/trunk Developers: westram

Login name:
westram
Total Commits:
41,274 (86.8%)
Lines of Code:
1,184,567 (47.6%)
Most Recent Commit:
2020-05-27 12:15
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Activity in Directories

Directory Changes Lines of Code Lines per Change
Totals 41274 (100.0%) 1184567 (100.0%) 28.7
ARBDB/ 3846 (9.3%) 119526 (10.1%) 31.0
lib/nas/ 30 (0.1%) 66561 (5.6%) 2218.7
GDE/PHYLIP/ 146 (0.4%) 56082 (4.7%) 384.1
WINDOW/ 2583 (6.3%) 55362 (4.7%) 21.4
AWT/ 2188 (5.3%) 48866 (4.1%) 22.3
UNIT_TESTER/run/display/ 184 (0.4%) 46525 (3.9%) 252.8
NTREE/ 2444 (5.9%) 46065 (3.9%) 18.8
EDIT4/ 2366 (5.7%) 43272 (3.7%) 18.2
HELP_SOURCE/oldhelp/ 1844 (4.5%) 36382 (3.1%) 19.7
CONVERTALN/ 458 (1.1%) 29082 (2.5%) 63.4
UNIT_TESTER/run/ 128 (0.3%) 27930 (2.4%) 218.2
TOOLS/ 704 (1.7%) 23189 (2.0%) 32.9
GDE/PHYLIP/doc/ 42 (0.1%) 21478 (1.8%) 511.3
GENOM_IMPORT/ 379 (0.9%) 19946 (1.7%) 52.6
PARSIMONY/ 735 (1.8%) 18984 (1.6%) 25.8
PROBE/ 680 (1.6%) 18843 (1.6%) 27.7
DIST/ 729 (1.8%) 17310 (1.5%) 23.7
SOURCE_TOOLS/ 772 (1.9%) 15373 (1.3%) 19.9
GDE/PHYML/ 31 (0.1%) 15188 (1.3%) 489.9
/ 1013 (2.5%) 14423 (1.2%) 14.2
GENOM/ 871 (2.1%) 14171 (1.2%) 16.2
MERGE/ 701 (1.7%) 13858 (1.2%) 19.7
SECEDIT/ 577 (1.4%) 13438 (1.1%) 23.2
GDE/PHYML20130708/phyml/ 9 (0.0%) 13410 (1.1%) 1490.0
SL/FAST_ALIGNER/ 297 (0.7%) 12383 (1.0%) 41.6
lib/ 59 (0.1%) 12300 (1.0%) 208.4
ARB_GDE/ 573 (1.4%) 11647 (1.0%) 20.3
PROBE_DESIGN/ 485 (1.2%) 10564 (0.9%) 21.7
CORE/ 517 (1.3%) 10323 (0.9%) 19.9
SL/TREEDISP/ 477 (1.2%) 10061 (0.8%) 21.0
TEMPLATES/ 307 (0.7%) 9246 (0.8%) 30.1
NALIGNER/ 353 (0.9%) 9226 (0.8%) 26.1
UNIT_TESTER/ 519 (1.3%) 9140 (0.8%) 17.6
MULTI_PROBE/ 530 (1.3%) 9064 (0.8%) 17.1
ptpan/ 128 (0.3%) 8692 (0.7%) 67.9
lib/pictures/ 407 (1.0%) 8554 (0.7%) 21.0
PROBE_WEB/CLIENT/ 267 (0.6%) 8512 (0.7%) 31.8
AWTI/ 373 (0.9%) 7958 (0.7%) 21.3
GDE/FASTDNAML/ 37 (0.1%) 7391 (0.6%) 199.7
AWTC/ 349 (0.8%) 6988 (0.6%) 20.0
PRIMER_DESIGN/ 281 (0.7%) 6874 (0.6%) 24.4
AISC/ 199 (0.5%) 6857 (0.6%) 34.4
EISPACK/ 16 (0.0%) 6736 (0.6%) 421.0
GDE/RAxML/ 61 (0.1%) 6650 (0.6%) 109.0
GDE/AxML/ 17 (0.0%) 6003 (0.5%) 353.1
lib/import/ 211 (0.5%) 5908 (0.5%) 28.0
HELP_SOURCE/ 218 (0.5%) 5664 (0.5%) 25.9
PHYLO/ 399 (1.0%) 4756 (0.4%) 11.9
ALIV3/ 174 (0.4%) 4669 (0.4%) 26.8
UNIT_TESTER/run/impexp/ 50 (0.1%) 4434 (0.4%) 88.6
CONSENSUS_TREE/ 311 (0.8%) 4411 (0.4%) 14.1
PROBE_SERVER/PROBE_GROUP/ 91 (0.2%) 4351 (0.4%) 47.8
PROBE_SET/ 307 (0.7%) 4323 (0.4%) 14.0
AISC_COM/C/ 280 (0.7%) 4058 (0.3%) 14.4
