/trunk Developers: westram

Login name:
westram
Total Commits:
42,825 (87.1%)
Lines of Code:
1,190,072 (47.7%)
Most Recent Commit:
2022-05-20 15:34
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Activity in Directories

Directory Changes Lines of Code Lines per Change
Totals 42825 (100.0%) 1190072 (100.0%) 27.7
ARBDB/ 3915 (9.1%) 119975 (10.1%) 30.6
lib/nas/ 30 (0.1%) 66561 (5.6%) 2218.7
GDE/PHYLIP/ 146 (0.3%) 56082 (4.7%) 384.1
WINDOW/ 2639 (6.2%) 55861 (4.7%) 21.1
AWT/ 2219 (5.2%) 48993 (4.1%) 22.0
NTREE/ 2506 (5.9%) 47338 (4.0%) 18.8
UNIT_TESTER/run/display/ 204 (0.5%) 46531 (3.9%) 228.0
EDIT4/ 2410 (5.6%) 43466 (3.7%) 18.0
HELP_SOURCE/oldhelp/ 2246 (5.2%) 30060 (2.5%) 13.3
CONVERTALN/ 463 (1.1%) 29090 (2.4%) 62.8
UNIT_TESTER/run/ 128 (0.3%) 27930 (2.3%) 218.2
TOOLS/ 720 (1.7%) 23283 (2.0%) 32.3
GDE/PHYLIP/doc/ 42 (0.1%) 21478 (1.8%) 511.3
GENOM_IMPORT/ 389 (0.9%) 19995 (1.7%) 51.4
PARSIMONY/ 749 (1.7%) 19017 (1.6%) 25.3
PROBE/ 695 (1.6%) 18877 (1.6%) 27.1
DIST/ 748 (1.7%) 17518 (1.5%) 23.4
SOURCE_TOOLS/ 811 (1.9%) 15729 (1.3%) 19.3
GDE/PHYML/ 32 (0.1%) 15189 (1.3%) 474.6
/ 1061 (2.5%) 14910 (1.3%) 14.0
GENOM/ 883 (2.1%) 14206 (1.2%) 16.0
MERGE/ 722 (1.7%) 14001 (1.2%) 19.3
SECEDIT/ 588 (1.4%) 13487 (1.1%) 22.9
GDE/PHYML20130708/phyml/ 9 (0.0%) 13410 (1.1%) 1490.0
SL/FAST_ALIGNER/ 309 (0.7%) 12473 (1.0%) 40.3
lib/ 60 (0.1%) 12302 (1.0%) 205.0
ARB_GDE/ 591 (1.4%) 11736 (1.0%) 19.8
CORE/ 545 (1.3%) 10696 (0.9%) 19.6
PROBE_DESIGN/ 493 (1.2%) 10601 (0.9%) 21.5
SL/TREEDISP/ 508 (1.2%) 10352 (0.9%) 20.3
TEMPLATES/ 328 (0.8%) 9556 (0.8%) 29.1
NALIGNER/ 358 (0.8%) 9242 (0.8%) 25.8
UNIT_TESTER/ 532 (1.2%) 9183 (0.8%) 17.2
MULTI_PROBE/ 541 (1.3%) 9104 (0.8%) 16.8
ptpan/ 128 (0.3%) 8692 (0.7%) 67.9
lib/pictures/ 414 (1.0%) 8630 (0.7%) 20.8
PROBE_WEB/CLIENT/ 267 (0.6%) 8512 (0.7%) 31.8
AWTI/ 378 (0.9%) 7971 (0.7%) 21.0
GDE/FASTDNAML/ 37 (0.1%) 7391 (0.6%) 199.7
EISPACK/ 20 (0.0%) 7294 (0.6%) 364.7
AWTC/ 356 (0.8%) 7009 (0.6%) 19.6
AISC/ 208 (0.5%) 6893 (0.6%) 33.1
PRIMER_DESIGN/ 290 (0.7%) 6891 (0.6%) 23.7
GDE/RAxML/ 61 (0.1%) 6650 (0.6%) 109.0
GDE/AxML/ 17 (0.0%) 6003 (0.5%) 353.1
