/trunk Developers: westram

Login name:
westram
Total Commits:
41,065 (86.7%)
Lines of Code:
1,175,835 (47.2%)
Most Recent Commit:
2020-02-26 18:46
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Activity in Directories

Directory Changes Lines of Code Lines per Change
Totals 41065 (100.0%) 1175835 (100.0%) 28.6
ARBDB/ 3838 (9.3%) 119480 (10.2%) 31.1
lib/nas/ 30 (0.1%) 66561 (5.7%) 2218.7
GDE/PHYLIP/ 146 (0.4%) 56082 (4.8%) 384.1
WINDOW/ 2577 (6.3%) 55346 (4.7%) 21.4
AWT/ 2185 (5.3%) 48862 (4.2%) 22.3
UNIT_TESTER/run/display/ 184 (0.4%) 46525 (4.0%) 252.8
NTREE/ 2439 (5.9%) 46027 (3.9%) 18.8
EDIT4/ 2313 (5.6%) 42587 (3.6%) 18.4
HELP_SOURCE/oldhelp/ 1838 (4.5%) 36335 (3.1%) 19.7
CONVERTALN/ 458 (1.1%) 29082 (2.5%) 63.4
TOOLS/ 700 (1.7%) 22857 (1.9%) 32.6
UNIT_TESTER/run/ 119 (0.3%) 21531 (1.8%) 180.9
GDE/PHYLIP/doc/ 42 (0.1%) 21478 (1.8%) 511.3
GENOM_IMPORT/ 379 (0.9%) 19946 (1.7%) 52.6
PARSIMONY/ 734 (1.8%) 18983 (1.6%) 25.8
PROBE/ 679 (1.7%) 18842 (1.6%) 27.7
DIST/ 723 (1.8%) 17210 (1.5%) 23.8
SOURCE_TOOLS/ 765 (1.9%) 15364 (1.3%) 20.0
GDE/PHYML/ 31 (0.1%) 15188 (1.3%) 489.9
/ 1005 (2.4%) 14214 (1.2%) 14.1
GENOM/ 870 (2.1%) 14171 (1.2%) 16.2
MERGE/ 700 (1.7%) 13817 (1.2%) 19.7
SECEDIT/ 576 (1.4%) 13413 (1.1%) 23.2
GDE/PHYML20130708/phyml/ 9 (0.0%) 13410 (1.1%) 1490.0
SL/FAST_ALIGNER/ 295 (0.7%) 12379 (1.1%) 41.9
lib/ 59 (0.1%) 12300 (1.0%) 208.4
ARB_GDE/ 573 (1.4%) 11647 (1.0%) 20.3
PROBE_DESIGN/ 485 (1.2%) 10564 (0.9%) 21.7
CORE/ 513 (1.2%) 10281 (0.9%) 20.0
SL/TREEDISP/ 477 (1.2%) 10061 (0.9%) 21.0
TEMPLATES/ 304 (0.7%) 9227 (0.8%) 30.3
NALIGNER/ 353 (0.9%) 9226 (0.8%) 26.1
MULTI_PROBE/ 529 (1.3%) 9063 (0.8%) 17.1
UNIT_TESTER/ 510 (1.2%) 8899 (0.8%) 17.4
ptpan/ 124 (0.3%) 8692 (0.7%) 70.0
lib/pictures/ 406 (1.0%) 8529 (0.7%) 21.0
PROBE_WEB/CLIENT/ 267 (0.7%) 8512 (0.7%) 31.8
AWTI/ 373 (0.9%) 7958 (0.7%) 21.3
GDE/FASTDNAML/ 37 (0.1%) 7391 (0.6%) 199.7
AWTC/ 349 (0.8%) 6988 (0.6%) 20.0
PRIMER_DESIGN/ 281 (0.7%) 6874 (0.6%) 24.4
AISC/ 199 (0.5%) 6857 (0.6%) 34.4
EISPACK/ 16 (0.0%) 6736 (0.6%) 421.0
GDE/RAxML/ 61 (0.1%) 6650 (0.6%) 109.0