STAT/ 266 (0.6%) 3842 (0.3%) 14.4
ISLAND_HOPPING/ 132 (0.3%) 3810 (0.3%) 28.8
lib/pixmaps/ 302 (0.7%) 3582 (0.3%) 11.8
AISC_MKPTPS/ 108 (0.3%) 3567 (0.3%) 33.0
AISC_COM/AISC/ 108 (0.3%) 3467 (0.3%) 32.1
GDE/CLUSTALW/ 41 (0.1%) 3373 (0.3%) 82.2
RNA3D/ 298 (0.7%) 3358 (0.3%) 11.2
ARBDBPP/ 72 (0.2%) 2998 (0.3%) 41.6
SH/ 165 (0.4%) 2980 (0.3%) 18.0
SL/DB_QUERY/ 163 (0.4%) 2955 (0.2%) 18.1
lib/addlibs/ 13 (0.0%) 2859 (0.2%) 219.9
EDIT/ 91 (0.2%) 2810 (0.2%) 30.8
GDEHELP/MENUS/ 240 (0.6%) 2635 (0.2%) 10.9
GDE/MOLPHY/ 105 (0.3%) 2531 (0.2%) 24.1
SEQ_QUALITY/ 232 (0.6%) 2516 (0.2%) 10.8
PGT/ 178 (0.4%) 2495 (0.2%) 14.0
lib/import/nonformats/ 19 (0.0%) 2340 (0.2%) 123.1
UNIT_TESTER/run/consense/3/ 11 (0.0%) 2336 (0.2%) 212.3
lib/pictures/edit4/ 45 (0.1%) 2300 (0.2%) 51.1
SL/AP_TREE/ 148 (0.4%) 2287 (0.2%) 15.4
ALEIO/ 53 (0.1%) 2265 (0.2%) 42.7
PROBE_SERVER/PROBE_GROUP_DESIGN/ 46 (0.1%) 2253 (0.2%) 48.9
SL/DB_SCANNER/ 131 (0.3%) 2236 (0.2%) 17.0
util/ 209 (0.5%) 2232 (0.2%) 10.6
SL/PRONUC/ 122 (0.3%) 2217 (0.2%) 18.1
RNACMA/ 73 (0.2%) 2178 (0.2%) 29.8
GL/glAW/ 72 (0.2%) 2108 (0.2%) 29.2
NAMES/ 120 (0.3%) 2062 (0.2%) 17.1
SL/ALILINK/ 32 (0.1%) 2061 (0.2%) 64.4
READSEQ/ 34 (0.1%) 2002 (0.2%) 58.8
lib/pixmaps/unused/ 147 (0.4%) 1993 (0.2%) 13.5
SL/TREE_READ/ 91 (0.2%) 1991 (0.2%) 21.8
SL/AW_NAME/ 168 (0.4%) 1822 (0.2%) 10.8
PROBE_SERVER/ 85 (0.2%) 1809 (0.2%) 21.2
lib/pictures/consensus/ 13 (0.0%) 1667 (0.1%) 128.2
ORS_CGI/ 55 (0.1%) 1633 (0.1%) 29.6
SL/SEQIO/ 74 (0.2%) 1620 (0.1%) 21.8
SL/DB_UI/ 121 (0.3%) 1570 (0.1%) 12.9
GL/glpng/ 36 (0.1%) 1552 (0.1%) 43.1
SL/HELIX/ 94 (0.2%) 1509 (0.1%) 16.0
PERL2ARB/ 149 (0.4%) 1471 (0.1%) 9.8
UNIT_TESTER/run/consense/2/ 13 (0.0%) 1468 (0.1%) 112.9
SL/ITEMS/ 114 (0.3%) 1450 (0.1%) 12.7
PROBE_SERVER/WORKER/ 33 (0.1%) 1432 (0.1%) 43.3
SL/GUI_ALIVIEW/ 157 (0.4%) 1403 (0.1%) 8.9
SERVERCNTRL/ 126 (0.3%) 1394 (0.1%) 11.0
lib/pictures/awt/ 75 (0.2%) 1360 (0.1%) 18.1
TEST/ 40 (0.1%) 1327 (0.1%) 33.1
ARBDB2/ 29 (0.1%) 1309 (0.1%) 45.1
SL/CB/ 46 (0.1%) 1288 (0.1%) 28.0
TRS/ 37 (0.1%) 1279 (0.1%) 34.5
lib/pictures/merge/ 48 (0.1%) 1214 (0.1%) 25.2
lib/pixmaps/pgt/ 43 (0.1%) 1199 (0.1%) 27.8
ARBDB_COMPRESS/ 30 (0.1%) 1197 (0.1%) 39.9
GDE/CORE/ 94 (0.2%) 1193 (0.1%) 12.6
SEER/ 41 (0.1%) 1115 (0.1%) 27.1
GDEHELP/ 129 (0.3%) 1098 (0.1%) 8.5
XML/ 70 (0.2%) 1063 (0.1%) 15.1
SL/SEQUENCE/ 136 (0.3%) 995 (0.1%) 7.3
SL/NDS/ 79 (0.2%) 954 (0.1%) 12.0
PROBE_COM/ 98 (0.2%) 912 (0.1%) 9.3
TREE_COMPRESS/ 9 (0.0%) 909 (0.1%) 101.0