CONSENSUS_TREE/ 328 (0.8%) 5967 (0.5%) 18.1
lib/import/ 211 (0.5%) 5908 (0.5%) 28.0
HELP_SOURCE/ 234 (0.5%) 5720 (0.5%) 24.4
PHYLO/ 402 (0.9%) 4766 (0.4%) 11.8
ALIV3/ 174 (0.4%) 4669 (0.4%) 26.8
UNIT_TESTER/run/impexp/ 50 (0.1%) 4434 (0.4%) 88.6
PROBE_SERVER/PROBE_GROUP/ 91 (0.2%) 4351 (0.4%) 47.8
PROBE_SET/ 312 (0.7%) 4330 (0.4%) 13.8
AISC_COM/C/ 283 (0.7%) 4069 (0.3%) 14.3
STAT/ 278 (0.6%) 3879 (0.3%) 13.9
ISLAND_HOPPING/ 136 (0.3%) 3818 (0.3%) 28.0
lib/pixmaps/ 302 (0.7%) 3582 (0.3%) 11.8
AISC_MKPTPS/ 111 (0.3%) 3574 (0.3%) 32.1
AISC_COM/AISC/ 112 (0.3%) 3501 (0.3%) 31.2
RNA3D/ 307 (0.7%) 3378 (0.3%) 11.0
GDE/CLUSTALW/ 41 (0.1%) 3373 (0.3%) 82.2
SH/ 171 (0.4%) 3002 (0.3%) 17.5
ARBDBPP/ 72 (0.2%) 2998 (0.3%) 41.6
SL/DB_QUERY/ 175 (0.4%) 2989 (0.3%) 17.0
GDEHELP/MENUS/ 256 (0.6%) 2925 (0.2%) 11.4
lib/addlibs/ 13 (0.0%) 2859 (0.2%) 219.9
EDIT/ 91 (0.2%) 2810 (0.2%) 30.8
SEQ_QUALITY/ 240 (0.6%) 2532 (0.2%) 10.5
GDE/MOLPHY/ 105 (0.2%) 2531 (0.2%) 24.1
PGT/ 178 (0.4%) 2495 (0.2%) 14.0
PERL2ARB/ 163 (0.4%) 2391 (0.2%) 14.6
lib/import/nonformats/ 19 (0.0%) 2340 (0.2%) 123.1
UNIT_TESTER/run/consense/3/ 11 (0.0%) 2336 (0.2%) 212.3
util/ 222 (0.5%) 2314 (0.2%) 10.4
lib/pictures/edit4/ 45 (0.1%) 2300 (0.2%) 51.1
SL/AP_TREE/ 153 (0.4%) 2298 (0.2%) 15.0
ALEIO/ 53 (0.1%) 2265 (0.2%) 42.7
PROBE_SERVER/PROBE_GROUP_DESIGN/ 46 (0.1%) 2253 (0.2%) 48.9
SL/DB_SCANNER/ 136 (0.3%) 2250 (0.2%) 16.5
SL/PRONUC/ 129 (0.3%) 2226 (0.2%) 17.2
RNACMA/ 81 (0.2%) 2195 (0.2%) 27.0
GL/glAW/ 73 (0.2%) 2109 (0.2%) 28.8
SL/ALILINK/ 36 (0.1%) 2077 (0.2%) 57.6
NAMES/ 123 (0.3%) 2068 (0.2%) 16.8
READSEQ/ 36 (0.1%) 2004 (0.2%) 55.6
SL/TREE_READ/ 96 (0.2%) 1997 (0.2%) 20.8
lib/pixmaps/unused/ 147 (0.3%) 1993 (0.2%) 13.5
SL/AW_NAME/ 179 (0.4%) 1882 (0.2%) 10.5
PROBE_SERVER/ 85 (0.2%) 1809 (0.2%) 21.2
lib/pictures/consensus/ 13 (0.0%) 1667 (0.1%) 128.2
ORS_CGI/ 55 (0.1%) 1633 (0.1%) 29.6
SL/SEQIO/ 79 (0.2%) 1625 (0.1%) 20.5
SL/ITEMS/ 123 (0.3%) 1595 (0.1%) 12.9
SL/DB_UI/ 128 (0.3%) 1590 (0.1%) 12.4
GL/glpng/ 37 (0.1%) 1553 (0.1%) 41.9
SL/HELIX/ 100 (0.2%) 1516 (0.1%) 15.1
