-
westram
2025-12-23 15:30
#7
Rev.: 19619
-
95 lines of code changed in 2 files:
-
SOURCE_TOOLS:
dependency_graphs.pl (+7 -4),
needed_libs.pl (+88 -36)
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westram
2025-12-19 17:32
#6
Rev.: 19618
-
3 lines of code changed in 2 files:
-
Makefile (+1 -1)
-
UNIT_TESTER:
Makefile.test (+2 -10)
-
westram
2025-12-19 17:24
#5
Rev.: 19617
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4 lines of code changed in 13 files:
-
SL/ALIVIEW:
AliView.cxx (-12)
-
SL/AP_TREE:
AP_Tree.cxx (-12)
-
SL/ARB_TREE:
ARB_Tree.cxx (-14)
-
SL/DB_UI:
ui_species.cxx (-12)
-
SL/HELIX:
BI_helix.cxx (-12)
-
SL/QUERY:
query_expr.cxx (-12)
-
SL/REFENTRIES:
refentries.cxx (-12)
-
SL/SEQUENCE:
AP_seq_dna.cxx (-12)
-
SL/TREE_ADMIN:
TreeAdmin.cxx (-12)
-
UNIT_TESTER:
Makefile.test (+1),
forward_decl.hxx (del),
sym2testcode.pl (+3 -48)
-
XML:
xml.cxx (-13)
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westram
2025-12-19 17:18
#4
Rev.: 19616
-
10 lines of code changed in 6 files:
-
MERGE:
needs_libs (+2 -1)
-
SL/ALILINK:
needs_libs (+1 -2)
-
SL/GUI_ALIVIEW:
needs_libs (+1 -2)
-
SL/SAICALC:
needs_libs (+1 -1)
-
SOURCE_TOOLS:
dep.4dummy (+4 -4),
needed_libs.pl (+1 -1)
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westram
2025-12-19 17:08
#3
Rev.: 19615
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54 lines of code changed in 3 files:
-
SOURCE_TOOLS:
needed_libs.pl (+44 -3)
-
UNIT_TESTER:
Makefile.test (+9 -4),
sym2testcode.pl (+1)
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westram
2025-12-16 17:09
#2
Rev.: 19613
-
1468 lines of code changed in 330 files:
-
Makefile (+42 -12)
-
ARBDB:
Makefile (+1 -1)
-
ARB_GDE:
GDE.cxx (+3 -3),
GDE_event.cxx (+1 -1),
Makefile (+5 -5)
-
AWT:
.cvsignore (del),
AWT_TreeAwars.cxx (del),
AWT_advice.cxx (del),
AWT_asciiprint.cxx (del),
AWT_attributes.cxx (del),
AWT_automata.cxx (del),
AWT_canio.cxx (del),
AWT_canvas.cxx (del),
AWT_changekey.cxx (del),
AWT_codon_table.cxx (del),
AWT_config_manager.cxx (del),
AWT_csp.cxx (del),
AWT_db_browser.cxx (del),
AWT_dtree.cxx (del),
AWT_file_selection.cxx (del),
AWT_filter.cxx (del),
AWT_hexdump.cxx (del),
AWT_hotkeys.cxx (del),
AWT_imp_exp.cxx (del),
AWT_input_mask.cxx (del),
AWT_irstree.cxx (del),
AWT_item_sel_list.cxx (del),
AWT_iupac.cxx (del),
AWT_macro.cxx (del),
AWT_map_key.cxx (del),
AWT_misc.cxx (del),
AWT_modules.cxx (del),
AWT_nds.cxx (del),
AWT_nei.cxx (del),
AWT_pro_a_nucs.cxx (del),
AWT_prompt.cxx (del),
AWT_query_and_functions.cxx (del),