GDE/AxML/ 17 (0.0%) 6003 (0.5%) 353.1
lib/import/ 211 (0.5%) 5908 (0.5%) 28.0
HELP_SOURCE/ 218 (0.5%) 5664 (0.5%) 25.9
PHYLO/ 398 (1.0%) 4755 (0.4%) 11.9
ALIV3/ 174 (0.4%) 4669 (0.4%) 26.8
UNIT_TESTER/run/impexp/ 50 (0.1%) 4434 (0.4%) 88.6
CONSENSUS_TREE/ 311 (0.8%) 4411 (0.4%) 14.1
PROBE_SERVER/PROBE_GROUP/ 91 (0.2%) 4351 (0.4%) 47.8
PROBE_SET/ 307 (0.7%) 4323 (0.4%) 14.0
AISC_COM/C/ 280 (0.7%) 4058 (0.3%) 14.4
STAT/ 266 (0.6%) 3842 (0.3%) 14.4
ISLAND_HOPPING/ 132 (0.3%) 3810 (0.3%) 28.8
lib/pixmaps/ 302 (0.7%) 3582 (0.3%) 11.8
AISC_MKPTPS/ 108 (0.3%) 3567 (0.3%) 33.0
AISC_COM/AISC/ 108 (0.3%) 3467 (0.3%) 32.1
GDE/CLUSTALW/ 41 (0.1%) 3373 (0.3%) 82.2
RNA3D/ 297 (0.7%) 3355 (0.3%) 11.2
ARBDBPP/ 72 (0.2%) 2998 (0.3%) 41.6
SL/DB_QUERY/ 163 (0.4%) 2955 (0.3%) 18.1
SH/ 163 (0.4%) 2934 (0.2%) 18.0
lib/addlibs/ 13 (0.0%) 2859 (0.2%) 219.9
EDIT/ 91 (0.2%) 2810 (0.2%) 30.8
GDEHELP/MENUS/ 240 (0.6%) 2635 (0.2%) 10.9
GDE/MOLPHY/ 105 (0.3%) 2531 (0.2%) 24.1
SEQ_QUALITY/ 232 (0.6%) 2516 (0.2%) 10.8
PGT/ 178 (0.4%) 2495 (0.2%) 14.0
lib/import/nonformats/ 19 (0.0%) 2340 (0.2%) 123.1
UNIT_TESTER/run/consense/3/ 11 (0.0%) 2336 (0.2%) 212.3
lib/pictures/edit4/ 45 (0.1%) 2300 (0.2%) 51.1
SL/AP_TREE/ 147 (0.4%) 2285 (0.2%) 15.5
ALEIO/ 53 (0.1%) 2265 (0.2%) 42.7
PROBE_SERVER/PROBE_GROUP_DESIGN/ 46 (0.1%) 2253 (0.2%) 48.9
SL/DB_SCANNER/ 131 (0.3%) 2236 (0.2%) 17.0
util/ 208 (0.5%) 2231 (0.2%) 10.7
SL/PRONUC/ 122 (0.3%) 2217 (0.2%) 18.1
GL/glAW/ 72 (0.2%) 2108 (0.2%) 29.2
NAMES/ 120 (0.3%) 2062 (0.2%) 17.1
SL/ALILINK/ 32 (0.1%) 2061 (0.2%) 64.4
READSEQ/ 34 (0.1%) 2002 (0.2%) 58.8
lib/pixmaps/unused/ 147 (0.4%) 1993 (0.2%) 13.5
SL/TREE_READ/ 91 (0.2%) 1991 (0.2%) 21.8
SL/AW_NAME/ 168 (0.4%) 1822 (0.2%) 10.8
RNACMA/ 65 (0.2%) 1814 (0.2%) 27.9
PROBE_SERVER/ 85 (0.2%) 1809 (0.2%) 21.2
lib/pictures/consensus/ 13 (0.0%) 1667 (0.1%) 128.2
ORS_CGI/ 55 (0.1%) 1633 (0.1%) 29.6
SL/SEQIO/ 74 (0.2%) 1620 (0.1%) 21.8
SL/DB_UI/ 120 (0.3%) 1569 (0.1%) 13.0
GL/glpng/ 35 (0.1%) 1550 (0.1%) 44.2
SL/HELIX/ 92 (0.2%) 1503 (0.1%) 16.3
PERL2ARB/ 149 (0.4%) 1471 (0.1%) 9.8
