December 2007 Commit Log

Number of Commits:

48

Number of Active Developers:

4

baderk 2007-12-19 12:13 #48 Rev.: 5011

Reformat only (tabs,indention,...) - no code change

254 lines of code changed in 6 files:

• STAT: ST_ml.cxx (+105 -168), ST_quality.cxx (+37 -68), ST_window.cxx (+30 -51), st_ml.hxx (+63 -58), st_quality.hxx (+10 -11), st_window.hxx (+9 -18)

baderk 2007-12-19 11:51 #47 Rev.: 5010

Fixed warnings in structs.

2 lines of code changed in 1 file:

• WINDOW: AW_status.cxx (+2 -2)

baderk 2007-12-19 11:26 #46 Rev.: 5009

Fixed warnings.
Fixed '0' -> 'NULL'.

7 lines of code changed in 2 files:

• WINDOW: AW_device.cxx (+1 -1), AW_window.cxx (+6 -6)

baderk 2007-12-18 16:05 #45 Rev.: 5008

Added alignment function for windows: positions small dialogs about top/center of the screen.

17 lines of code changed in 3 files:

• WINDOW: AW_status.cxx (+1), AW_window.cxx (+14), aw_window.hxx (+2 -1)

baderk 2007-12-18 15:10 #44 Rev.: 5007

reformat only (tabs,indention,...) - no code change

1861 lines of code changed in 1 file:

• WINDOW: AW_window.cxx (+1861 -1842)

baderk 2007-12-18 14:21 #43 Rev.: 5006

Changed ARB logo (from bitmap to pixmap with antialiasing)

93 lines of code changed in 3 files:

• NTREE: NT_main.cxx (+1 -1)
• SEER: SEER_main.cxx (+1 -1)
• lib/pixmaps: logo.xpm (new 91)

baderk 2007-12-18 14:12 #42 Rev.: 5005

Removed "resize" and "maximize" abilities from AW_window_simple and
AW_window_message dialog boxes. This avoids broken layouts.

7 lines of code changed in 1 file:

• WINDOW: AW_window.cxx (+7 -1)

boehnel 2007-12-18 00:14 #41 Rev.: 5004

NULL

2 lines of code changed in 1 file:

• AISC_COM/AISC: aisc_debug_globals.pa (+2 -2)

boehnel 2007-12-18 00:11 #40 Rev.: 5003

"0 -> NULL"

80 lines of code changed in 22 files:

• AWTC: AWTC_next_neighbours.cxx (+3 -3)
• DIST: DI_view_matrix.cxx (+1 -1)
• EDIT: edit.cxx (+1 -1)
• GENOM: GEN_graphic.cxx (+1 -1)
• MULTI_PROBE: MP_mo_liste.cxx (+2 -2), MP_noclass.cxx (+1 -1), MP_sonde.cxx (+3 -3)
• ORS_CGI: ORS_C_PT.cxx (+4 -4)
• PARSIMONY: PARS_dtree.cxx (+1 -1)
• PHYLO: PH_main.cxx (+2 -2)
• PROBE_DESIGN: SaiProbeVisualization.cxx (+1 -1), probe_design.cxx (+17 -17)
• PROBE_SERVER/PROBE_GROUP: pg_search.cxx (+9 -9)
• PROBE_SERVER/PROBE_GROUP_DESIGN: pgd_main.cxx (+11 -11)
• RNA3D: RNA3D_Graphics.cxx (+1 -1), RNA3D_Interface.cxx (+1 -1)
• SECEDIT: SEC_graphic.cxx (+1 -1), SEC_main.cxx (+3 -3)
• SL/AW_NAME: AW_rename.cxx (+8 -8)
• TEST: D_awt_graphic_designer.cxx (+1 -1)
• TESTAWT: TB_extern.cxx (+4 -1)
• TESTVECTORFONT: TB_extern.cxx (+4 -1)

boehnel 2007-12-18 00:05 #39 Rev.: 5002

"0 -> NULL"

12 lines of code changed in 1 file:

• TOOLS: arb_probe.cxx (+12 -12)

boehnel 2007-12-17 23:51 #38 Rev.: 5001

I don't have any fonts...