AWT_sel_boxes.cxx (del),
AWT_seq_colors.cxx (del),
AWT_seq_dna.cxx (del),
AWT_seq_protein.cxx (del),
AWT_seq_simple_pro.cxx (del),
AWT_species_sel_box.cxx (del),
AWT_tables.cxx (del),
AWT_tools.cxx (del),
AWT_translate.cxx (del),
AWT_tree.cxx (del),
AWT_tree_cb.cxx (del),
AWT_tree_cmp.cxx (del),
AWT_www.cxx (del),
BI_helix.cxx (del),
BI_helix.hxx (del),
Makefile (del),
awt.hxx (del),
awt_TreeAwars.hxx (del),
awt_advice.hxx (del),
awt_asciiprint.hxx (del),
awt_assert.hxx (del),
awt_attributes.hxx (del),
awt_automata.hxx (del),
awt_canvas.hxx (del),
awt_changekey.hxx (del),
awt_codon_table.hxx (del),
awt_config_manager.hxx (del),
awt_csp.hxx (del),
awt_dtree.hxx (del),
awt_hexdump.hxx (del),
awt_hotkeys.hxx (del),
awt_imp_exp.hxx (del),
awt_input_mask.hxx (del),
awt_input_mask_internal.hxx (del),
awt_irstree.hxx (del),
awt_item_sel_list.hxx (del),
awt_iupac.hxx (del),
awt_macro.hxx (del),
awt_map_key.hxx (del),
awt_misc.hxx (del),
awt_modules.hxx (del),
awt_nds.hxx (del),
awt_nei.hxx (del),
awt_parsimony_defaults.hxx (del),
awt_preset.hxx (del),
awt_pro_a_nucs.hxx (del),
awt_prompt.hxx (del),
awt_sel_boxes.hxx (del),
awt_seq_colors.hxx (del),
awt_seq_dna.hxx (del),
awt_seq_protein.hxx (del),
awt_seq_simple_pro.hxx (del),
awt_translate.hxx (del),
awt_tree.hxx (del),
awt_tree_cb.hxx (del),
awt_tree_cmp.hxx (del),
awt_www.hxx (del),
awtfilter.hxx (del),
awtlocal.hxx (del),
needs_libs.libAWT_so (del),
newick_doc.html (del),
refentries.cxx (del),
refentries.h (del)
-
AWTC:
Makefile (+1 -1)
-
AWTI:
AWTI_edit.cxx (+1 -1),
AWTI_import.cxx (+1 -1),
Makefile (+6 -6),
awti_edit.hxx (+2 -2),
needs_libs (+1 -1)
-
CONSENSUS_TREE:
Makefile (+1 -1)
-
CORE:
Makefile (+1 -1)
-
DBSERVER:
Makefile (+1 -1)
-
DIST:
DI_clusters.cxx (+1 -1),
DI_main.cxx (+5 -5),
DI_matr.cxx (+5 -5),
DI_view_matrix.cxx (+3 -3),
Makefile (+10 -10),
di_matr.hxx (+1 -1),
di_view_matrix.hxx (+1),
needs_libs (+2 -2)
-
EDIT4:
ED4_block.cxx (+1 -1),
ED4_dots.cxx (+2 -2),
ED4_edit_string.cxx (+1 -1),
ED4_flags.cxx (+1 -1),
ED4_main.cxx (+2 -2),
ED4_naligner.cxx (+1 -1),
ED4_no_class.cxx (+4 -4),
ED4_protein_2nd_structure.cxx (+1 -1),
ED4_root.cxx (+2 -2),
ED4_search.cxx (+2 -2),
ED4_visualizeSAI.cxx (+3 -3),
Makefile (+22 -22),
ed4_search.hxx (+1 -1),
graph_aligner_gui.cxx (+2 -2),
needs_libs (+3 -1)
-
EISPACK:
Makefile (+1 -1)
-
GENOM:
EXP_interface.cxx (+2 -2),
EXP_main.cxx (+1 -2),
GEN_graphic.hxx (+2 -2),
GEN_interface.cxx (+2 -2),
GEN_map.cxx (+2 -3),
GEN_nds.cxx (+1 -1),