SL/TREE_WRITE/ 81 (0.2%) 879 (0.1%) 10.8
ARBDBS/ 29 (0.1%) 850 (0.1%) 29.3
UNIT_TESTER/run/consense/1/ 17 (0.0%) 813 (0.1%) 47.8
SL/GROUP_SEARCH/ 20 (0.0%) 783 (0.1%) 39.1
GDE/MOLPHY/doc/ 4 (0.0%) 758 (0.1%) 189.5
SL/LOCATION/ 29 (0.1%) 754 (0.1%) 26.0
PERL_SCRIPTS/ARBTOOLS/ 14 (0.0%) 731 (0.1%) 52.2
TREEGEN/ 123 (0.3%) 701 (0.1%) 5.6
DBSERVER/ 67 (0.2%) 695 (0.1%) 10.3
SL/FILTER/ 68 (0.2%) 692 (0.1%) 10.1
lib/macros/.checks/ 3 (0.0%) 675 (0.1%) 225.0
lib/pixmaps/icons/unused/ 32 (0.1%) 662 (0.1%) 20.6
SL/AW_HELIX/ 72 (0.2%) 657 (0.1%) 9.1
lib/pixmaps/edit/ 72 (0.2%) 632 (0.1%) 8.7
UNIT_TESTER/run/pars/ 52 (0.1%) 597 (0.1%) 11.4
PERL_SCRIPTS/SPECIES/ 24 (0.1%) 591 (0.0%) 24.6
UNIT_TESTER/run/help/ 7 (0.0%) 584 (0.0%) 83.4
ORS_SERVER/ 33 (0.1%) 580 (0.0%) 17.5
PROBE_SERVER/TREE_MERGE/ 14 (0.0%) 572 (0.0%) 40.8
PERL_SCRIPTS/MAUS/ 11 (0.0%) 549 (0.0%) 49.9
GDE/MUSCLE/src/unused/ 3 (0.0%) 548 (0.0%) 182.6
PROBE_WEB/SERVER/ 43 (0.1%) 523 (0.0%) 12.1
UNIT_TESTER/run/xsub/ 5 (0.0%) 511 (0.0%) 102.2
SOURCE_TOOLS/release/ 15 (0.0%) 507 (0.0%) 33.8
UNIT_TESTER/run/tools/ 44 (0.1%) 499 (0.0%) 11.3
SL/FILE_BUFFER/ 43 (0.1%) 495 (0.0%) 11.5
GDE/SUPPORT/ 26 (0.1%) 494 (0.0%) 19.0
PERL_SCRIPTS/GENOME/ 15 (0.0%) 478 (0.0%) 31.8
SL/REGEXPR/ 47 (0.1%) 473 (0.0%) 10.0
lib/pixmaps/edit/unused/ 48 (0.1%) 469 (0.0%) 9.7
GDE/RAxML8/ 10 (0.0%) 469 (0.0%) 46.9
lib/pictures/unused/ 11 (0.0%) 462 (0.0%) 42.0
NAMES_COM/ 70 (0.2%) 457 (0.0%) 6.5
lib/submit/ 2 (0.0%) 446 (0.0%) 223.0
lib/inputMasks/ 25 (0.1%) 436 (0.0%) 17.4
GDEHELP/HELP_WRITTEN/ 15 (0.0%) 431 (0.0%) 28.7
GDE/HGL_SRC/ 27 (0.1%) 418 (0.0%) 15.4
SL/MACROS/ 71 (0.2%) 401 (0.0%) 5.6
SL/TREE_ADMIN/ 34 (0.1%) 396 (0.0%) 11.6
SL/ARB_TREE/ 81 (0.2%) 396 (0.0%) 4.8
GDEHELP/HELP_PLAIN/ 11 (0.0%) 371 (0.0%) 33.7
lib/pictures/faligner/ 16 (0.0%) 369 (0.0%) 23.0
bin/ 28 (0.1%) 357 (0.0%) 12.7
SL/ROOTED_TREE/ 17 (0.0%) 350 (0.0%) 20.5
SL/NEIGHBOURJOIN/ 58 (0.1%) 350 (0.0%) 6.0
lib/pictures/pars/ 7 (0.0%) 335 (0.0%) 47.8
lib/pictures/query/ 17 (0.0%) 332 (0.0%) 19.5
SL/MATRIX/ 50 (0.1%) 326 (0.0%) 6.5
SL/PTCLEAN/ 39 (0.1%) 323 (0.0%) 8.2
TESTAWT/ 17 (0.0%) 317 (0.0%) 18.6
lib/pixmaps/icons/ 17 (0.0%) 310 (0.0%) 18.2
TESTVECTORFONT/ 15 (0.0%) 307 (0.0%) 20.4
lib/pictures/awtc/ 17 (0.0%) 305 (0.0%) 17.9
CAT/ 20 (0.0%) 300 (0.0%) 15.0
lib/pixmaps/merge/ 7 (0.0%) 295 (0.0%) 42.1
lib/pixmaps/print/ 20 (0.0%) 281 (0.0%) 14.0
HELP_SOURCE/genhelp/ 23 (0.1%) 267 (0.0%) 11.6
GDE/ 45 (0.1%) 258 (0.0%) 5.7
BUGEX/ 11 (0.0%) 250 (0.0%) 22.7