UNIT_TESTER/run/consense/2/ 13 (0.0%) 1468 (0.1%) 112.9
SL/ITEMS/ 114 (0.3%) 1450 (0.1%) 12.7
PROBE_SERVER/WORKER/ 33 (0.1%) 1432 (0.1%) 43.3
SL/GUI_ALIVIEW/ 157 (0.4%) 1403 (0.1%) 8.9
SERVERCNTRL/ 125 (0.3%) 1392 (0.1%) 11.1
lib/pictures/awt/ 75 (0.2%) 1360 (0.1%) 18.1
TEST/ 40 (0.1%) 1327 (0.1%) 33.1
ARBDB2/ 29 (0.1%) 1309 (0.1%) 45.1
SL/CB/ 46 (0.1%) 1288 (0.1%) 28.0
TRS/ 37 (0.1%) 1279 (0.1%) 34.5
lib/pictures/merge/ 48 (0.1%) 1214 (0.1%) 25.2
lib/pixmaps/pgt/ 43 (0.1%) 1199 (0.1%) 27.8
ARBDB_COMPRESS/ 30 (0.1%) 1197 (0.1%) 39.9
GDE/CORE/ 94 (0.2%) 1193 (0.1%) 12.6
SEER/ 41 (0.1%) 1115 (0.1%) 27.1
GDEHELP/ 129 (0.3%) 1098 (0.1%) 8.5
XML/ 70 (0.2%) 1063 (0.1%) 15.1
SL/SEQUENCE/ 136 (0.3%) 995 (0.1%) 7.3
SL/NDS/ 79 (0.2%) 954 (0.1%) 12.0
PROBE_COM/ 98 (0.2%) 912 (0.1%) 9.3
TREE_COMPRESS/ 9 (0.0%) 909 (0.1%) 101.0
SL/TREE_WRITE/ 81 (0.2%) 879 (0.1%) 10.8
ARBDBS/ 29 (0.1%) 850 (0.1%) 29.3
UNIT_TESTER/run/consense/1/ 17 (0.0%) 813 (0.1%) 47.8
SL/GROUP_SEARCH/ 20 (0.0%) 783 (0.1%) 39.1
GDE/MOLPHY/doc/ 4 (0.0%) 758 (0.1%) 189.5
SL/LOCATION/ 27 (0.1%) 751 (0.1%) 27.8
PERL_SCRIPTS/ARBTOOLS/ 14 (0.0%) 731 (0.1%) 52.2
TREEGEN/ 123 (0.3%) 701 (0.1%) 5.6
DBSERVER/ 67 (0.2%) 695 (0.1%) 10.3
SL/FILTER/ 68 (0.2%) 692 (0.1%) 10.1
lib/macros/.checks/ 3 (0.0%) 675 (0.1%) 225.0
lib/pixmaps/icons/unused/ 32 (0.1%) 662 (0.1%) 20.6
SL/AW_HELIX/ 72 (0.2%) 657 (0.1%) 9.1
lib/pixmaps/edit/ 72 (0.2%) 632 (0.1%) 8.7
UNIT_TESTER/run/pars/ 52 (0.1%) 597 (0.1%) 11.4
PERL_SCRIPTS/SPECIES/ 24 (0.1%) 591 (0.1%) 24.6
UNIT_TESTER/run/help/ 7 (0.0%) 584 (0.0%) 83.4
ORS_SERVER/ 33 (0.1%) 580 (0.0%) 17.5
PROBE_SERVER/TREE_MERGE/ 14 (0.0%) 572 (0.0%) 40.8
PERL_SCRIPTS/MAUS/ 11 (0.0%) 549 (0.0%) 49.9
GDE/MUSCLE/src/unused/ 3 (0.0%) 548 (0.0%) 182.6
PROBE_WEB/SERVER/ 43 (0.1%) 523 (0.0%) 12.1
UNIT_TESTER/run/xsub/ 5 (0.0%) 511 (0.0%) 102.2
SOURCE_TOOLS/release/ 15 (0.0%) 507 (0.0%) 33.8
UNIT_TESTER/run/tools/ 43 (0.1%) 499 (0.0%) 11.6
SL/FILE_BUFFER/ 43 (0.1%) 495 (0.0%) 11.5
GDE/SUPPORT/ 26 (0.1%) 494 (0.0%) 19.0
PERL_SCRIPTS/GENOME/ 15 (0.0%) 478 (0.0%) 31.8
SL/REGEXPR/ 47 (0.1%) 473 (0.0%) 10.0
