/trunk Developers: westram

Login name:
westram
Total Commits:
41,303 (86.8%)
Lines of Code:
1,185,136 (47.6%)
Most Recent Commit:
2020-10-19 12:14
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Activity in Directories

Directory Changes Lines of Code Lines per Change
Totals 41303 (100.0%) 1185136 (100.0%) 28.6
ARBDB/ 3850 (9.3%) 119558 (10.1%) 31.0
lib/nas/ 30 (0.1%) 66561 (5.6%) 2218.7
GDE/PHYLIP/ 146 (0.4%) 56082 (4.7%) 384.1
WINDOW/ 2583 (6.3%) 55362 (4.7%) 21.4
AWT/ 2188 (5.3%) 48866 (4.1%) 22.3
UNIT_TESTER/run/display/ 184 (0.4%) 46525 (3.9%) 252.8
NTREE/ 2445 (5.9%) 46069 (3.9%) 18.8
EDIT4/ 2366 (5.7%) 43272 (3.7%) 18.2
HELP_SOURCE/oldhelp/ 1847 (4.5%) 36394 (3.1%) 19.7
CONVERTALN/ 458 (1.1%) 29082 (2.5%) 63.4
UNIT_TESTER/run/ 128 (0.3%) 27930 (2.4%) 218.2
TOOLS/ 704 (1.7%) 23189 (2.0%) 32.9
GDE/PHYLIP/doc/ 42 (0.1%) 21478 (1.8%) 511.3
GENOM_IMPORT/ 385 (0.9%) 19986 (1.7%) 51.9
PARSIMONY/ 735 (1.8%) 18984 (1.6%) 25.8
PROBE/ 680 (1.6%) 18843 (1.6%) 27.7
DIST/ 729 (1.8%) 17310 (1.5%) 23.7
SOURCE_TOOLS/ 772 (1.9%) 15373 (1.3%) 19.9
GDE/PHYML/ 31 (0.1%) 15188 (1.3%) 489.9
/ 1013 (2.5%) 14423 (1.2%) 14.2
GENOM/ 871 (2.1%) 14171 (1.2%) 16.2
MERGE/ 702 (1.7%) 13859 (1.2%) 19.7
SECEDIT/ 577 (1.4%) 13438 (1.1%) 23.2
GDE/PHYML20130708/phyml/ 9 (0.0%) 13410 (1.1%) 1490.0
SL/FAST_ALIGNER/ 297 (0.7%) 12383 (1.0%) 41.6
lib/ 59 (0.1%) 12300 (1.0%) 208.4
ARB_GDE/ 573 (1.4%) 11647 (1.0%) 20.3
PROBE_DESIGN/ 485 (1.2%) 10564 (0.9%) 21.7
CORE/ 517 (1.3%) 10323 (0.9%) 19.9
SL/TREEDISP/ 477 (1.2%) 10061 (0.8%) 21.0
TEMPLATES/ 307 (0.7%) 9246 (0.8%) 30.1
NALIGNER/ 353 (0.9%) 9226 (0.8%) 26.1
UNIT_TESTER/ 519 (1.3%) 9140 (0.8%) 17.6
MULTI_PROBE/ 530 (1.3%) 9064 (0.8%) 17.1
ptpan/ 128 (0.3%) 8692 (0.7%) 67.9
lib/pictures/ 407 (1.0%) 8554 (0.7%) 21.0
PROBE_WEB/CLIENT/ 267 (0.6%) 8512 (0.7%) 31.8
AWTI/ 373 (0.9%) 7958 (0.7%) 21.3
GDE/FASTDNAML/ 37 (0.1%) 7391 (0.6%) 199.7
AWTC/ 349 (0.8%) 6988 (0.6%) 20.0
PRIMER_DESIGN/ 281 (0.7%) 6874 (0.6%) 24.4
AISC/ 199 (0.5%) 6857 (0.6%) 34.4
EISPACK/ 16 (0.0%) 6736 (0.6%) 421.0
GDE/RAxML/ 61 (0.1%) 6650 (0.6%) 109.0