PERL_SCRIPTS/test/ 18 (0.0%) 239 (0.0%) 13.2
PERL_SCRIPTS/ARBTOOLS/IFTHELP/ 16 (0.0%) 237 (0.0%) 14.8
SL/CONSENSUS/ 17 (0.0%) 225 (0.0%) 13.2
SL/ 40 (0.1%) 212 (0.0%) 5.3
HEADERLIBS/ 11 (0.0%) 210 (0.0%) 19.0
SL/REFENTRIES/ 42 (0.1%) 204 (0.0%) 4.8
GDE/MrBAYES/mrbayes_3.2.1/ 7 (0.0%) 194 (0.0%) 27.7
lib/macros/ 26 (0.1%) 188 (0.0%) 7.2
BINDEP/ 45 (0.1%) 187 (0.0%) 4.1
GDE/CLUSTAL/ 24 (0.1%) 184 (0.0%) 7.6
UNIT_TESTER/valgrind/ 5 (0.0%) 182 (0.0%) 36.4
AISC_COM/ 9 (0.0%) 182 (0.0%) 20.2
SL/INSDEL/ 38 (0.1%) 180 (0.0%) 4.7
PERLTOOLS/ 44 (0.1%) 180 (0.0%) 4.0
SL/TRANSLATE/ 39 (0.1%) 177 (0.0%) 4.5
SL/ITEM_SHADER/ 38 (0.1%) 173 (0.0%) 4.5
PERL_SCRIPTS/SAI/ 5 (0.0%) 163 (0.0%) 32.6
CHIP/ 29 (0.1%) 160 (0.0%) 5.5
WETC/ 54 (0.1%) 158 (0.0%) 2.9
SOURCE_TOOLS/COMPILE_COMPAT/ 14 (0.0%) 154 (0.0%) 11.0
GDE/TREEPUZZLE/ 28 (0.1%) 154 (0.0%) 5.5
GDE/LOOPTOOL/ 26 (0.1%) 152 (0.0%) 5.8
lib/export/ 43 (0.1%) 145 (0.0%) 3.3
lib/pictures/cpro/ 6 (0.0%) 143 (0.0%) 23.8
lib/sellists/ 28 (0.1%) 139 (0.0%) 4.9
lib/pixmaps/print/unused/ 8 (0.0%) 138 (0.0%) 17.2
SL/XFERGUI/ 5 (0.0%) 136 (0.0%) 27.2
UNIT_TESTER/run/general/ 12 (0.0%) 134 (0.0%) 11.1
lib/macros/ARB/SEQ_DATA/ 4 (0.0%) 127 (0.0%) 31.7
PERL_SCRIPTS/BIOPERL/ 3 (0.0%) 123 (0.0%) 41.0
lib/pictures/phylo/ 9 (0.0%) 118 (0.0%) 13.1
GDE/TREEPUZZLE/src/ 14 (0.0%) 113 (0.0%) 8.0
lib/dtd/ 8 (0.0%) 111 (0.0%) 13.8
GL/ 14 (0.0%) 110 (0.0%) 7.8
AWDEMO/ 18 (0.0%) 107 (0.0%) 5.9
PERL_SCRIPTS/GENERAL/ 1 (0.0%) 99 (0.0%) 99.0
SL/FILTSEQEXP/ 16 (0.0%) 94 (0.0%) 5.8
ARBDB/EXAMPLES/ 19 (0.0%) 89 (0.0%) 4.6
PERL_SCRIPTS/lib/ 2 (0.0%) 80 (0.0%) 40.0
SOURCE_TOOLS/docs/ 1 (0.0%) 79 (0.0%) 79.0
PERL_SCRIPTS/ARBTOOLS/TESTS/ 2 (0.0%) 78 (0.0%) 39.0
GDE/PHYML20130708/ 11 (0.0%) 74 (0.0%) 6.7
lib/BUGS/ 5 (0.0%) 71 (0.0%) 14.2
SL/QUERY/ 14 (0.0%) 71 (0.0%) 5.0
ORS_COM/ 23 (0.1%) 66 (0.0%) 2.8
UNIT_TESTER/run/consense/4/ 6 (0.0%) 61 (0.0%) 10.1
lib/motifHack/ 8 (0.0%) 56 (0.0%) 7.0
SL/ALIVIEW/ 29 (0.1%) 54 (0.0%) 1.8
XML_IMPORT/IMP_TREE/ 36 (0.1%) 53 (0.0%) 1.4
XML_IMPORT/ 12 (0.0%) 47 (0.0%) 3.9
PROBE_WEB/ 4 (0.0%) 46 (0.0%) 11.5
lib/pictures/window/ 3 (0.0%) 45 (0.0%) 15.0
GDE/MAFFT/ 6 (0.0%) 43 (0.0%) 7.1
UNIT_TESTER/run/pvp/ 8 (0.0%) 41 (0.0%) 5.1
lib/arb_default/ 19 (0.0%) 40 (0.0%) 2.1
etc/ 11 (0.0%) 38 (0.0%) 3.4
GDE/MrBAYES/ 5 (0.0%) 37 (0.0%) 7.4
SL/XFERSET/ 10 (0.0%) 36 (0.0%) 3.6
GDE/MAFFT/mafft-7.055-with-extensions/core/ 2 (0.0%) 35 (0.0%) 17.5
PERL_SCRIPTS/ARBTOOLS/DOCUMENTED/ 3 (0.0%) 33 (0.0%) 11.0
GDE/MAFFT/mafft-7.053-without-extensions/ 1 (0.0%) 33 (0.0%) 33.0