lib/pixmaps/edit/unused/ 48 (0.1%) 469 (0.0%) 9.7
GDE/RAxML8/ 10 (0.0%) 469 (0.0%) 46.9
lib/pictures/unused/ 11 (0.0%) 462 (0.0%) 42.0
NAMES_COM/ 70 (0.2%) 457 (0.0%) 6.5
lib/submit/ 2 (0.0%) 446 (0.0%) 223.0
lib/inputMasks/ 25 (0.1%) 436 (0.0%) 17.4
GDEHELP/HELP_WRITTEN/ 15 (0.0%) 431 (0.0%) 28.7
GDE/HGL_SRC/ 27 (0.1%) 418 (0.0%) 15.4
SL/MACROS/ 71 (0.2%) 401 (0.0%) 5.6
SL/TREE_ADMIN/ 34 (0.1%) 396 (0.0%) 11.6
SL/ARB_TREE/ 81 (0.2%) 396 (0.0%) 4.8
GDEHELP/HELP_PLAIN/ 11 (0.0%) 371 (0.0%) 33.7
lib/pictures/faligner/ 16 (0.0%) 369 (0.0%) 23.0
bin/ 27 (0.1%) 356 (0.0%) 13.1
SL/ROOTED_TREE/ 17 (0.0%) 350 (0.0%) 20.5
SL/NEIGHBOURJOIN/ 58 (0.1%) 350 (0.0%) 6.0
lib/pictures/pars/ 7 (0.0%) 335 (0.0%) 47.8
lib/pictures/query/ 17 (0.0%) 332 (0.0%) 19.5
SL/MATRIX/ 50 (0.1%) 326 (0.0%) 6.5
SL/PTCLEAN/ 39 (0.1%) 323 (0.0%) 8.2
TESTAWT/ 17 (0.0%) 317 (0.0%) 18.6
lib/pixmaps/icons/ 17 (0.0%) 310 (0.0%) 18.2
TESTVECTORFONT/ 15 (0.0%) 307 (0.0%) 20.4
lib/pictures/awtc/ 17 (0.0%) 305 (0.0%) 17.9
CAT/ 20 (0.0%) 300 (0.0%) 15.0
lib/pixmaps/merge/ 7 (0.0%) 295 (0.0%) 42.1
lib/pixmaps/print/ 20 (0.0%) 281 (0.0%) 14.0
HELP_SOURCE/genhelp/ 23 (0.1%) 267 (0.0%) 11.6
GDE/ 45 (0.1%) 258 (0.0%) 5.7
BUGEX/ 11 (0.0%) 250 (0.0%) 22.7
PERL_SCRIPTS/test/ 18 (0.0%) 239 (0.0%) 13.2
PERL_SCRIPTS/ARBTOOLS/IFTHELP/ 16 (0.0%) 237 (0.0%) 14.8
SL/CONSENSUS/ 17 (0.0%) 225 (0.0%) 13.2
SL/ 39 (0.1%) 210 (0.0%) 5.3
HEADERLIBS/ 11 (0.0%) 210 (0.0%) 19.0
SL/REFENTRIES/ 42 (0.1%) 204 (0.0%) 4.8
GDE/MrBAYES/mrbayes_3.2.1/ 7 (0.0%) 194 (0.0%) 27.7
lib/macros/ 26 (0.1%) 188 (0.0%) 7.2
GDE/CLUSTAL/ 24 (0.1%) 184 (0.0%) 7.6
BINDEP/ 44 (0.1%) 183 (0.0%) 4.1
UNIT_TESTER/valgrind/ 5 (0.0%) 182 (0.0%) 36.4
AISC_COM/ 9 (0.0%) 182 (0.0%) 20.2
SL/INSDEL/ 38 (0.1%) 180 (0.0%) 4.7
SL/TRANSLATE/ 39 (0.1%) 177 (0.0%) 4.5
PERLTOOLS/ 43 (0.1%) 176 (0.0%) 4.0
SL/ITEM_SHADER/ 38 (0.1%) 173 (0.0%) 4.5
PERL_SCRIPTS/SAI/ 5 (0.0%) 163 (0.0%) 32.6
CHIP/ 29 (0.1%) 160 (0.0%) 5.5
WETC/ 53 (0.1%) 157 (0.0%) 2.9
SOURCE_TOOLS/COMPILE_COMPAT/ 14 (0.0%) 154 (0.0%) 11.0
GDE/TREEPUZZLE/ 28 (0.1%) 154 (0.0%) 5.5