GDE/AxML/ 17 (0.0%) 6003 (0.5%) 353.1
lib/import/ 211 (0.5%) 5908 (0.5%) 28.0
HELP_SOURCE/ 218 (0.5%) 5664 (0.5%) 25.9
PHYLO/ 399 (1.0%) 4756 (0.4%) 11.9
ALIV3/ 174 (0.4%) 4669 (0.4%) 26.8
UNIT_TESTER/run/impexp/ 50 (0.1%) 4434 (0.4%) 88.6
CONSENSUS_TREE/ 311 (0.8%) 4411 (0.4%) 14.1
PROBE_SERVER/PROBE_GROUP/ 91 (0.2%) 4351 (0.4%) 47.8
PROBE_SET/ 307 (0.7%) 4323 (0.4%) 14.0
AISC_COM/C/ 280 (0.7%) 4058 (0.3%) 14.4
STAT/ 266 (0.6%) 3842 (0.3%) 14.4
ISLAND_HOPPING/ 132 (0.3%) 3810 (0.3%) 28.8
lib/pixmaps/ 302 (0.7%) 3582 (0.3%) 11.8
AISC_MKPTPS/ 108 (0.3%) 3567 (0.3%) 33.0
AISC_COM/AISC/ 108 (0.3%) 3467 (0.3%) 32.1
GDE/CLUSTALW/ 41 (0.1%) 3373 (0.3%) 82.2
RNA3D/ 298 (0.7%) 3358 (0.3%) 11.2
ARBDBPP/ 72 (0.2%) 2998 (0.3%) 41.6
SH/ 165 (0.4%) 2980 (0.3%) 18.0
SL/DB_QUERY/ 163 (0.4%) 2955 (0.2%) 18.1
lib/addlibs/ 13 (0.0%) 2859 (0.2%) 219.9
EDIT/ 91 (0.2%) 2810 (0.2%) 30.8
GDEHELP/MENUS/ 240 (0.6%) 2635 (0.2%) 10.9
GDE/MOLPHY/ 105 (0.3%) 2531 (0.2%) 24.1
SEQ_QUALITY/ 232 (0.6%) 2516 (0.2%) 10.8
PGT/ 178 (0.4%) 2495 (0.2%) 14.0
lib/import/nonformats/ 19 (0.0%) 2340 (0.2%) 123.1
UNIT_TESTER/run/consense/3/ 11 (0.0%) 2336 (0.2%) 212.3
lib/pictures/edit4/ 45 (0.1%) 2300 (0.2%) 51.1
SL/AP_TREE/ 148 (0.4%) 2287 (0.2%) 15.4
ALEIO/ 53 (0.1%) 2265 (0.2%) 42.7
PROBE_SERVER/PROBE_GROUP_DESIGN/ 46 (0.1%) 2253 (0.2%) 48.9
SL/DB_SCANNER/ 131 (0.3%) 2236 (0.2%) 17.0
util/ 209 (0.5%) 2232 (0.2%) 10.6
SL/PRONUC/ 122 (0.3%) 2217 (0.2%) 18.1
RNACMA/ 73 (0.2%) 2178 (0.2%) 29.8
GL/glAW/ 72 (0.2%) 2108 (0.2%) 29.2
SL/ALILINK/ 34 (0.1%) 2070 (0.2%) 60.8
NAMES/ 120 (0.3%) 2062 (0.2%) 17.1
READSEQ/ 34 (0.1%) 2002 (0.2%) 58.8
lib/pixmaps/unused/ 147 (0.4%) 1993 (0.2%) 13.5
SL/TREE_READ/ 91 (0.2%) 1991 (0.2%) 21.8
SL/AW_NAME/ 168 (0.4%) 1822 (0.2%) 10.8
PROBE_SERVER/ 85 (0.2%) 1809 (0.2%) 21.2
lib/pictures/consensus/ 13 (0.0%) 1667 (0.1%) 128.2
ORS_CGI/ 55 (0.1%) 1633 (0.1%) 29.6
SL/SEQIO/ 74 (0.2%) 1620 (0.1%) 21.8
SL/DB_UI/ 121 (0.3%) 1570 (0.1%) 12.9
GL/glpng/ 36 (0.1%) 1552 (0.1%) 43.1
SL/HELIX/ 94 (0.2%) 1509 (0.1%) 16.0
PERL2ARB/ 150 (0.4%) 1489 (0.1%) 9.9