UNIT_TESTER/run/consense/2/ 13 (0.0%) 1468 (0.1%) 112.9
PROBE_SERVER/WORKER/ 33 (0.1%) 1432 (0.1%) 43.3
SL/GUI_ALIVIEW/ 168 (0.4%) 1416 (0.1%) 8.4
SERVERCNTRL/ 129 (0.3%) 1400 (0.1%) 10.8
SL/NDS/ 92 (0.2%) 1364 (0.1%) 14.8
lib/pictures/awt/ 75 (0.2%) 1360 (0.1%) 18.1
TEST/ 40 (0.1%) 1327 (0.1%) 33.1
ARBDB2/ 29 (0.1%) 1309 (0.1%) 45.1
SL/CB/ 47 (0.1%) 1289 (0.1%) 27.4
TRS/ 37 (0.1%) 1279 (0.1%) 34.5
GDEHELP/ 145 (0.3%) 1233 (0.1%) 8.5
lib/pictures/merge/ 48 (0.1%) 1214 (0.1%) 25.2
lib/pixmaps/pgt/ 43 (0.1%) 1199 (0.1%) 27.8
ARBDB_COMPRESS/ 30 (0.1%) 1197 (0.1%) 39.9
GDE/CORE/ 94 (0.2%) 1193 (0.1%) 12.6
SEER/ 41 (0.1%) 1115 (0.1%) 27.1
SL/TREE_WRITE/ 94 (0.2%) 1075 (0.1%) 11.4
XML/ 72 (0.2%) 1069 (0.1%) 14.8
PERL_SCRIPTS/SPECIES/ 28 (0.1%) 1020 (0.1%) 36.4
SL/SEQUENCE/ 141 (0.3%) 1003 (0.1%) 7.1
PROBE_COM/ 99 (0.2%) 913 (0.1%) 9.2
TREE_COMPRESS/ 9 (0.0%) 909 (0.1%) 101.0
ARBDBS/ 29 (0.1%) 850 (0.1%) 29.3
UNIT_TESTER/run/consense/1/ 17 (0.0%) 813 (0.1%) 47.8
PERL_SCRIPTS/ARBTOOLS/ 18 (0.0%) 801 (0.1%) 44.5
SL/GROUP_SEARCH/ 22 (0.1%) 785 (0.1%) 35.6
GDE/MOLPHY/doc/ 4 (0.0%) 758 (0.1%) 189.5
SL/LOCATION/ 29 (0.1%) 754 (0.1%) 26.0
TREEGEN/ 126 (0.3%) 706 (0.1%) 5.6
DBSERVER/ 71 (0.2%) 701 (0.1%) 9.8
SL/FILTER/ 70 (0.2%) 696 (0.1%) 9.9
lib/macros/.checks/ 3 (0.0%) 675 (0.1%) 225.0
SL/AW_HELIX/ 78 (0.2%) 663 (0.1%) 8.5
lib/pixmaps/icons/unused/ 32 (0.1%) 662 (0.1%) 20.6
lib/pixmaps/edit/ 72 (0.2%) 632 (0.1%) 8.7
UNIT_TESTER/run/help/ 11 (0.0%) 600 (0.1%) 54.5
UNIT_TESTER/run/pars/ 52 (0.1%) 597 (0.1%) 11.4
ORS_SERVER/ 33 (0.1%) 580 (0.0%) 17.5
GDEHELP/HELP_WRITTEN/ 27 (0.1%) 579 (0.0%) 21.4
PROBE_SERVER/TREE_MERGE/ 14 (0.0%) 572 (0.0%) 40.8
SOURCE_TOOLS/release/ 18 (0.0%) 557 (0.0%) 30.9
PERL_SCRIPTS/MAUS/ 11 (0.0%) 549 (0.0%) 49.9
GDE/MUSCLE/src/unused/ 3 (0.0%) 548 (0.0%) 182.6
PROBE_WEB/SERVER/ 43 (0.1%) 523 (0.0%) 12.1
UNIT_TESTER/run/xsub/ 5 (0.0%) 511 (0.0%) 102.2
UNIT_TESTER/run/tools/ 44 (0.1%) 499 (0.0%) 11.3
SL/FILE_BUFFER/ 43 (0.1%) 495 (0.0%) 11.5
GDE/SUPPORT/ 26 (0.1%) 494 (0.0%) 19.0
PERL_SCRIPTS/GENOME/ 16 (0.0%) 479 (0.0%) 29.9
SL/REGEXPR/ 52 (0.1%) 478 (0.0%) 9.1