RNA3D/Attic/OPENGL/ 14 (0.0%) 32 (0.0%) 2.2
HELP_SOURCE/oldhelp/prompt/ 2 (0.0%) 32 (0.0%) 16.0
PERL_SCRIPTS/ACI/ 1 (0.0%) 30 (0.0%) 30.0
HELP_SOURCE/oldhelp/seer/ 15 (0.0%) 30 (0.0%) 2.0
GDE/MUSCLE/ 5 (0.0%) 30 (0.0%) 6.0
UNIT_TESTER/run/trees/ 1 (0.0%) 27 (0.0%) 27.0
UNIT_TESTER/run/consense/6/ 2 (0.0%) 26 (0.0%) 13.0
lib/gde/ 3 (0.0%) 23 (0.0%) 7.6
UNIT_TESTER/run/distance/ 6 (0.0%) 19 (0.0%) 3.1
PERL_SCRIPTS/IFTHELP/ 10 (0.0%) 18 (0.0%) 1.8
GDE/FASTTREE/ 5 (0.0%) 18 (0.0%) 3.6
SL/PVP/ 5 (0.0%) 14 (0.0%) 2.8
doc/ 2 (0.0%) 11 (0.0%) 5.5
GDE/SATIVA/ 6 (0.0%) 11 (0.0%) 1.8
GDE/PROBCONS/ 3 (0.0%) 10 (0.0%) 3.3
GDE/TREEPUZZLE/doc/ 5 (0.0%) 9 (0.0%) 1.8
GDEHELP/DATA_FILES/ 2 (0.0%) 8 (0.0%) 4.0
UNIT_TESTER/sockets/ 3 (0.0%) 7 (0.0%) 2.3
GDE/PROBCONS/probcons/ 3 (0.0%) 7 (0.0%) 2.3
lib/pictures/unused/findcorr/ 27 (0.1%) 5 (0.0%) 0.1
BINDINGS/ 5 (0.0%) 5 (0.0%) 1.0
fig2dev/dev/ 62 (0.2%) 4 (0.0%) 0.0
fig2dev/ 68 (0.2%) 4 (0.0%) 0.0
UNIT_TESTER/run/diff/ 8 (0.0%) 4 (0.0%) 0.5
GDE/PHYML20130708/phyml/src/ 2 (0.0%) 4 (0.0%) 2.0
GDE/MAFFT/mafft-7.055-with-extensions/extensions/mxscarna_src/ 2 (0.0%) 4 (0.0%) 2.0
SL/SAICALC/ 7 (0.0%) 2 (0.0%) 0.2
GDE/MAFFT/mafft-7.055-with-extensions/extensions/ 2 (0.0%) 2 (0.0%) 1.0
GDE/MAFFT/mafft-7.055-with-extensions/ 3 (0.0%) 2 (0.0%) 0.6
lib/motifHack/pixmaps/ 3 (0.0%) 1 (0.0%) 0.3
UNIT_TESTER/run/homefake/.arb_prop/ 1 (0.0%) 1 (0.0%) 1.0
UNIT_TESTER/run/fakehome/ 2 (0.0%) 1 (0.0%) 0.5
UNIT_TESTER/flags/ 2 (0.0%) 1 (0.0%) 0.5
PERL_SCRIPTS/MACROS/ 3 (0.0%) 1 (0.0%) 0.3
GDE/MUSCLE/src/ 4 (0.0%) 1 (0.0%) 0.2
lib/rna3d/images/ 44 (0.1%) 0 (0.0%) 0.0
lib/rna3d/ 2 (0.0%) 0 (0.0%) 0.0
lib/pixmaps/seer/ 3 (0.0%) 0 (0.0%) 0.0
lib/pictures/unused/demo/ 27 (0.1%) 0 (0.0%) 0.0
lib/pictures/seer/ 5 (0.0%) 0 (0.0%) 0.0
lib/pictures/findcorr/ 20 (0.0%) 0 (0.0%) 0.0
lib/pictures/etc/ 1 (0.0%) 0 (0.0%) 0.0
lib/pictures/demo/ 27 (0.1%) 0 (0.0%) 0.0
lib/pictures/PARS/ 1 (0.0%) 0 (0.0%) 0.0
lib/icons/ 2 (0.0%) 0 (0.0%) 0.0
RNA3D/Attic/images/ 22 (0.1%) 0 (0.0%) 0.0
RNA3D/Attic/data/ 5 (0.0%) 0 (0.0%) 0.0
PGT/xslt/ 1 (0.0%) 0 (0.0%) 0.0
PERL_SCRIPTS/ 4 (0.0%) 0 (0.0%) 0.0
NIELS_F77/ 13 (0.0%) 0 (0.0%) 0.0
JAVALIB/ 1 (0.0%) 0 (0.0%) 0.0
GDEHELP/PHYLIP/ 42 (0.1%) 0 (0.0%) 0.0
GDE/TREEPUZZLE/data/ 5 (0.0%) 0 (0.0%) 0.0
GDE/SATIVA/sativa/epac/ 1 (0.0%) 0 (0.0%) 0.0
GDE/PHYML20130708/phyml/bin/ 2 (0.0%) 0 (0.0%) 0.0
GDE/MOLPHY/utl/ 42 (0.1%) 0 (0.0%) 0.0
DUMMYINC/ 1 (0.0%) 0 (0.0%) 0.0
BERGEY/ 1 (0.0%) 0 (0.0%) 0.0