UNIT_TESTER/run/consense/2/ 13 (0.0%) 1468 (0.1%) 112.9
SL/ITEMS/ 114 (0.3%) 1450 (0.1%) 12.7
PROBE_SERVER/WORKER/ 33 (0.1%) 1432 (0.1%) 43.3
SL/GUI_ALIVIEW/ 157 (0.4%) 1403 (0.1%) 8.9
SERVERCNTRL/ 126 (0.3%) 1394 (0.1%) 11.0
lib/pictures/awt/ 75 (0.2%) 1360 (0.1%) 18.1
TEST/ 40 (0.1%) 1327 (0.1%) 33.1
ARBDB2/ 29 (0.1%) 1309 (0.1%) 45.1
SL/CB/ 46 (0.1%) 1288 (0.1%) 28.0
TRS/ 37 (0.1%) 1279 (0.1%) 34.5
lib/pictures/merge/ 48 (0.1%) 1214 (0.1%) 25.2
lib/pixmaps/pgt/ 43 (0.1%) 1199 (0.1%) 27.8
ARBDB_COMPRESS/ 30 (0.1%) 1197 (0.1%) 39.9
GDE/CORE/ 94 (0.2%) 1193 (0.1%) 12.6
SEER/ 41 (0.1%) 1115 (0.1%) 27.1
GDEHELP/ 129 (0.3%) 1098 (0.1%) 8.5
XML/ 70 (0.2%) 1063 (0.1%) 15.1
PERL_SCRIPTS/SPECIES/ 28 (0.1%) 1020 (0.1%) 36.4
SL/SEQUENCE/ 136 (0.3%) 995 (0.1%) 7.3
SL/NDS/ 80 (0.2%) 962 (0.1%) 12.0
PROBE_COM/ 98 (0.2%) 912 (0.1%) 9.3
TREE_COMPRESS/ 9 (0.0%) 909 (0.1%) 101.0
SL/TREE_WRITE/ 81 (0.2%) 879 (0.1%) 10.8
ARBDBS/ 29 (0.1%) 850 (0.1%) 29.3
UNIT_TESTER/run/consense/1/ 17 (0.0%) 813 (0.1%) 47.8
SL/GROUP_SEARCH/ 20 (0.0%) 783 (0.1%) 39.1
GDE/MOLPHY/doc/ 4 (0.0%) 758 (0.1%) 189.5
SL/LOCATION/ 29 (0.1%) 754 (0.1%) 26.0
PERL_SCRIPTS/ARBTOOLS/ 17 (0.0%) 743 (0.1%) 43.7
TREEGEN/ 123 (0.3%) 701 (0.1%) 5.6
DBSERVER/ 67 (0.2%) 695 (0.1%) 10.3
SL/FILTER/ 68 (0.2%) 692 (0.1%) 10.1
lib/macros/.checks/ 3 (0.0%) 675 (0.1%) 225.0
lib/pixmaps/icons/unused/ 32 (0.1%) 662 (0.1%) 20.6
SL/AW_HELIX/ 72 (0.2%) 657 (0.1%) 9.1
lib/pixmaps/edit/ 72 (0.2%) 632 (0.1%) 8.7
UNIT_TESTER/run/pars/ 52 (0.1%) 597 (0.1%) 11.4
UNIT_TESTER/run/help/ 7 (0.0%) 584 (0.0%) 83.4
ORS_SERVER/ 33 (0.1%) 580 (0.0%) 17.5
PROBE_SERVER/TREE_MERGE/ 14 (0.0%) 572 (0.0%) 40.8
PERL_SCRIPTS/MAUS/ 11 (0.0%) 549 (0.0%) 49.9
GDE/MUSCLE/src/unused/ 3 (0.0%) 548 (0.0%) 182.6
PROBE_WEB/SERVER/ 43 (0.1%) 523 (0.0%) 12.1
UNIT_TESTER/run/xsub/ 5 (0.0%) 511 (0.0%) 102.2
SOURCE_TOOLS/release/ 15 (0.0%) 507 (0.0%) 33.8
UNIT_TESTER/run/tools/ 44 (0.1%) 499 (0.0%) 11.3
SL/FILE_BUFFER/ 43 (0.1%) 495 (0.0%) 11.5
GDE/SUPPORT/ 26 (0.1%) 494 (0.0%) 19.0
PERL_SCRIPTS/GENOME/ 16 (0.0%) 479 (0.0%) 29.9
SL/REGEXPR/ 47 (0.1%) 473 (0.0%) 10.0