Makefile (+11 -13),
needs_libs (+2)
-
GL/glAW:
Makefile (+1 -1)
-
GL/glpng:
Makefile (+1 -1)
-
ISLAND_HOPPING:
Makefile (+1 -1)
-
MERGE:
MG_alignment.cxx (+1 -1),
MG_configs.cxx (+2 -2),
MG_extendeds.cxx (+2 -2),
MG_gene_species.cxx (+1 -1),
MG_main.cxx (+2 -2),
MG_trees.cxx (+1 -1),
Makefile (+10 -10),
needs_libs (+1 -1)
-
MULTI_PROBE:
MP_Window.cxx (+2 -2),
MP_main.cxx (-1),
Makefile (+5 -5)
-
NALIGNER:
Makefile (+1 -1)
-
NAMES:
Makefile (+1 -1),
needs_libs (-1)
-
NTREE:
AP_consensus.cxx (+3 -3),
AP_pos_var_pars.cxx (+2 -2),
ColumnStat_2_gnuplot.cxx (+2 -2),
Makefile (+52 -53),
NT_branchAnalysis.cxx (+1 -2),
NT_cb.cxx (+1 -2),
NT_concatenate.cxx (+2 -2),
NT_edconf.cxx (+3 -3),
NT_extern.cxx (+6 -6),
NT_group_search.cxx (+2 -2),
NT_import.cxx (+1 -2),
NT_ins_col.cxx (+2 -2),
NT_join.cxx (+1 -1),
NT_main.cxx (+3 -3),
NT_shadeTree.cxx (-2),
NT_sync_scroll.h (+2 -2),
NT_syncroot.cxx (+1 -1),
NT_taxonomy.cxx (+1 -1),
NT_trackAliChanges.cxx (+1 -1),
NT_validNames.cxx (+1 -1),
ScrollSynchronizer.cxx (-1),
ad_ext.cxx (+1 -1),
ad_spec.cxx (+1 -2),
ad_transpro.cxx (+1 -1),
ad_trees.cxx (+4 -4)
-
PARSIMONY:
Makefile (+13 -13),
PARS_dtree.cxx (+4 -3),
PARS_main.cxx (+5 -5),
needs_libs (+1 -1),
pars_dtree.hxx (+2 -1),
pars_main.hxx (+1 -1)
-
PHYLO:
Makefile (+4 -4),
PH_filt.cxx (+1 -1),
PH_main.cxx (+2 -2),
needs_libs (+2 -4)
-
PRIMER_DESIGN:
Makefile (+3 -3),
needs_libs (+1 -1),
primer_design.cxx (+2 -2)
-
PROBE:
Makefile (+1 -1)
-
PROBE_DESIGN:
Makefile (+8 -8),
SaiProbeVisualization.cxx (+2 -2),
SaiProbeVisualization.hxx (+2 -2),
needs_libs (+1),
probe_design.cxx (+3 -3)
-
RNA3D:
Makefile (+7 -7),
RNA3D_Graphics.hxx (+2 -2),
RNA3D_OpenGLGraphics.cxx (+1 -1),
needs_libs (+1 -1)
-
RNACMA:
Makefile (+1 -1)
-
SECEDIT:
Makefile (+7 -7),
SEC_graphic.hxx (+2 -2),
SEC_main.cxx (+1 -1),
needs_libs (+2 -2)
-
SEQ_QUALITY:
Makefile (+4 -4),
SQ_main.cxx (+3 -3)
-
SERVERCNTRL:
Makefile (+1 -1)
-
SL:
README (+11 -8)
-
SL/ALILINK:
AdminGui.cxx (+2 -2),
Makefile (+3 -3),
needs_libs (+2 -1)
-
SL/ALIVIEW:
AliView.cxx (+12),
Makefile (+1 -1)
-
SL/AP_TREE:
AP_Tree.cxx (+12),
Makefile (+1 -1),
needs_libs (+1 -1)
-
SL/ARB_TREE:
ARB_Tree.cxx (+14),
Makefile (+1 -1)
-
SL/AW_HELIX:
AW_helix.cxx (+1 -1),
Makefile (+2 -2),
needs_libs (+1 -1)
-
SL/AW_NAME:
AW_names_admin.cxx (+1 -1),
Makefile (+2 -2),
needs_libs (+1 -1)
-
SL/CB:
Makefile (+1 -1),
cb.h (+1 -1)
-
SL/CONSENSUS:
Makefile (+1 -1)
-
SL/DB_QUERY:
Makefile (+3 -3),
db_query.cxx (+2 -2)
-
SL/DB_SCANNER:
Makefile (+1 -1)
-