GDE/RAxML8/ 11 (0.0%) 470 (0.0%) 42.7
lib/pixmaps/edit/unused/ 48 (0.1%) 469 (0.0%) 9.7
lib/pictures/unused/ 11 (0.0%) 462 (0.0%) 42.0
NAMES_COM/ 72 (0.2%) 460 (0.0%) 6.3
lib/submit/ 2 (0.0%) 446 (0.0%) 223.0
lib/inputMasks/ 25 (0.1%) 436 (0.0%) 17.4
GDE/HGL_SRC/ 27 (0.1%) 418 (0.0%) 15.4
SL/MACROS/ 73 (0.2%) 408 (0.0%) 5.5
SL/TREE_ADMIN/ 36 (0.1%) 401 (0.0%) 11.1
SL/ARB_TREE/ 86 (0.2%) 401 (0.0%) 4.6
SL/NEIGHBOURJOIN/ 68 (0.2%) 392 (0.0%) 5.7
GDEHELP/HELP_PLAIN/ 12 (0.0%) 372 (0.0%) 31.0
SL/MATRIX/ 59 (0.1%) 370 (0.0%) 6.2
lib/pictures/faligner/ 16 (0.0%) 369 (0.0%) 23.0
lib/pictures/query/ 18 (0.0%) 368 (0.0%) 20.4
bin/ 30 (0.1%) 359 (0.0%) 11.9
SL/ROOTED_TREE/ 17 (0.0%) 350 (0.0%) 20.5
lib/pictures/pars/ 7 (0.0%) 335 (0.0%) 47.8
lib/pictures/awtc/ 19 (0.0%) 327 (0.0%) 17.2
SL/PTCLEAN/ 40 (0.1%) 324 (0.0%) 8.1
TESTAWT/ 17 (0.0%) 317 (0.0%) 18.6
GDE/FASTTREE/ 10 (0.0%) 312 (0.0%) 31.2
lib/pixmaps/icons/ 17 (0.0%) 310 (0.0%) 18.2
TESTVECTORFONT/ 15 (0.0%) 307 (0.0%) 20.4
lib/macros/ 27 (0.1%) 302 (0.0%) 11.1
CAT/ 20 (0.0%) 300 (0.0%) 15.0
lib/pixmaps/merge/ 7 (0.0%) 295 (0.0%) 42.1
lib/pixmaps/print/ 20 (0.0%) 281 (0.0%) 14.0
HELP_SOURCE/genhelp/ 24 (0.1%) 272 (0.0%) 11.3
GDE/ 46 (0.1%) 261 (0.0%) 5.6
BUGEX/ 12 (0.0%) 251 (0.0%) 20.9
PERL_SCRIPTS/test/ 18 (0.0%) 239 (0.0%) 13.2
PERL_SCRIPTS/ARBTOOLS/IFTHELP/ 16 (0.0%) 237 (0.0%) 14.8
SL/CONSENSUS/ 17 (0.0%) 225 (0.0%) 13.2
SL/ 41 (0.1%) 225 (0.0%) 5.4
HEADERLIBS/ 12 (0.0%) 213 (0.0%) 17.7
SL/REFENTRIES/ 45 (0.1%) 207 (0.0%) 4.6
GDE/MrBAYES/mrbayes_3.2.1/ 8 (0.0%) 195 (0.0%) 24.3
BINDEP/ 45 (0.1%) 187 (0.0%) 4.1
PERLTOOLS/ 47 (0.1%) 184 (0.0%) 3.9
GDE/CLUSTAL/ 24 (0.1%) 184 (0.0%) 7.6
AISC_COM/ 10 (0.0%) 183 (0.0%) 18.3
UNIT_TESTER/valgrind/ 5 (0.0%) 182 (0.0%) 36.4
SL/TRANSLATE/ 44 (0.1%) 182 (0.0%) 4.1
SL/INSDEL/ 39 (0.1%) 181 (0.0%) 4.6
SL/ITEM_SHADER/ 43 (0.1%) 180 (0.0%) 4.1
WETC/ 57 (0.1%) 165 (0.0%) 2.8
PERL_SCRIPTS/SAI/ 5 (0.0%) 163 (0.0%) 32.6
CHIP/ 29 (0.1%) 160 (0.0%) 5.5
SOURCE_TOOLS/COMPILE_COMPAT/ 16 (0.0%) 157 (0.0%) 9.8
GDE/TREEPUZZLE/ 28 (0.1%) 154 (0.0%) 5.5
GDE/LOOPTOOL/ 26 (0.1%) 152 (0.0%) 5.8