lib/pixmaps/edit/unused/ 48 (0.1%) 469 (0.0%) 9.7
GDE/RAxML8/ 10 (0.0%) 469 (0.0%) 46.9
lib/pictures/unused/ 11 (0.0%) 462 (0.0%) 42.0
NAMES_COM/ 70 (0.2%) 457 (0.0%) 6.5
lib/submit/ 2 (0.0%) 446 (0.0%) 223.0
lib/inputMasks/ 25 (0.1%) 436 (0.0%) 17.4
GDEHELP/HELP_WRITTEN/ 15 (0.0%) 431 (0.0%) 28.7
GDE/HGL_SRC/ 27 (0.1%) 418 (0.0%) 15.4
SL/MACROS/ 71 (0.2%) 401 (0.0%) 5.6
SL/TREE_ADMIN/ 34 (0.1%) 396 (0.0%) 11.6
SL/ARB_TREE/ 81 (0.2%) 396 (0.0%) 4.8
GDEHELP/HELP_PLAIN/ 11 (0.0%) 371 (0.0%) 33.7
lib/pictures/faligner/ 16 (0.0%) 369 (0.0%) 23.0
bin/ 28 (0.1%) 357 (0.0%) 12.7
SL/ROOTED_TREE/ 17 (0.0%) 350 (0.0%) 20.5
SL/NEIGHBOURJOIN/ 58 (0.1%) 350 (0.0%) 6.0
lib/pictures/pars/ 7 (0.0%) 335 (0.0%) 47.8
lib/pictures/query/ 17 (0.0%) 332 (0.0%) 19.5
SL/MATRIX/ 50 (0.1%) 326 (0.0%) 6.5
SL/PTCLEAN/ 39 (0.1%) 323 (0.0%) 8.2
TESTAWT/ 17 (0.0%) 317 (0.0%) 18.6
lib/pixmaps/icons/ 17 (0.0%) 310 (0.0%) 18.2
TESTVECTORFONT/ 15 (0.0%) 307 (0.0%) 20.4
lib/pictures/awtc/ 17 (0.0%) 305 (0.0%) 17.9
CAT/ 20 (0.0%) 300 (0.0%) 15.0
lib/pixmaps/merge/ 7 (0.0%) 295 (0.0%) 42.1
lib/pixmaps/print/ 20 (0.0%) 281 (0.0%) 14.0
HELP_SOURCE/genhelp/ 23 (0.1%) 267 (0.0%) 11.6
GDE/ 45 (0.1%) 258 (0.0%) 5.7
BUGEX/ 11 (0.0%) 250 (0.0%) 22.7
PERL_SCRIPTS/test/ 18 (0.0%) 239 (0.0%) 13.2
PERL_SCRIPTS/ARBTOOLS/IFTHELP/ 16 (0.0%) 237 (0.0%) 14.8
SL/CONSENSUS/ 17 (0.0%) 225 (0.0%) 13.2
SL/ 40 (0.1%) 212 (0.0%) 5.3
HEADERLIBS/ 11 (0.0%) 210 (0.0%) 19.0
SL/REFENTRIES/ 42 (0.1%) 204 (0.0%) 4.8
GDE/MrBAYES/mrbayes_3.2.1/ 7 (0.0%) 194 (0.0%) 27.7
lib/macros/ 26 (0.1%) 188 (0.0%) 7.2
BINDEP/ 45 (0.1%) 187 (0.0%) 4.1
GDE/CLUSTAL/ 24 (0.1%) 184 (0.0%) 7.6
UNIT_TESTER/valgrind/ 5 (0.0%) 182 (0.0%) 36.4
AISC_COM/ 9 (0.0%) 182 (0.0%) 20.2
SL/INSDEL/ 38 (0.1%) 180 (0.0%) 4.7
PERLTOOLS/ 44 (0.1%) 180 (0.0%) 4.0
SL/TRANSLATE/ 39 (0.1%) 177 (0.0%) 4.5
SL/ITEM_SHADER/ 38 (0.1%) 173 (0.0%) 4.5
PERL_SCRIPTS/SAI/ 5 (0.0%) 163 (0.0%) 32.6
CHIP/ 29 (0.1%) 160 (0.0%) 5.5
WETC/ 54 (0.1%) 158 (0.0%) 2.9
SOURCE_TOOLS/COMPILE_COMPAT/ 14 (0.0%) 154 (0.0%) 11.0
GDE/TREEPUZZLE/ 28 (0.1%) 154 (0.0%) 5.5