2 lines of code changed in 1 file:

• WINDOW: AW_xfont.cxx (+2 -1)

boehnel 2007-12-17 20:09 #37 Rev.: 5000

"0 -> NULL"

2 lines of code changed in 1 file:

• AISC_COM/AISC: aisc_debug_globals.pa (+2 -2)

boehnel 2007-12-17 19:08 #36 Rev.: 4999

"int -> size_t"

3 lines of code changed in 1 file:

• ARBDB: adlmacros.h (+3 -3)

boehnel 2007-12-17 19:05 #35 Rev.: 4998

"0 -> NULL"

2 lines of code changed in 1 file:

• ARBDB: adsocket.c (+2 -2)

boehnel 2007-12-17 19:01 #34 Rev.: 4997

casting to long before left shift to get 64 bit working

5 lines of code changed in 1 file:

• PROBE: probe_tree.hxx (+5 -6)

boehnel 2007-12-17 18:48 #33 Rev.: 4996

removed old SGI stuff

2 lines of code changed in 4 files:

• GDE/CORE: BasicDisplay.c (-30), ChooseFile.c (-4)
• GL/glpng: glpng.c (+2 -4)
• WINDOW: AW_status.cxx (-4)

boehnel 2007-12-17 18:42 #32 Rev.: 4995

"0 -> NULL" to get 64bit work

1 lines of code changed in 1 file:

• EDIT4: ED4_root.cxx (+1 -1)

boehnel 2007-12-17 18:41 #31 Rev.: 4994

removing old HP/SGI stuff

0 lines of code changed in 5 files:

• util: config.IRIX (-9), config.Linux (-9), config.OSF1 (-9), config.SunOS (-9), config.SunOS4 (-9)

boehnel 2007-12-17 18:29 #30 Rev.: 4993

"0 -> NULL" to get 64bit work

9 lines of code changed in 1 file:

• NALIGNER: ali_pt.cxx (+9 -9)

boehnel 2007-12-17 18:10 #29 Rev.: 4992

"int -> long" to get 64bit work

5 lines of code changed in 1 file:

• ALIV3: a3_helix.cxx (+5 -5)

boehnel 2007-12-17 18:09 #28 Rev.: 4991

removing old HP/SGI stuff

2 lines of code changed in 6 files:

• config.makefile.template (-9)
• ARBDB: ad_save_load.c (-4), adcomm.c (+1 -8), adcompr.c (-4), adlmacros.h (+1 -1), adsocket.c (-9)

boehnel 2007-12-17 18:08 #27 Rev.: 4990

removing old SGI stuff

1 lines of code changed in 3 files:

• AISC_COM/C: client.c (-4), server.c (+1 -5)
• CONVERTALN: convert.h (-4)

boehnel 2007-12-17 18:03 #26 Rev.: 4989

removing old SGI things

0 lines of code changed in 1 file:

• ARBDB: adstring.c (-3)

westram 2007-12-07 18:34 #25 Rev.: 4988

- updated

30 lines of code changed in 2 files:

• arb_CHANGES.txt (+5 -1), arb_README.txt (+25 -27)

westram 2007-12-07 13:57 #24 Rev.: 4986

- latest fixes from WL

3 lines of code changed in 1 file:

• lib/import/nonformats: longgenbank.ift (+3 -3)

westram 2007-12-07 13:33 #23 Rev.: 4985

- reset mode at end of sequence data.
Now files with multiple entries work as well

8 lines of code changed in 2 files:

• PERL_SCRIPTS/ARBTOOLS/IFTHELP: genbank_gen_long_features.pl (+4 -1)
• PERL_SCRIPTS/IFTHELP: genbank_gen_long_features.pl (+4 -1)

westram 2007-12-07 12:58 #22 Rev.: 4984

- inserted version

1 lines of code changed in 1 file:

• arb_CHANGES.txt (+1 -1)

westram 2007-12-06 18:58 #21 Rev.: 4983

- read with gaps

1 lines of code changed in 1 file:

• lib/import: dssp.ift (+1 -1)

westram 2007-12-06 18:58 #20 Rev.: 4982

- converts secondary structure into 2nd species

10 lines of code changed in 2 files:

• PERL_SCRIPTS/ARBTOOLS/IFTHELP: dssp2fasta.pl (+5 -1)
• PERL_SCRIPTS/IFTHELP: dssp2fasta.pl (+5 -1)

westram 2007-12-06 16:35 #19 Rev.: 4981

- export error from GB_login

4 lines of code changed in 1 file:

• ARBDB: ad_load.c (+4 -1)

westram 2007-12-06 16:35 #18 Rev.: 4980

- fixed auto-detection

1 lines of code changed in 1 file:

• lib/import: dssp.ift (+1 -1)

murban 2007-12-06 16:07 #17 Rev.: 4979

- dssp import filter

6 lines of code changed in 1 file:

• lib/import: dssp.ift (new 6)

murban 2007-12-06 16:06 #16 Rev.: 4978

- dssp -> fasta converter

38 lines of code changed in 2 files:

• PERL_SCRIPTS/ARBTOOLS/IFTHELP: dssp2fasta.pl (new 37)
• PERL_SCRIPTS/IFTHELP: dssp2fasta.pl (new 1)

westram 2007-12-06 13:59 #15 Rev.: 4977

- empty-helix warning in DEBUG mode only

3 lines of code changed in 1 file:

• SECEDIT: SEC_layout.cxx (+3 -1)

westram 2007-12-06 13:36 #14 Rev.: 4976

*** empty log message ***

2 lines of code changed in 1 file:

• arb_CHANGES.txt (+2 -1)

westram 2007-12-06 13:01 #13 Rev.: 4975

- obsolete

0 lines of code changed in 3 files:

• lib/import: ebi_mod.ift (del), ebi_old.ift (del), ebi_old2.ift (del)

westram 2007-12-06 13:01 #12 Rev.: 4974

- renamed (_multi)

0 lines of code changed in 2 files:

• lib/import: ebi.ift (del), genbank.ift (del)

westram 2007-12-06 12:58 #11 Rev.: 4973

- various keywords changed

41 lines of code changed in 1 file:

• lib/import/nonformats: longgenbank.ift (+41 -38)

westram 2007-12-06 12:58 #10 Rev.: 4972

- typo, OC->OS

5 lines of code changed in 1 file:

• lib/import/nonformats: longebi.ift (+5 -5)

westram 2007-12-06 12:57 #9 Rev.: 4971

- genbank importer (silva-style)

134 lines of code changed in 1 file:

• lib/import: genbank_silva.ift (new 134)

westram 2007-12-06 12:57 #8 Rev.: 4970

- corrections from fog

3 lines of code changed in 1 file:

• lib/import: ebi_silva.ift (+3 -3)

westram 2007-12-06 09:59 #7 Rev.: 4969

- "install" libs in $ARBHOME/install/addlibs

19 lines of code changed in 1 file:

• lib/addlibs: install_libs.sh (+19 -32)

westram 2007-12-06 09:59 #6 Rev.: 4968

- append $ARBHOME/lib/addlibs to LD_LIBRARY_PATH and SHLIB_PATH

2 lines of code changed in 1 file:

• SH: arb (+2)

westram 2007-12-06 09:59 #5 Rev.: 4967

- dummy change to force update

1 lines of code changed in 1 file:

• arb_install.sh (+1 -1)

westram 2007-12-04 14:35 #4 Rev.: 4966

- changing ecoli-/helix-input-fields no longer crashes if
helix-/ecoli-data is missing

23 lines of code changed in 1 file:

• EDIT4: ED4_no_class.cxx (+23 -9)

westram 2007-12-04 14:34 #3 Rev.: 4965

- Warn if using Ctrl-J w/o having helix data

5 lines of code changed in 1 file:

• EDIT4: ED4_edit_string.cxx (+5 -2)

westram 2007-12-04 14:34 #2 Rev.: 4964

- check for ecoli-data before updating ecoli-position

3 lines of code changed in 1 file:

• EDIT4: ED4_cursor.cxx (+3 -2)

westram 2007-12-04 14:34 #1 Rev.: 4963

- added BI_ecoli_ref::gotData()

5 lines of code changed in 1 file:

• SL/HELIX: BI_helix.hxx (+5 -3)

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