GDE/LOOPTOOL/ 26 (0.1%) 152 (0.0%) 5.8
lib/export/ 43 (0.1%) 145 (0.0%) 3.3
lib/pictures/cpro/ 6 (0.0%) 143 (0.0%) 23.8
lib/sellists/ 28 (0.1%) 139 (0.0%) 4.9
lib/pixmaps/print/unused/ 8 (0.0%) 138 (0.0%) 17.2
SL/XFERGUI/ 5 (0.0%) 136 (0.0%) 27.2
UNIT_TESTER/run/general/ 12 (0.0%) 134 (0.0%) 11.1
lib/macros/ARB/SEQ_DATA/ 4 (0.0%) 127 (0.0%) 31.7
PERL_SCRIPTS/BIOPERL/ 3 (0.0%) 123 (0.0%) 41.0
lib/pictures/phylo/ 9 (0.0%) 118 (0.0%) 13.1
GDE/TREEPUZZLE/src/ 14 (0.0%) 113 (0.0%) 8.0
lib/dtd/ 8 (0.0%) 111 (0.0%) 13.8
GL/ 14 (0.0%) 110 (0.0%) 7.8
AWDEMO/ 18 (0.0%) 107 (0.0%) 5.9
PERL_SCRIPTS/GENERAL/ 1 (0.0%) 99 (0.0%) 99.0
SL/FILTSEQEXP/ 16 (0.0%) 94 (0.0%) 5.8
ARBDB/EXAMPLES/ 19 (0.0%) 89 (0.0%) 4.6
PERL_SCRIPTS/lib/ 2 (0.0%) 80 (0.0%) 40.0
SOURCE_TOOLS/docs/ 1 (0.0%) 79 (0.0%) 79.0
PERL_SCRIPTS/ARBTOOLS/TESTS/ 2 (0.0%) 78 (0.0%) 39.0
GDE/PHYML20130708/ 11 (0.0%) 74 (0.0%) 6.7
lib/BUGS/ 5 (0.0%) 71 (0.0%) 14.2
SL/QUERY/ 14 (0.0%) 71 (0.0%) 5.0
ORS_COM/ 23 (0.1%) 66 (0.0%) 2.8
UNIT_TESTER/run/consense/4/ 6 (0.0%) 61 (0.0%) 10.1
lib/motifHack/ 8 (0.0%) 56 (0.0%) 7.0
SL/ALIVIEW/ 29 (0.1%) 54 (0.0%) 1.8
XML_IMPORT/IMP_TREE/ 27 (0.1%) 53 (0.0%) 1.9
XML_IMPORT/ 10 (0.0%) 47 (0.0%) 4.7
PROBE_WEB/ 4 (0.0%) 46 (0.0%) 11.5
lib/pictures/window/ 3 (0.0%) 45 (0.0%) 15.0
GDE/MAFFT/ 6 (0.0%) 43 (0.0%) 7.1
UNIT_TESTER/run/pvp/ 8 (0.0%) 41 (0.0%) 5.1
lib/arb_default/ 19 (0.0%) 40 (0.0%) 2.1
etc/ 11 (0.0%) 38 (0.0%) 3.4
GDE/MrBAYES/ 5 (0.0%) 37 (0.0%) 7.4
SL/XFERSET/ 9 (0.0%) 35 (0.0%) 3.8
GDE/MAFFT/mafft-7.055-with-extensions/core/ 2 (0.0%) 35 (0.0%) 17.5
PERL_SCRIPTS/ARBTOOLS/DOCUMENTED/ 3 (0.0%) 33 (0.0%) 11.0
GDE/MAFFT/mafft-7.053-without-extensions/ 1 (0.0%) 33 (0.0%) 33.0
RNA3D/Attic/OPENGL/ 14 (0.0%) 32 (0.0%) 2.2
HELP_SOURCE/oldhelp/prompt/ 2 (0.0%) 32 (0.0%) 16.0
PERL_SCRIPTS/ACI/ 1 (0.0%) 30 (0.0%) 30.0
HELP_SOURCE/oldhelp/seer/ 15 (0.0%) 30 (0.0%) 2.0
GDE/MUSCLE/ 5 (0.0%) 30 (0.0%) 6.0
UNIT_TESTER/run/trees/ 1 (0.0%) 27 (0.0%) 27.0
UNIT_TESTER/run/consense/6/ 2 (0.0%) 26 (0.0%) 13.0
lib/gde/ 3 (0.0%) 23 (0.0%) 7.6
UNIT_TESTER/run/distance/ 6 (0.0%) 19 (0.0%) 3.1