GDE/LOOPTOOL/ 26 (0.1%) 152 (0.0%) 5.8
lib/export/ 43 (0.1%) 145 (0.0%) 3.3
lib/pictures/cpro/ 6 (0.0%) 143 (0.0%) 23.8
lib/sellists/ 28 (0.1%) 139 (0.0%) 4.9
lib/pixmaps/print/unused/ 8 (0.0%) 138 (0.0%) 17.2
SL/XFERGUI/ 5 (0.0%) 136 (0.0%) 27.2
UNIT_TESTER/run/general/ 12 (0.0%) 134 (0.0%) 11.1
lib/macros/ARB/SEQ_DATA/ 4 (0.0%) 127 (0.0%) 31.7
PERL_SCRIPTS/BIOPERL/ 3 (0.0%) 123 (0.0%) 41.0
lib/pictures/phylo/ 9 (0.0%) 118 (0.0%) 13.1
GDE/TREEPUZZLE/src/ 14 (0.0%) 113 (0.0%) 8.0
lib/dtd/ 8 (0.0%) 111 (0.0%) 13.8
GL/ 14 (0.0%) 110 (0.0%) 7.8
AWDEMO/ 18 (0.0%) 107 (0.0%) 5.9
PERL_SCRIPTS/GENERAL/ 1 (0.0%) 99 (0.0%) 99.0
SL/FILTSEQEXP/ 16 (0.0%) 94 (0.0%) 5.8
ARBDB/EXAMPLES/ 19 (0.0%) 89 (0.0%) 4.6
PERL_SCRIPTS/lib/ 2 (0.0%) 80 (0.0%) 40.0
SOURCE_TOOLS/docs/ 1 (0.0%) 79 (0.0%) 79.0
PERL_SCRIPTS/ARBTOOLS/TESTS/ 2 (0.0%) 78 (0.0%) 39.0
GDE/PHYML20130708/ 11 (0.0%) 74 (0.0%) 6.7
lib/BUGS/ 5 (0.0%) 71 (0.0%) 14.2
SL/QUERY/ 14 (0.0%) 71 (0.0%) 5.0
ORS_COM/ 23 (0.1%) 66 (0.0%) 2.8
UNIT_TESTER/run/consense/4/ 6 (0.0%) 61 (0.0%) 10.1
lib/motifHack/ 8 (0.0%) 56 (0.0%) 7.0
SL/ALIVIEW/ 29 (0.1%) 54 (0.0%) 1.8
XML_IMPORT/IMP_TREE/ 36 (0.1%) 53 (0.0%) 1.4
XML_IMPORT/ 12 (0.0%) 47 (0.0%) 3.9
PROBE_WEB/ 4 (0.0%) 46 (0.0%) 11.5
lib/pictures/window/ 3 (0.0%) 45 (0.0%) 15.0
GDE/MAFFT/ 6 (0.0%) 43 (0.0%) 7.1
UNIT_TESTER/run/pvp/ 8 (0.0%) 41 (0.0%) 5.1
lib/arb_default/ 19 (0.0%) 40 (0.0%) 2.1
etc/ 11 (0.0%) 38 (0.0%) 3.4
GDE/MrBAYES/ 5 (0.0%) 37 (0.0%) 7.4
SL/XFERSET/ 10 (0.0%) 36 (0.0%) 3.6
GDE/MAFFT/mafft-7.055-with-extensions/core/ 2 (0.0%) 35 (0.0%) 17.5
PERL_SCRIPTS/ARBTOOLS/DOCUMENTED/ 3 (0.0%) 33 (0.0%) 11.0
GDE/MAFFT/mafft-7.053-without-extensions/ 1 (0.0%) 33 (0.0%) 33.0
RNA3D/Attic/OPENGL/ 14 (0.0%) 32 (0.0%) 2.2
HELP_SOURCE/oldhelp/prompt/ 2 (0.0%) 32 (0.0%) 16.0
PERL_SCRIPTS/ACI/ 1 (0.0%) 30 (0.0%) 30.0
HELP_SOURCE/oldhelp/seer/ 15 (0.0%) 30 (0.0%) 2.0
GDE/MUSCLE/ 5 (0.0%) 30 (0.0%) 6.0
UNIT_TESTER/run/trees/ 1 (0.0%) 27 (0.0%) 27.0
UNIT_TESTER/run/consense/6/ 2 (0.0%) 26 (0.0%) 13.0
lib/gde/ 3 (0.0%) 23 (0.0%) 7.6
UNIT_TESTER/run/distance/ 6 (0.0%) 19 (0.0%) 3.1