Activity of westram

Most Recent Commits

westram 2020-05-27 12:15 Rev.: 18465


* arb_export_newick
- stuff two leaks
- todo

14 lines of code changed in 1 file:

  • TOOLS: arb_export_newick.cxx (+14 -11)
westram 2020-05-14 19:21 Rev.: 18463


* reintegrates 'top' into 'trunk'
* adds: log:branches/top@18453:18462

109 lines of code changed in 20 files:

  • ARBDB: ad_config.h (+4 -4), adname.cxx (+3 -3)
  • EDIT4: ED4_cursor.cxx (+3 -3), ED4_main.cxx (+7 -16), ED4_no_class.cxx (+1 -1), ED4_root.cxx (+5 -6), EDB_root_bact.cxx (+6 -48), config_beschr.txt (del), ed4_class.hxx (+1 -7)
  • HELP_SOURCE/oldhelp: ad_extended.hlp (+5 -2), e4.hlp (+3), species_configs_saveload.hlp (+2 -1)
  • NTREE: NT_edconf.cxx (+31 -17), NT_extern.cxx (+2), NT_local.h (+1), ad_ext.cxx (+3)
  • SL/HELIX: BI_basepos.cxx (+3 -1), BI_helix.cxx (+3 -1)
  • WINDOW: AW_question.cxx (+1 -1)
  • lib/pictures: ad_ext.fig (+25 -22)
westram 2020-05-13 10:56 Rev.: 18452