lib/export/ 43 (0.1%) 145 (0.0%) 3.3
lib/pictures/cpro/ 6 (0.0%) 143 (0.0%) 23.8
SL/XFERGUI/ 8 (0.0%) 142 (0.0%) 17.7
lib/sellists/ 28 (0.1%) 139 (0.0%) 4.9
lib/pixmaps/print/unused/ 8 (0.0%) 138 (0.0%) 17.2
UNIT_TESTER/run/general/ 12 (0.0%) 134 (0.0%) 11.1
lib/macros/ARB/SEQ_DATA/ 4 (0.0%) 127 (0.0%) 31.7
PERL_SCRIPTS/BIOPERL/ 3 (0.0%) 123 (0.0%) 41.0
lib/pictures/phylo/ 9 (0.0%) 118 (0.0%) 13.1
GDE/TREEPUZZLE/src/ 14 (0.0%) 113 (0.0%) 8.0
lib/dtd/ 8 (0.0%) 111 (0.0%) 13.8
GL/ 15 (0.0%) 111 (0.0%) 7.4
AWDEMO/ 18 (0.0%) 107 (0.0%) 5.9
PERL_SCRIPTS/GENERAL/ 1 (0.0%) 99 (0.0%) 99.0
SL/FILTSEQEXP/ 17 (0.0%) 95 (0.0%) 5.5
ARBDB/EXAMPLES/ 19 (0.0%) 89 (0.0%) 4.6
PERL_SCRIPTS/lib/ 3 (0.0%) 81 (0.0%) 27.0
SOURCE_TOOLS/docs/ 1 (0.0%) 79 (0.0%) 79.0
PERL_SCRIPTS/ARBTOOLS/TESTS/ 2 (0.0%) 78 (0.0%) 39.0
SL/QUERY/ 16 (0.0%) 76 (0.0%) 4.7
GDE/PHYML20130708/ 11 (0.0%) 74 (0.0%) 6.7
lib/BUGS/ 5 (0.0%) 71 (0.0%) 14.2
ORS_COM/ 23 (0.1%) 66 (0.0%) 2.8
UNIT_TESTER/run/consense/4/ 6 (0.0%) 61 (0.0%) 10.1
SL/ALIVIEW/ 33 (0.1%) 58 (0.0%) 1.7
GDE/MAFFT/mafft-7.055-with-extensions/core/ 3 (0.0%) 58 (0.0%) 19.3
lib/motifHack/ 8 (0.0%) 56 (0.0%) 7.0
XML_IMPORT/IMP_TREE/ 36 (0.1%) 53 (0.0%) 1.4
XML_IMPORT/ 12 (0.0%) 47 (0.0%) 3.9
PROBE_WEB/ 4 (0.0%) 46 (0.0%) 11.5
lib/pictures/window/ 3 (0.0%) 45 (0.0%) 15.0
GDE/MAFFT/ 6 (0.0%) 43 (0.0%) 7.1
UNIT_TESTER/run/pvp/ 8 (0.0%) 41 (0.0%) 5.1
lib/arb_default/ 19 (0.0%) 40 (0.0%) 2.1
HELP_SOURCE/source/ 15 (0.0%) 40 (0.0%) 2.6
etc/ 11 (0.0%) 38 (0.0%) 3.4
UNIT_TESTER/run/distance/ 11 (0.0%) 38 (0.0%) 3.4
SL/XFERSET/ 11 (0.0%) 37 (0.0%) 3.3
GDE/MrBAYES/ 5 (0.0%) 37 (0.0%) 7.4
GDE/MUSCLE/ 6 (0.0%) 37 (0.0%) 6.1
BINDINGS/PERL/ 1 (0.0%) 37 (0.0%) 37.0
PERL_SCRIPTS/ARBTOOLS/DOCUMENTED/ 3 (0.0%) 33 (0.0%) 11.0
GDE/MAFFT/mafft-7.053-without-extensions/ 1 (0.0%) 33 (0.0%) 33.0
RNA3D/Attic/OPENGL/ 14 (0.0%) 32 (0.0%) 2.2
HELP_SOURCE/oldhelp/prompt/ 3 (0.0%) 32 (0.0%) 10.6
PERL_SCRIPTS/ACI/ 1 (0.0%) 30 (0.0%) 30.0
HELP_SOURCE/oldhelp/seer/ 15 (0.0%) 30 (0.0%) 2.0
UNIT_TESTER/run/trees/ 1 (0.0%) 27 (0.0%) 27.0
UNIT_TESTER/run/consense/6/ 2 (0.0%) 26 (0.0%) 13.0