PERL_SCRIPTS/IFTHELP/ 10 (0.0%) 18 (0.0%) 1.8
GDE/FASTTREE/ 5 (0.0%) 18 (0.0%) 3.6
SL/PVP/ 5 (0.0%) 14 (0.0%) 2.8
doc/ 2 (0.0%) 11 (0.0%) 5.5
GDE/SATIVA/ 6 (0.0%) 11 (0.0%) 1.8
GDE/PROBCONS/ 3 (0.0%) 10 (0.0%) 3.3
GDE/TREEPUZZLE/doc/ 5 (0.0%) 9 (0.0%) 1.8
GDEHELP/DATA_FILES/ 2 (0.0%) 8 (0.0%) 4.0
UNIT_TESTER/sockets/ 3 (0.0%) 7 (0.0%) 2.3
GDE/PROBCONS/probcons/ 3 (0.0%) 7 (0.0%) 2.3
lib/pictures/unused/findcorr/ 27 (0.1%) 5 (0.0%) 0.1
BINDINGS/ 5 (0.0%) 5 (0.0%) 1.0
fig2dev/dev/ 62 (0.2%) 4 (0.0%) 0.0
fig2dev/ 68 (0.2%) 4 (0.0%) 0.0
UNIT_TESTER/run/diff/ 8 (0.0%) 4 (0.0%) 0.5
GDE/PHYML20130708/phyml/src/ 2 (0.0%) 4 (0.0%) 2.0
GDE/MAFFT/mafft-7.055-with-extensions/extensions/mxscarna_src/ 2 (0.0%) 4 (0.0%) 2.0
GDE/MUSCLE/src/ 5 (0.0%) 3 (0.0%) 0.6
SL/SAICALC/ 7 (0.0%) 2 (0.0%) 0.2
PERL_SCRIPTS/MACROS/ 4 (0.0%) 2 (0.0%) 0.5
GDE/MAFFT/mafft-7.055-with-extensions/extensions/ 2 (0.0%) 2 (0.0%) 1.0
GDE/MAFFT/mafft-7.055-with-extensions/ 3 (0.0%) 2 (0.0%) 0.6
lib/motifHack/pixmaps/ 3 (0.0%) 1 (0.0%) 0.3
UNIT_TESTER/run/homefake/.arb_prop/ 1 (0.0%) 1 (0.0%) 1.0
UNIT_TESTER/run/fakehome/ 2 (0.0%) 1 (0.0%) 0.5
UNIT_TESTER/flags/ 2 (0.0%) 1 (0.0%) 0.5
lib/rna3d/images/ 44 (0.1%) 0 (0.0%) 0.0
lib/rna3d/ 2 (0.0%) 0 (0.0%) 0.0
lib/pixmaps/seer/ 3 (0.0%) 0 (0.0%) 0.0
lib/pictures/unused/demo/ 27 (0.1%) 0 (0.0%) 0.0
lib/pictures/seer/ 5 (0.0%) 0 (0.0%) 0.0
lib/pictures/findcorr/ 20 (0.0%) 0 (0.0%) 0.0
lib/pictures/etc/ 1 (0.0%) 0 (0.0%) 0.0
lib/pictures/demo/ 27 (0.1%) 0 (0.0%) 0.0
lib/pictures/PARS/ 1 (0.0%) 0 (0.0%) 0.0
lib/icons/ 2 (0.0%) 0 (0.0%) 0.0
RNA3D/Attic/images/ 22 (0.1%) 0 (0.0%) 0.0
RNA3D/Attic/data/ 5 (0.0%) 0 (0.0%) 0.0
PGT/xslt/ 1 (0.0%) 0 (0.0%) 0.0
PERL_SCRIPTS/ 4 (0.0%) 0 (0.0%) 0.0
NIELS_F77/ 13 (0.0%) 0 (0.0%) 0.0
JAVALIB/ 1 (0.0%) 0 (0.0%) 0.0
GDEHELP/PHYLIP/ 42 (0.1%) 0 (0.0%) 0.0
GDE/TREEPUZZLE/data/ 5 (0.0%) 0 (0.0%) 0.0
GDE/SATIVA/sativa/epac/ 1 (0.0%) 0 (0.0%) 0.0
GDE/PHYML20130708/phyml/bin/ 2 (0.0%) 0 (0.0%) 0.0
GDE/MOLPHY/utl/ 42 (0.1%) 0 (0.0%) 0.0
DUMMYINC/ 1 (0.0%) 0 (0.0%) 0.0
BERGEY/ 1 (0.0%) 0 (0.0%) 0.0

