportFormatInfo
• deselect_all() : ED4_root
• deselect_all_species_and_SAI() : ED4_multi_species_manager
• deselect_group() : AWT_graphic_tree
• DESIGNCLIPOUTPUT : Params
• DESIGNMAXPROBELEN : Params
• DESIGNNAMES : Params
• DESIGNPROBELEN : Params
• DESIGNSEQUENCE : Params
• DesignTargets() : DesignTargets
• dest() : ARB_edge , trf_dest_struct
• dest_element() : DragNDrop
• destroy() : AP_tree_edge , TreeNode
• destroy_callback : Socinf
• destroy_clientdata : Socinf
• destroy_edges() : ResourceStack
• destroy_extended() : GBDATA
• destroy_folding_lines() : ED4_scrolled_rectangle
• destroy_nodes() : ResourceStack
• destroy_probe_eval() : MP_Main
• destroyEdge() : AP_main , StackFrameData
• destroyNode() : AP_main , AP_tree_root , CompressionRoot , FINAL_TYPE< SEQTYPE > , SimpleRoot , SizeAwareRoot , StackFrameData , TreeRoot
• dests : trf_struct
• detach_selected_item() : InfoWindow
• detached_uppopper : InfoWindow
• detect() : GetMatchesContext
• detect_clusters() : FINAL_TYPE< SEQTYPE >
• detect_format() : ArbImporter
• detect_group_state() : AWT_graphic_tree
• detect_transformation() : DI_MATRIX
• detectAvailableFields() : ArbImporter
• detectVerticalGaps() : export_sequence_data
• deviation : consensus_result
• device : MatrixDisplay
• DI_ENTRY() : DI_ENTRY
• DI_GLOBAL_MATRIX() : DI_GLOBAL_MATRIX
• DI_MATRIX() : DI_MATRIX
• di_protdist() : di_protdist
• diagonal() : AW::Rectangle
• diamond() : AWT_graphic_tree
• Dict() : Dict
• dictionary : gb_Key
• didMatch() : RegMatch
• diff : arb_test::group_match
• diff_from_average : SQ_weights
• diffC : diff_params
• differs() : PART
• differs_from() : AliData
• difflineMode() : difflineMode
• DiffLines() : DiffLines
• dimension_awar() : ShaderPlugin
• dims : Vardesc
• disable : AutoMatchSettings , AW_click_cd
• disable_callbacks : AW_root
• disabled_path : GB_MAIN_TYPE
• disconnect() : NameServerConnection
• disjunct_from() : PART
• dislocate() : Group
• dislocate_selected_group() : AWT_graphic_tree
• disp_device : FINAL_TYPE< SEQTYPE > , GEN_graphic
• display : AW_root_Motif , PH_display
• display_node_remark() : BootstrapConfig
• display_params() : SEC_root
• display_remark() : BootstrapConfig
• display_sai : SEC_displayParams
• display_search : SEC_displayParams
• display_selected_item() : InfoWindow
• DisplayBasePositions() : FINAL_TYPE< SEQTYPE >
• displayed() : PH_display
• DisplayFormat() : DisplayFormat
• displayGrid : FINAL_TYPE< SEQTYPE >
• DisplayHelices() : FINAL_TYPE< SEQTYPE >
• DisplayHelixBackBone() : FINAL_TYPE< SEQTYPE >
• DisplayHelixMidPoints() : FINAL_TYPE< SEQTYPE >
• DisplayHelixNumbers() : FINAL_TYPE< SEQTYPE >
• DisplayMappedSpBasePositions() : FINAL_TYPE< SEQTYPE >
• DisplayMappedSpInsertions() : FINAL_TYPE< SEQTYPE >
• DisplayMolecule() : FINAL_TYPE< SEQTYPE >
• DisplayMoleculeMask() : FINAL_TYPE< SEQTYPE >
• DisplayMoleculeName() : FINAL_TYPE< SEQTYPE >
• displayName() : ArbProbe
• dist : DepthMarker
• distance : PS_Candidate
• distance_between_strands : SEC_displayParams
• distance_to_tree_center() : PART
• distances : DepthMarker
• distances_marked : DepthMarker
• distanceSum() : Multiroot
• distanceTo() : PART
• distanceToCenterSum() : Multiroot
• distinct_from() : AW::Rectangle
• distribute_children() : ED4_manager
• Distributor() : Distributor
• dkeys : GEN_NodeTextBuilder
• dl : Socinf
• dna_at() : FailedAt
• DNA_Table() : DNA_Table
• do_accept_missing_data() : FilteredExport
• do_align() : FINAL_TYPE< SEQTYPE >
• do_auto_increment : AW_at
• do_auto_space : AW_at
• do_callbacks() : FINAL_TYPE< SEQTYPE >
• do_delete_pos_fig : QUERY::query_spec
• do_drag() : Dragged
• do_drop() : Dragged
• do_lazy_load() : AP_sequence