SL/PVP/ 9 (0.0%) 25 (0.0%) 2.7
lib/gde/ 3 (0.0%) 23 (0.0%) 7.6
PERL_SCRIPTS/IFTHELP/ 10 (0.0%) 18 (0.0%) 1.8
GDE/PROBCONS/ 4 (0.0%) 18 (0.0%) 4.5
GDE/SATIVA/ 7 (0.0%) 16 (0.0%) 2.2
doc/ 2 (0.0%) 11 (0.0%) 5.5
SL/SAICALC/ 11 (0.0%) 10 (0.0%) 0.9
GDE/PROBCONS/probcons/ 4 (0.0%) 10 (0.0%) 2.5
GDE/TREEPUZZLE/doc/ 5 (0.0%) 9 (0.0%) 1.8
GDEHELP/DATA_FILES/ 2 (0.0%) 8 (0.0%) 4.0
BINDINGS/ 6 (0.0%) 8 (0.0%) 1.3
UNIT_TESTER/sockets/ 3 (0.0%) 7 (0.0%) 2.3
lib/pictures/unused/findcorr/ 27 (0.1%) 5 (0.0%) 0.1
fig2dev/dev/ 62 (0.1%) 4 (0.0%) 0.0
fig2dev/ 68 (0.2%) 4 (0.0%) 0.0
UNIT_TESTER/run/diff/ 8 (0.0%) 4 (0.0%) 0.5
GDE/PHYML20130708/phyml/src/ 2 (0.0%) 4 (0.0%) 2.0
GDE/MAFFT/mafft-7.055-with-extensions/extensions/mxscarna_src/ 2 (0.0%) 4 (0.0%) 2.0
GDE/MUSCLE/src/ 5 (0.0%) 3 (0.0%) 0.6
SOURCE_TOOLS/refactor/ 4 (0.0%) 2 (0.0%) 0.5
PERL_SCRIPTS/MACROS/ 4 (0.0%) 2 (0.0%) 0.5
GDE/MAFFT/mafft-7.055-with-extensions/extensions/ 2 (0.0%) 2 (0.0%) 1.0
GDE/MAFFT/mafft-7.055-with-extensions/ 3 (0.0%) 2 (0.0%) 0.6
lib/motifHack/pixmaps/ 3 (0.0%) 1 (0.0%) 0.3
UNIT_TESTER/run/homefake/.arb_prop/ 1 (0.0%) 1 (0.0%) 1.0
UNIT_TESTER/run/fakehome/ 2 (0.0%) 1 (0.0%) 0.5
UNIT_TESTER/flags/ 2 (0.0%) 1 (0.0%) 0.5
lib/rna3d/images/ 44 (0.1%) 0 (0.0%) 0.0
lib/rna3d/ 2 (0.0%) 0 (0.0%) 0.0
lib/pixmaps/seer/ 3 (0.0%) 0 (0.0%) 0.0
lib/pictures/unused/demo/ 27 (0.1%) 0 (0.0%) 0.0
lib/pictures/seer/ 5 (0.0%) 0 (0.0%) 0.0
lib/pictures/findcorr/ 20 (0.0%) 0 (0.0%) 0.0
lib/pictures/etc/ 1 (0.0%) 0 (0.0%) 0.0
lib/pictures/demo/ 27 (0.1%) 0 (0.0%) 0.0
lib/pictures/PARS/ 1 (0.0%) 0 (0.0%) 0.0
lib/icons/ 2 (0.0%) 0 (0.0%) 0.0
RNA3D/Attic/images/ 22 (0.1%) 0 (0.0%) 0.0
RNA3D/Attic/data/ 5 (0.0%) 0 (0.0%) 0.0
PGT/xslt/ 1 (0.0%) 0 (0.0%) 0.0
PERL_SCRIPTS/ 4 (0.0%) 0 (0.0%) 0.0
NIELS_F77/ 13 (0.0%) 0 (0.0%) 0.0
JAVALIB/ 1 (0.0%) 0 (0.0%) 0.0
GDEHELP/PHYLIP/ 42 (0.1%) 0 (0.0%) 0.0
GDE/TREEPUZZLE/data/ 5 (0.0%) 0 (0.0%) 0.0
GDE/SATIVA/sativa/epac/ 1 (0.0%) 0 (0.0%) 0.0
GDE/PHYML20130708/phyml/bin/ 2 (0.0%) 0 (0.0%) 0.0
GDE/MOLPHY/utl/ 42 (0.1%) 0 (0.0%) 0.0
DUMMYINC/ 1 (0.0%) 0 (0.0%) 0.0
BERGEY/ 1 (0.0%) 0 (0.0%) 0.0