Activity of westram

Most Recent Commits

westram 2020-10-19 12:14 Rev.: 18607


* partial merge from 'stable' into 'trunk'
* adds: [18606/branches/stable] (#830)

2 lines of code changed in 1 file:

  • GDE/MUSCLE/src: subfams.cpp (+2 -2)
westram 2020-10-06 11:26 Rev.: 18602


* advice howto mark first occurrences (of found duplicates)

3 lines of code changed in 1 file:

  • HELP_SOURCE/oldhelp: search_duplicates.hlp (+3)
westram 2020-10-05 16:27 Rev.: 18601


* clear error exported from {{{gbt_nonexisting_alignment}}}
- made case-only rename fail in DEBUG mode.

6 lines of code changed in 1 file:

  • ARBDB: adali.cxx (+6)
westram 2020-10-05 16:26 Rev.: 18600


* copy source alignment name (fixes #829).

4 lines of code changed in 1 file:

  • SL/ALILINK: AdminGui.cxx (+4 -3)
westram 2020-10-05 16:24 Rev.: 18599


* fix parameters of {{{GBT_rename_alignment}}} + {{{gbt_rename_alignment_of_item}}}
- rename.
- change to bool.
- callers use bool.

19 lines of code changed in 4 files:

  • ARBDB: ad_t_prot.h (+1 -1), adali.cxx (+12 -12)
  • MERGE: MG_species.cxx (+1 -1)
  • SL/ALILINK: AdminGui.cxx (+5 -2)
westram 2020-10-05 16:21 Rev.: 18598


* detect attempt to ''copy'' to alignment which differs from source only in case.