SL/DB_UI:
Makefile (+4 -4),
ui_species.cxx (+14 -3)
-
SL/FAST_ALIGNER:
Makefile (+3 -3),
fast_aligner.cxx (+2 -2),
needs_libs (+1 -1)
-
SL/FILTER:
AP_filter.cxx (+1 -1),
AP_filter.hxx (+1 -1),
Makefile (+1 -1)
-
SL/FILTSEQEXP:
Makefile (+1 -1)
-
SL/GROUP_SEARCH:
Makefile (+1 -1)
-
SL/GUI_ALIVIEW:
AWT_filter.cxx (del),
ColumnStat.cxx (+1 -1),
GUI_aliview.cxx (+2 -2),
Makefile (+45 -45),
ali_filter.cxx (new 483),
ali_filter.hxx (new 64),
awt_filter.hxx (del),
gui_aliview.hxx (+1 -1),
needs_libs (+1 -2)
-
SL/HEADERTESTS:
Makefile (+1 -1)
-
SL/HELIX:
BI_helix.cxx (+12),
Makefile (+1 -1)
-
SL/INSDEL:
Makefile (+1 -1)
-
SL/ITEMS:
Makefile (+2 -2),
item_sel_list.cxx (+1 -1),
needs_libs (+1 -1)
-
SL/ITEM_SHADER:
Makefile (+3 -3),
field_shader.cxx (+1 -1),
item_shader.cxx (+1 -1)
-
SL/LOCATION:
Makefile (+1 -1)
-
SL/MACROS:
Makefile (+1 -1)
-
SL/MATRIX:
Makefile (+1 -1)
-
SL/NDS:
Makefile (+3 -3),
nds.cxx (+4 -4)
-
SL/NEIGHBOURJOIN:
Makefile (+1 -1)
-
SL/PRONUC:
Makefile (+1 -1)
-
SL/PTCLEAN:
Makefile (+1 -1),
needs_libs (-1)
-
SL/PVP:
Makefile (+1 -1)
-
SL/QUERY:
Makefile (+1 -1),
query_expr.cxx (+12)
-
SL/REFENTRIES:
Makefile (+2 -2),
needs_libs (+2 -1),
refentries.cxx (+13 -1)
-
SL/REGEXPR:
Makefile (+1 -1)
-
SL/SAICALC:
Makefile (+3 -3),
needs_libs (+2 -1),
saicalc.cxx (+2 -2)
-
SL/SEQIO:
Makefile (+1 -1)
-
SL/SEQUENCE:
AP_seq_dna.cxx (+12),
Makefile (+1 -1)
-
SL/TRANSLATE:
Makefile (+1 -1)
-
SL/TREEDISP:
Makefile (+5 -5),
TreeDisplay.cxx (+3 -3),
TreeDisplay.hxx (+3 -3),
needs_libs (+1)
-
SL/TREE_ADMIN:
Makefile (+2 -2),
TreeAdmin.cxx (+13 -1),
needs_libs (+1 -2)
-
SL/TREE_READ:
Makefile (+1 -1)
-
SL/TREE_WRITE:
Makefile (+1 -1),
needs_libs (+1)
-
SL/XFERGUI:
Makefile (+2 -2),
needs_libs (+1 -1),
xfergui.cxx (+1 -1)
-
SL/XFERSET:
Makefile (+1 -1)
-
SOURCE_TOOLS:
dep.4dummy (+31 -26),
dep.alltargets (+6 -1),
dep.libtargets (+6 -1),
dependency_graphs.pl (+4 -2),
generate_all_links.sh (+13 -14),
needed_libs.pl (+5 -1)
-
STAT:
Makefile (+3 -3),
ST_window.cxx (+2 -2)
-
TREEGEN:
Makefile (+1 -1)
-
UNIT_TESTER:
Makefile (+2 -1),
Makefile.suite (+10 -3),
Makefile.test (+25 -5),
forward_decl.hxx (new 27),
reporter.pl (+16 -2),
sym2testcode.pl (+77 -23)
-
WETC:
Makefile (+3 -2),
WETC_main.cxx (+6 -2),
needs_libs (+2 -2)
-
WINDOW:
AW_device_click.cxx (+1 -1),
Makefile (+1 -1),
aw_def.hxx (-5),
aw_system.hxx (+1 -1)
-
XML:
Makefile (+1 -1),
xml.cxx (+12)
-
westram
2025-12-05 11:10
#1
Rev.: 19581
-
3 lines of code changed in 1 file:
-
WETC:
WETC_main.cxx (+3 -3)