• do_mark_nt_pos_fig : QUERY::query_spec
• do_mark_pos_fig : QUERY::query_spec
• do_postcalc_callback() : ST_ML
• do_query_pos_fig : QUERY::query_spec
• do_refresh : AlignDataAccess
• do_refresh_pos_fig : QUERY::query_spec
• do_reserve() : PS_BitMap
• do_scale() : BranchLinewidthScaler
• do_set_pos_fig : QUERY::query_spec
• do_unmark_nt_pos_fig : QUERY::query_spec
• do_unmark_pos_fig : QUERY::query_spec
• does_bootstrap() : AP_filter
• does_exist() : AW_clicked_element
• does_shade() : AP_TreeShader
• doesMatch() : GroupPenalty
• doesRemap() : MG_remaps
• DoHelixMapping() : FINAL_TYPE< SEQTYPE >
• domainLength() : MatchingOligo
• domainPossible() : MatchingOligo
• domainSeen() : MatchingOligo
• domatch : prettyopts
• done() : arb_progress , ArbProgress::counter , ArbProgress::nestable , ExecutingMacro , FINAL_TYPE< SEQTYPE > , null_counter , Partition , PrefixIterator , ReadSeqVars
• dont_bind_rest() : MatchingOligo
• dont_close() : BufferedPipeReader
• dont_save_awars_with_default_value() : AW_root
• dont_scroll : AWT_graphic_exports
• dont_suppress() : SuppressOutput
• Dots() : Dots
• dots_inserted : dot_insert_stat
• DOUBLE : binop_pair
• doublebuffer : GLwDrawingAreaPart
• down : score
• dpi_scale : AW_xfig
• dr : FINAL_TYPE< SEQTYPE >
• drag : AWT_canvas
• drag_gc : AWT_graphic
• drag_target_detection() : AWT_graphic
• DragAction : Dragged
• Dragged() : Dragged
• dragged : FINAL_TYPE< SEQTYPE >
• DRAGGING : Dragged
• DragNDrop() : DragNDrop
• draw() : ED4_bracket_terminal , ED4_CursorShape , ED4_line_terminal , ED4_terminal , ED4_text_terminal , FINAL_TYPE< SEQTYPE >
• draw_bb() : ED4_base
• draw_branch_line() : AWT_graphic_tree
• draw_drag_box() : ED4_terminal
• draw_drag_indicator() : Dragged , DragNDrop , FINAL_TYPE< SEQTYPE > , Scaler
• draw_line() : AW_window
• draw_scale_indicator() : BranchLinewidthScaler
• draw_separator : IRS_data
• draw_text() : FINAL_TYPE< SEQTYPE >
• draw_top_separator_once() : IRS_data
• DrawBox() : FINAL_TYPE< SEQTYPE >
• drawn : StrandPositionData
• drawn_after() : SEC_drawn_positions
• drawn_at() : SEC_drawn_positions
• drawn_at_or_after() : SEC_drawn_positions
• drawn_before() : SEC_drawn_positions
• drawnSize() : SEC_constrainted
• drop() : ExecutingMacro
• DROPPED : Dragged
• dst : merge_scheme
• dt : dt_bondssum
• dt_bondssum() : dt_bondssum
• dummy : PersistentNameServerConnection
• dummy_father : GB_MAIN_TYPE
• dump() : arb_progress , arb_test::group_match , ArbProgress::counter , ArbProgress::nestable , BackTraceInfo , FastAlignInsertion , FastAlignReport , InsertPerfMeter , OptiPerfMeter
• DUMP : Params
• dump() : PartialSequence , ProbeIterator , PT_statistic
• dump_at_position() : AW_window
• dump_brief_description() : arb_test::expectation , arb_test::expectation_group , arb_test::FINAL_TYPE< T > , arb_test::match_expectation , arb_test::matcher , arb_test::value_matcher< T >
• dump_cursor_pos() : Data
• dump_error() : ModRLimit
• dump_expectation() : arb_test::FINAL_TYPE< T > , arb_test::matcher , arb_test::value_matcher< T >
• dump_num_of() : arb_test::group_match
• dump_some_expectations() : arb_test::expectation_group
• dump_to() : MemDump
• dumpAll() : FastAlignInsertion
• dumpCustom() : InsertPerfMeter , OptiPerfMeter
• dup() : AP_combinableSeq , AP_sequence , AP_sequence_simple_protein , FINAL_TYPE< SEQTYPE > , MostLikelySeq
• dup_corresponding_part() : PosRange
• DupCriteria() : DupCriteria
• duplicate() : probe_combi_statistic , probe_tabs
• duplicate_list() : List< Type >
• DuplicateLinkFilter() : DuplicateLinkFilter
• duplicates : link_tree_data
• duplicateSpecies : EG2PS_data
• DupNameCriterion() : DupNameCriterion
• Dynamic : KL_Settings
• dynamic_prop : ED4_base