13 lines of code changed in 1 file:

  • ARBDB: adali.cxx (+13 -7)
westram 2020-09-23 13:48 Rev.: 18481


* set "TAB separated" as default NDS column delimiter.
- rename AWAR to reset properties in userland.

4 lines of code changed in 1 file:

  • NTREE: NT_extern.cxx (+4 -4)
westram 2020-09-23 13:46 Rev.: 18480


* mention problems with 'Space padded'-column-style in documentation.

8 lines of code changed in 1 file:

  • HELP_SOURCE/oldhelp: arb_export_nds.hlp (+8 -3)
westram 2020-09-23 13:42 Rev.: 18479


* while saving space-padded CSV file: do not print leading space.
* improve some comments.

8 lines of code changed in 1 file:

  • SL/NDS: nds.cxx (+8 -7)
westram 2020-09-23 13:39 Rev.: 18478


* mark other scripts that might need "eval vs. die-catcher" fixes.

3 lines of code changed in 3 files:

  • PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+1 -1)
  • PERL_SCRIPTS/GENOME: collect_gene_info.pl (+1 -1)
  • PERL_SCRIPTS/MACROS: with_all_marked.pl (+1 -1)
westram 2020-09-23 13:37 Rev.: 18477


* do not abort if species lacks index-field.
* count + report ambiguous hits.

8 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+8 -4)
westram 2020-09-23 13:34 Rev.: 18476


* provide perl function {{{ARB::set_inGlobalEvalState}}}.
* use it to inform {{{ARB.pm}}} that {{{import_from_table.pl}}} uses eval (and does not like to get aborted).

21 lines of code changed in 2 files:

  • PERL2ARB: ARB.pm (+18 -3)
  • PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+3 -6)
westram 2020-09-04 10:33 Rev.: 18475


* DRY base counter test (and empty data warning).

18 lines of code changed in 2 files:

  • GENOM_IMPORT: Importer.cxx (+16 -15), Importer.h (+2)
westram 2020-09-04 10:32 Rev.: 18474


* extra warning if sequence data of genome flat file is empty (EMBL+genebank).

10 lines of code changed in 1 file:

  • GENOM_IMPORT: Importer.cxx (+10 -2)
westram 2020-09-04 10:31 Rev.: 18473


* support genebank entry "DBLINK"
- store in arb field 'db_xref'.

6 lines of code changed in 2 files:

  • GENOM_IMPORT: Importer.cxx (+5 -4)
  • HELP_SOURCE/oldhelp: sp_info.hlp (+1 -1)
westram 2020-09-04 10:28 Rev.: 18472


* do not append empty lines from wrapped tag content
- genebank only
- embl has strictly defined formatting of wrapped content

4 lines of code changed in 1 file:

  • GENOM_IMPORT: Importer.cxx (+4 -2)
westram 2020-09-04 10:26 Rev.: 18471


* accept uncommon indentation occurring in genebank flat files
- remove assertion failures for wrapped lines starting behind column 12.

3 lines of code changed in 1 file:

  • GENOM_IMPORT: Importer.cxx (+3 -3)
westram 2020-07-23 17:33 Rev.: 18470


* also check inconsistencies on top-level.
* ensure listed inconsistencies contain no duplicates.

15 lines of code changed in 1 file:

  • PERL_SCRIPTS/SPECIES: clone_taxonomy.pl (+15 -9)
westram 2020-07-23 16:28 Rev.: 18469


* separate configure section.
* do not list correct genera by default (via configure section).
* track + log tax entries with invalid number of hierarchy levels.
* log inconsistencies in tax hierarchy.
- logs inconsistencies for invalid tax entries (via configure section).

72 lines of code changed in 1 file:

  • PERL_SCRIPTS/SPECIES: clone_taxonomy.pl (+72 -12)
westram 2020-07-16 13:37 Rev.: 18468


* optionally
- dump statistic about taxonomy.
- perform statistic only on marked.

100 lines of code changed in 1 file:

  • PERL_SCRIPTS/SPECIES: clone_taxonomy.pl (+100 -20)

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