Activity of westram

Most Recent Commits

westram 2022-05-20 15:34 Rev.: 19047


* partial merge from 'sina' into 'trunk'
- fixes for ubuntu 10.04
* adds: log:branches/sina@19044:19045

3 lines of code changed in 2 files:

  • GDEHELP: Makefile (+1 -1)
  • PERL2ARB: extract_perl_interface.pl (+2 -2)
westram 2022-05-20 09:39 Rev.: 19043


* only check for {{{makedepend}}} when dependencies are updated (not required for plain build).
* update requirements
- makedepend not required for compile (only for develop).
- opengl.

28 lines of code changed in 5 files:

  • Makefile (+6 -5), arb_INSTALL.txt (+6 -4), arb_UBUNTU.txt (+4 -13)
  • SH: arb_installubuntu4arb.sh (+1 -1)
  • util: arb_check_build_env.pl (+11 -3)
westram 2022-05-18 13:59 Rev.: 19033


* set optimization level to 1 (instead of 0)
- otherwise sanitizer reports bogus buffer-overflows.
- bug had been introduced by r18890
* comment (buffer-overflows occurred in static variable 'glservercntrl' - weird)

5 lines of code changed in 2 files:

  • Makefile (+4)
  • SERVERCNTRL: servercntrl.cxx (+1 -1)
westram 2022-05-06 16:47 Rev.: 19024


* fix cursor tracking for consensus editing:
- make variable(s) module-locale + rename
- when cursor is tracked -> only remember position. set cursor after routing down hierarchy.
- track only CHANGED cursor positions => placement less often wrong

22 lines of code changed in 4 files:

  • EDIT4: ED4_main.cxx (-1), ED4_no_class.cxx (+22 -7), ED4_root.cxx (-1), ed4_defs.hxx (-1)
westram 2022-05-06 16:44 Rev.: 19023


* require mapping is up-to-date when {{{jump_sequence_pos}}} gets called.
* update mapping before setting cursor
- after executing keystroke.
- after block-ops.
* rename local.

10 lines of code changed in 3 files:

  • EDIT4: ED4_block.cxx (+2), ED4_cursor.cxx (+4 -2), ED4_no_class.cxx (+4)
westram 2022-05-06 10:44 Rev.: 19022


* add example macro for database maintainers
- allows to delete all fields except those listed in the script
- script needs to be edited (to allow execution and to maintain field list)
* mention script in "Delete Fields" help.

114 lines of code changed in 3 files:

  • HELP_SOURCE/source: spaf_delete.hlp (new)
  • lib/macros: keep_listed_fields.amc (new 114)
westram 2022-04-06 14:34 Rev.: 18983


* updated openGL requirements (for openSuSE leap 15.3).

4 lines of code changed in 1 file:

  • arb_INSTALL.txt (+4 -2)
westram 2022-04-06 14:33 Rev.: 18982


* fix for sun/rpc moved from glib->libtirpc (e.g. openSuSE leap 15.3 + Fedora 28)

18 lines of code changed in 2 files:

  • Makefile (+16 -2), arb_INSTALL.txt (+2 -1)
westram 2022-04-06 14:29 Rev.: 18981


* export/use {{{ARB_CORE_LIBS}}} (instead of using {{{ARB_GLIB_LIBS}}} directly).

9 lines of code changed in 7 files:

  • Makefile (+3 -1)
  • CORE: needs_libs.libCORE_so (+1 -1)
  • PERLTOOLS: Makefile (+1 -1)
  • SOURCE_TOOLS: export2sub (+1 -1)
  • SOURCE_TOOLS/COMPILE_COMPAT: Makefile (+1 -1)
  • TOOLS: Makefile (+1 -1)
  • UNIT_TESTER: Makefile (+1 -1)
westram 2022-03-30 17:39 Rev.: 18980


* {{{create_toggle_field}}}:
- change one flavor: allow to pass label AND orientation.
- directly pass labels (instead of explicit calls to {{{AW_window::label}}})

24 lines of code changed in 6 files:

  • ARB_GDE: GDE.cxx (+4 -6)
  • AWT: AWT_canio.cxx (+5 -10), AWT_input_mask.cxx (+10 -7)
  • EDIT4: ED4_seq_colors.cxx (+2 -8)
  • WINDOW: AW_option_toggle.cxx (+2 -2), aw_window.hxx (+1 -1)
westram 2022-03-30 17:36 Rev.: 18979


* fix use of empty labels:
- {{{AW_window::label}}} no longer
* accepts empty labels.
* allows to overwrite existing labels (assume this happens by mistake).
- {{{create_toggle_field}}}:
* assert label is used (in flavor with label-parameter)
* remove empty and NULp labels passed (from callers).

16 lines of code changed in 9 files:

  • MERGE: MG_gene_species.cxx (+1 -1)
  • NTREE: AP_consensus.cxx (+2 -2), NT_taxonomy.cxx (+1 -1), ad_transpro.cxx (+1 -1)
  • SL/DB_QUERY: db_query.cxx (+3 -3)
  • SL/DB_UI: ui_species.cxx (+1 -1)
  • SL/ITEMS: item_sel_list.cxx (+1 -1)
  • WINDOW: AW_option_toggle.cxx (+3 -3), AW_window.cxx (+3)
westram 2022-03-30 17:31 Rev.: 18978


* remove unused mnemonic parameter to 'create_toggle_field'
- makes no sense anyway: having mnemonic for each toggle is sufficient (hence not implemented).