PERL_SCRIPTS/IFTHELP/ 10 (0.0%) 18 (0.0%) 1.8
GDE/FASTTREE/ 5 (0.0%) 18 (0.0%) 3.6
SL/PVP/ 5 (0.0%) 14 (0.0%) 2.8
doc/ 2 (0.0%) 11 (0.0%) 5.5
GDE/SATIVA/ 6 (0.0%) 11 (0.0%) 1.8
GDE/PROBCONS/ 3 (0.0%) 10 (0.0%) 3.3
GDE/TREEPUZZLE/doc/ 5 (0.0%) 9 (0.0%) 1.8
GDEHELP/DATA_FILES/ 2 (0.0%) 8 (0.0%) 4.0
UNIT_TESTER/sockets/ 3 (0.0%) 7 (0.0%) 2.3
GDE/PROBCONS/probcons/ 3 (0.0%) 7 (0.0%) 2.3
lib/pictures/unused/findcorr/ 27 (0.1%) 5 (0.0%) 0.1
BINDINGS/ 5 (0.0%) 5 (0.0%) 1.0
fig2dev/dev/ 62 (0.2%) 4 (0.0%) 0.0
fig2dev/ 68 (0.2%) 4 (0.0%) 0.0
UNIT_TESTER/run/diff/ 8 (0.0%) 4 (0.0%) 0.5
GDE/PHYML20130708/phyml/src/ 2 (0.0%) 4 (0.0%) 2.0
GDE/MAFFT/mafft-7.055-with-extensions/extensions/mxscarna_src/ 2 (0.0%) 4 (0.0%) 2.0
GDE/MAFFT/mafft-7.055-with-extensions/extensions/ 2 (0.0%) 2 (0.0%) 1.0
GDE/MAFFT/mafft-7.055-with-extensions/ 3 (0.0%) 2 (0.0%) 0.6
lib/motifHack/pixmaps/ 3 (0.0%) 1 (0.0%) 0.3
UNIT_TESTER/run/homefake/.arb_prop/ 1 (0.0%) 1 (0.0%) 1.0
UNIT_TESTER/run/fakehome/ 2 (0.0%) 1 (0.0%) 0.5
UNIT_TESTER/flags/ 2 (0.0%) 1 (0.0%) 0.5
PERL_SCRIPTS/MACROS/ 3 (0.0%) 1 (0.0%) 0.3
lib/rna3d/images/ 22 (0.1%) 0 (0.0%) 0.0
lib/rna3d/ 2 (0.0%) 0 (0.0%) 0.0
lib/pixmaps/seer/ 3 (0.0%) 0 (0.0%) 0.0
lib/pictures/unused/demo/ 27 (0.1%) 0 (0.0%) 0.0
lib/pictures/seer/ 5 (0.0%) 0 (0.0%) 0.0
lib/pictures/findcorr/ 20 (0.0%) 0 (0.0%) 0.0
lib/pictures/etc/ 1 (0.0%) 0 (0.0%) 0.0
lib/pictures/demo/ 27 (0.1%) 0 (0.0%) 0.0
lib/pictures/PARS/ 1 (0.0%) 0 (0.0%) 0.0
lib/icons/ 2 (0.0%) 0 (0.0%) 0.0
SL/SAICALC/ 4 (0.0%) 0 (0.0%) 0.0
RNA3D/Attic/images/ 22 (0.1%) 0 (0.0%) 0.0
RNA3D/Attic/data/ 5 (0.0%) 0 (0.0%) 0.0
PGT/xslt/ 1 (0.0%) 0 (0.0%) 0.0
PERL_SCRIPTS/ 4 (0.0%) 0 (0.0%) 0.0
NIELS_F77/ 13 (0.0%) 0 (0.0%) 0.0
JAVALIB/ 1 (0.0%) 0 (0.0%) 0.0
GDEHELP/PHYLIP/ 42 (0.1%) 0 (0.0%) 0.0
GDE/TREEPUZZLE/data/ 5 (0.0%) 0 (0.0%) 0.0
GDE/SATIVA/sativa/epac/ 1 (0.0%) 0 (0.0%) 0.0
GDE/PHYML20130708/phyml/bin/ 2 (0.0%) 0 (0.0%) 0.0
GDE/MUSCLE/src/ 3 (0.0%) 0 (0.0%) 0.0
GDE/MOLPHY/utl/ 42 (0.1%) 0 (0.0%) 0.0
DUMMYINC/ 1 (0.0%) 0 (0.0%) 0.0
BERGEY/ 1 (0.0%) 0 (0.0%) 0.0