* bugfix #828
- act on mouse release (instead of click)

25 lines of code changed in 1 file:

  • SECEDIT: SEC_graphic.cxx (+25 -26)
westram 2020-04-28 17:42 Rev.: 18450


* ED4_work_info:
- use auto instance in executeKeystroke().
- move -> ed4_edit_string.hxx
- pass down parent workinfo const into call_edit().

61 lines of code changed in 3 files:

  • EDIT4: ED4_no_class.cxx (+35 -36), ed4_defs.hxx (-26), ed4_edit_string.hxx (+26 -3)
westram 2020-04-28 17:29 Rev.: 18449


* ED4_Edit_String:
- make members private.
- fix ctor (elim memset initialization).

17 lines of code changed in 2 files:

  • EDIT4: ED4_edit_string.cxx (+9 -3), ed4_edit_string.hxx (+8 -5)
westram 2020-04-28 17:27 Rev.: 18448


* ED4_Edit_String:
- remove unneeded global instance.
- use automatic instances.
- remove init_edit().

10 lines of code changed in 5 files:

  • EDIT4: ED4_edit_string.cxx (-9), ED4_no_class.cxx (+10 -12), ED4_root.cxx (-1), ed4_class.hxx (-2), ed4_edit_string.hxx (-1)
westram 2020-04-28 17:23 Rev.: 18447


* cosmetic + todos.

16 lines of code changed in 4 files:

  • EDIT4: ED4_edit_string.cxx (+1 -1), ED4_no_class.cxx (+2 -1), ed4_defs.hxx (+5 -5), ed4_edit_string.hxx (+8 -7)
westram 2020-04-28 10:42 Rev.: 18446


* document key bindings for paging.
* show howto handle undefined result from remote_read_awar.

10 lines of code changed in 2 files:

  • HELP_SOURCE/oldhelp: e4.hlp (+9), macro.hlp (+1)
westram 2020-04-25 20:18 Rev.: 18445


* implement page up/down functionality for edit4
- {{{PgUp}}}/{{{PgDown}}} scrolls half page up/down
- pages horizontally when used together with ALT

16 lines of code changed in 1 file:

  • EDIT4: ED4_no_class.cxx (+16 -1)
westram 2020-04-25 20:08 Rev.: 18444


* ed4_scroll() can ignore scrollspeed (from awar).

10 lines of code changed in 1 file:

  • EDIT4: ED4_no_class.cxx (+10 -5)
westram 2020-04-25 20:06 Rev.: 18443


* code move only.

61 lines of code changed in 1 file:

  • EDIT4: ED4_no_class.cxx (+61 -61)
westram 2020-04-25 20:04 Rev.: 18442


* add keycodes for paging up+down.

11 lines of code changed in 2 files:

  • WINDOW: AW_xkey.cxx (+9 -7), aw_keysym.hxx (+2)
westram 2020-04-23 10:58 Rev.: 18441


* use trap exit.
* deny some characters in installation path (e.g. spaces, quotes or backticks).

17 lines of code changed in 1 file:

  • arb_install.sh (+17 -3)
westram 2020-04-22 15:46 Rev.: 18440


* warn if any path used in ARB does contain spaces (too error-prone)
- added helper functions into CORE
- warn about unwanted chars
* in result from getenv_executable(), getenv_existing_directory(), getenv_autodirectory(), GB_find_executable().
* in path of sina executable and of pigz used in ARB_zfopen().

79 lines of code changed in 5 files:

  • ARBDB: adsocket.cxx (+21)
  • CORE: arb_misc.cxx (+30), arb_misc.h (+2), arb_zfile.cxx (+7 -1)
  • EDIT4: graph_aligner_gui.cxx (+19 -11)
westram 2020-04-22 15:36 Rev.: 18439


* improve error exit from script (kill self).
* protect functions vs. wrong use (check param 3 of addpath; deny param 3 for append and prepend).
* quote several expressions (to allow installation paths containing spaces)
- arb is NOT intended to be installed into such paths! see also next commit.