24 lines of code changed in 14 files:

  • EDIT4: ED4_naligner.cxx (+2 -2), graph_aligner_gui.cxx (+1 -1)
  • MERGE: MG_gene_species.cxx (+1 -1)
  • NTREE: AP_consensus.cxx (+2 -2), NT_group_search.cxx (+1 -1), NT_taxonomy.cxx (+1 -1), ad_transpro.cxx (+1 -1)
  • SL/DB_QUERY: db_query.cxx (+3 -3)
  • SL/DB_UI: ui_species.cxx (+2 -2)
  • SL/FAST_ALIGNER: fast_aligner.cxx (+5 -5)
  • SL/ITEMS: item_sel_list.cxx (+1 -1)
  • STAT: ST_window.cxx (+1 -1)
  • WINDOW: AW_option_toggle.cxx (+1 -1), aw_window.hxx (+2 -1)
westram 2022-03-30 17:29 Rev.: 18977


* use {{{AW_orientation}}} to specify orientation of radio button.

25 lines of code changed in 13 files:

  • ARB_GDE: GDE.cxx (+1 -1)
  • AWT: AWT_asciiprint.cxx (+2 -2), AWT_canio.cxx (+5 -5), AWT_input_mask.cxx (+3 -3)
  • EDIT4: ED4_ProteinViewer.cxx (+1 -1), ED4_search.cxx (+2 -2), ED4_seq_colors.cxx (+2 -2), ED4_visualizeSAI.cxx (+1 -1)
  • NTREE: ColumnStat_2_gnuplot.cxx (+1 -1)
  • RNA3D: RNA3D_Interface.cxx (+2 -2)
  • SL/DB_QUERY: db_query.cxx (+1 -1)
  • WINDOW: AW_option_toggle.cxx (+3 -3), aw_window.hxx (+1 -1)
westram 2022-03-30 11:53 Rev.: 18976


* remove obsolete method {{{mark_species_in_rest_of_tree_that}}}.

0 lines of code changed in 2 files:

  • SL/TREEDISP: TreeDisplay.cxx (-11), TreeDisplay.hxx (-1)
westram 2022-03-30 11:52 Rev.: 18975


* remove unused member {{{opened_with_marked}}}.

1 lines of code changed in 1 file:

  • SL/TREEDISP: TreeDisplay.cxx (+1 -4)
westram 2022-03-30 11:48 Rev.: 18974


* {{{next_expand_mode}}} now also expands all groups containing unmarked species:
- can be applied to subtrees by key 'x'.
- update documentation.
- impl: also count **unmarked** species in {{{AWT_graphic_tree_group_state}}}.

38 lines of code changed in 3 files:

  • HELP_SOURCE/source: nt_keys.hlp (new)
  • SL/TREEDISP: TreeDisplay.cxx (+34 -18)
westram 2022-03-30 11:44 Rev.: 18973


* implement 'expand unmarked'
- call from 'collapse' menu.
- document.

8 lines of code changed in 5 files:

  • HELP_SOURCE/source: tree_group.hlp (new)
  • SL/TREEDISP: TreeCallbacks.cxx (+2), TreeDisplay.cxx (+4 -2), TreeDisplay.hxx (+1)
westram 2022-03-30 11:41 Rev.: 18972


* {{{AWT_graphic_tree_group_state}}}:
- privatize members.
- declare friendship of {{{detect_group_state}}}.
- comment.

8 lines of code changed in 1 file:

  • SL/TREEDISP: TreeDisplay.cxx (+8 -1)
westram 2022-03-23 11:25 Rev.: 18971


* include {{{rpc/types.h}}} under OSX only (fixes compilation under SuSE Leap 15.3).

Notes:
* originally introduced with [14000]
* merged to trunk with [14007]

7 lines of code changed in 1 file:

  • ARBDB: arbdb.cxx (+7 -1)
westram 2022-03-21 14:29 Rev.: 18970


* cleanup label handling
- reactivate unused else-branch (handles radio field w/o label).
- create_option_menu: {{{calculate_label_size}}} again called w/o passing explicit label.
- remove parameter {{{non_at_label}}} from {{{calculate_label_size}}}.

23 lines of code changed in 3 files:

  • WINDOW: AW_button.cxx (+7 -5), AW_option_toggle.cxx (+14 -25), aw_window.hxx (+2 -1)

(8811 more)

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