Activity of westram

Most Recent Commits

westram 2020-02-26 18:46 Rev.: 18339


* full update from child 'fix' into 'trunk'
- fixes #754
* adds: log:branches/fix@18333:18338

42 lines of code changed in 4 files:

  • NTREE: NT_main.cxx (+2)
  • PERL2ARB: ARB.pm (+4 -3)
  • SH: README (+1), arb_macro_compatibility.sh (new 35)
westram 2020-02-26 18:36 Rev.: 18337


* partial merge from 'fix' into 'trunk'
- fix some warnings
- remove obsolete script
* adds: log:branches/fix@18331:18332

14 lines of code changed in 4 files:

  • Makefile (+7 -1)
  • CORE: arb_strbuf.h (+4 -2)
  • SH: README (+3 -4), arb_ludwig (del)
westram 2020-02-26 17:18 Rev.: 18334


* do not try to dump not-generated list under OSX

2 lines of code changed in 1 file:

  • UNIT_TESTER: Makefile.suite (+2)
westram 2020-02-26 10:48 Rev.: 18327


* disable duplicate-symbol-test introduced with [18322] for OSX
- nm-output under OSX does not provide enough information.

5 lines of code changed in 1 file:

  • UNIT_TESTER: Makefile.suite (+5)
westram 2020-02-25 17:52 Rev.: 18326


* script to test perl functionality.

75 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS/TESTS: automatic.pl (new 75)
westram 2020-02-25 16:32 Rev.: 18325


* result of sorting database by a criteria with non-strict species order is implementation dependent.
- test explicit order only for one OS (that test has only minor/no importance)

7 lines of code changed in 1 file:

  • NTREE: NT_sort.cxx (+7)
westram 2020-02-25 16:12 Rev.: 18324


* extract flag check
- check other global symbols for duplication.
* comments.

11 lines of code changed in 1 file:

  • UNIT_TESTER: dupsymwarn.pl (+11 -2)
westram 2020-02-25 15:21 Rev.: 18323


* dupsym.lst:
- move into same dir as symbol files.
- remove VC ignores.
* cleanup + rename.

3 lines of code changed in 3 files:

  • UNIT_TESTER: .gitignore (-1), Makefile.suite (+1 -1), dupsymwarn.pl (+2 -7)
westram 2020-02-25 14:57 Rev.: 18322


* check symbol listings (generated for unittests) for unwanted duplicated symbols.
* be quiet if no duplicate detected.

134 lines of code changed in 5 files:

  • Makefile (+1)
  • UNIT_TESTER: .gitignore (+1), Makefile.suite (+19 -5), dupsymwarn.pl (new 112), make_symlist.sh (+1 -1)
westram 2020-02-25 11:16 Rev.: 18321


* fix linker flag (to warn about duplicate variable definitions) for OSX.
* move other decls of compiler/linker flags.

16 lines of code changed in 1 file:

  • Makefile (+16 -10)
westram 2020-02-24 18:26 Rev.: 18320


* warn about common symbols.

2 lines of code changed in 1 file:

  • Makefile (+2)
westram 2020-02-24 18:23 Rev.: 18319


* fix whitespace.

14 lines of code changed in 2 files:

  • ARBDB: adstring.cxx (+12 -12)
  • CORE: arb_strbuf.cxx (+2 -2)
westram 2020-02-24 18:21 Rev.: 18318


* rename test (test symbol defined twice).
* move testcode from ARBDB->CORE.

46 lines of code changed in 2 files:

  • ARBDB: adstring.cxx (-44)
  • CORE: arb_strbuf.cxx (+46)
westram 2020-02-24 18:17 Rev.: 18317


* update change log (#730)

1 lines of code changed in 1 file:

  • arb_CHANGES.txt (+1)
westram 2020-02-24 18:14 Rev.: 18316


* update build requirements.
* remove 32bit workaround.