41 lines of code changed in 1 file:

  • SH: arb (+41 -30)
westram 2020-04-06 15:18 Rev.: 18437


* reintegrates 'io' into 'trunk'
* adds: log:branches/io@18428:18436

325 lines of code changed in 8 files:

  • BINDEP: needs_libs.arb_export_newick (new 4)
  • SOURCE_TOOLS: dep.alltargets (+1)
  • TOOLS: Makefile (+33), arb_export_newick.cxx (new 235), arb_test.cxx (+50 -4)
  • UNIT_TESTER: Makefile.test (+1)
  • UNIT_TESTER/run/tools: export_newick.arb (new)
  • bin: .gitignore (+1)
westram 2020-04-01 17:21 Rev.: 18426


* reintegrates 'unittest' into 'trunk'
* adds: log:branches/unittest@18363:18425

7088 lines of code changed in 81 files:

  • Makefile (+152 -60), config.makefile.template (+17 -17)
  • RNACMA: AlignedSequenceLoader.cxx (+86 -78), AlignedSequenceLoader.h (+15 -9), Analyser.cxx (+256 -82), Analyser.h (+5 -3), Makefile (+1 -20), dbconn.cxx (del), dbconn.h (del), needs_libs (+1 -1)
  • SERVERCNTRL: servercntrl.cxx (+2 -2)
  • SL: README (+2 -2)
  • SL/DB_UI: info_window.cxx (+1)
  • SL/LOCATION: Location.cxx (+1 -1)
  • SOURCE_TOOLS: dep.4dummy (+1), dep.alltargets (+2), dep.libtargets (+1), export2sub (-1)
  • UNIT_TESTER: Makefile.test (+30 -2), dumpTestLocations.pl (new 31), dupsymwarn.pl (+8 -1), list_undefined_units.pl (new 76), sym2testcode.pl (+1 -1)
  • UNIT_TESTER/run: TEST_aci.arb (+50 -53), TEST_fields_ascii.arb (+1524 -1525), TEST_gpt_src.arb (+84 -72), TEST_nuc.arb (+542 -543), TEST_nuc_short.arb (new 767), TEST_prot.arb (+1152 -1152), TEST_prot_tiny.arb (+1152 -1152), TEST_pt_src.arb (+172 -172), TEST_realign.arb (+956 -956)
  • XML_IMPORT: Makefile (del), needs_libs (del)
  • XML_IMPORT/IMP_TREE: Makefile (del), MySAXHandler.cxx (del), MySAXHandler.hxx (del), sax2Handler.cxx (del), sax2Handler.hxx (del), testParser.cxx (del), testParser.hxx (del), xmlParser.cxx (del), xmlParser.hxx (del)
  • ptpan: Makefile (del), Makefile.old (del), PTP_buildtree.cxx (del), PTP_etc.cxx (del), PTP_family.cxx (del), PTP_findEx.cxx (del), PTP_io.cxx (del), PTP_main.cxx (del), PTP_match.cxx (del), PTP_new_design.cxx (del), PT_buildtree.cxx (del), PT_cachehandler.cxx (del), PT_etc.cxx (del), PT_family.cxx (del), PT_findEx.cxx (del), PT_hashing.cxx (del), PT_huffman.cxx (del), PT_io.cxx (del), PT_lowlevel.cxx (del), PT_main.cxx (del), PT_match.cxx (del), PT_new_design.cxx (del), PT_treepack.cxx (del), dlist.cxx (del), dlist.h (del), globalprefs.h (del), hooks.cxx (del), hooks.h (del), needs_libs.PROBE_a (del), pd.makefile (del), probe.h (del), probe_debug.cxx (del), pt_manualprotos.h (del), pt_prototypes.h (del), ptp_probe_debug.cxx (del), ptpan.h (del), ptpan_info.txt (del), types.h (del)
westram 2020-03-16 15:33 Rev.: 18389


* devirtualize {{{getLine}}}:
- move {{{getLine}}} -> {{{getLine_intern}}} in {{{CommentSkippingFileBuffer}}}
- mark {{{getLine_intern}}} nonfinal.
* add code pointer to testdata

7 lines of code changed in 2 files:

  • CORE: BufferedFileReader.h (+3 -4)
  • PERLTOOLS: arb_proto_2_xsub.cxx (+4 -2)
westram 2020-03-16 15:29 Rev.: 18388


* fix potential buffer overflow (warned by gcc 7.5.0).

1 lines of code changed in 1 file:

  • GDE/MUSCLE/src: typetostr.cpp (+1 -1)
westram 2020-03-16 15:27 Rev.: 18387


* silence bogus array bounds warning also for gcc 9.3

1 lines of code changed in 1 file:

  • AWT: AWT_input_mask.cxx (+1 -1)

(8620 more)

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