3 lines of code changed in 1 file:

  • arb_INSTALL.txt (+3 -6)
westram 2020-02-21 16:34 Rev.: 18314


* define order types globally (fixes build for gcc 4.4.3).

0 lines of code changed in 2 files:

  • SL/SAICALC: saicalc.cxx (new)
westram 2020-02-21 16:32 Rev.: 18313


* define const member static (fixes build for gcc 4.6.3).

0 lines of code changed in 2 files:

  • SL/SAICALC: saiop.h (changed)
westram 2020-02-21 13:07 Rev.: 18311


* reintegrates 'saicalc' into 'trunk'
- implements #730
* adds: log:branches/saicalc@18141:18310

648 lines of code changed in 53 files:

  • Makefile (+3)
  • ARBDB: ad_t_prot.h (+2), aditem.cxx (+6 -2), adlang1.cxx (+22), arbdb.cxx (+1 -1), gb_aci.cxx (+6)
  • AWT: AWT_config_manager.cxx (+6), AWT_sel_boxes.cxx (+3), awt_config_manager.hxx (+1 -1)
  • CORE: arb_strarray.h (+2 -2)
  • EDIT4: ED4_block.cxx (+1 -1), ED4_cursor.cxx (+1 -1), ED4_dots.cxx (+1 -1), ED4_protein_2nd_structure.cxx (+2 -2)
  • HELP_SOURCE/oldhelp: aci.hlp (+5 -1), ad_extended.hlp (+11 -1), e4_block.hlp (+17 -9), e4_get_species.hlp (+1 -1), e4_modsai.hlp (+11 -4), e4_replace.hlp (+4 -4), phyl.hlp (+5), saicalc.hlp (new 175)
  • NTREE: AP_consensus.cxx (+1 -1), Makefile (+1), NT_extern.cxx (+3 -1), NT_ins_col.cxx (+1 -1), needs_libs (+1)
  • PARSIMONY: PARS_main.cxx (+2 -2)
  • PROBE: PT_io.cxx (+1 -1)
  • SL/FAST_ALIGNER: fast_aligner.cxx (+1 -1)
  • SL/FILTSEQEXP: FilteredExport.cxx (+1 -1)
  • SL/HELIX: BI_basepos.cxx (+1 -1), BI_helix.cxx (+2 -2)
  • SOURCE_TOOLS: arb_cleanup_patches.pl (+3 -3), dep.4dummy (+2 -1), dep.alltargets (+1), dep.libtargets (+1), generate_all_links.sh (+1)
  • TEMPLATES: ErrorOrType.h (+1), smartptr.h (+1 -1)
  • TOOLS: arb_export_rates.cxx (+2 -2)
  • UNIT_TESTER: reporter.pl (+7 -1), test_unit.h (+5 -4)
  • UNIT_TESTER/run: TEST_calcSAI_expectd.arb (new 188)
  • WINDOW: AW_button.cxx (+1 -1), AW_option_toggle.cxx (+1 -1), AW_window.cxx (+1 -1), aw_select.hxx (+3 -3)
  • lib/pictures: saiaci.fig (new 18), saicalc.fig (new 37), saichain.fig (new 34), saimatrix.fig (new 24), saitrans.fig (new 16)
westram 2020-02-20 17:30 Rev.: 18303


* enforce destruction order of shell created via {{{GB_shell4perl}}} and {{{GB_test_shell_closed}}} by storing the former in the latter
- move code from {{{~GB_shell4perl}}} into {{{close_global_shell}}}.
- call {{{close_global_shell}}} either from {{{~GB_shell4perl}}} or from {{{~GB_test_shell_closed}}}.
- fixes #508

33 lines of code changed in 4 files:

  • ARBDB: Makefile (+1), adperl.cxx (+1 -4), adperl.h (+4 -5), arbdb.cxx (+27 -3)
westram 2020-02-10 16:34 Rev.: 18284


* fix compiler warnings.
* do not use 'error' in error messages (to avoid duplicate 'error' term).
* fix use of GB_end_transaction (has to be called unconditionally for each started TA).
* remove TA around GB_save (refused since [18282])

10 lines of code changed in 1 file:

  • TOOLS: arb_2_bin.cxx (+10 -14)

(8583 more)

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