/trunk Developers: westram

Login name:
westram
Total Commits:
40,965 (86.7%)
Lines of Code:
1,174,526 (47.2%)
Most Recent Commit:
2019-11-21 16:26
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Activity in Directories

Directory Changes Lines of Code Lines per Change
Totals 40965 (100.0%) 1174526 (100.0%) 28.6
ARBDB/ 3826 (9.3%) 119393 (10.2%) 31.2
lib/nas/ 30 (0.1%) 66561 (5.7%) 2218.7
GDE/PHYLIP/ 146 (0.4%) 56082 (4.8%) 384.1
WINDOW/ 2573 (6.3%) 55340 (4.7%) 21.5
AWT/ 2180 (5.3%) 48688 (4.1%) 22.3
UNIT_TESTER/run/display/ 184 (0.4%) 46525 (4.0%) 252.8
NTREE/ 2432 (5.9%) 46011 (3.9%) 18.9
EDIT4/ 2309 (5.6%) 42582 (3.6%) 18.4
HELP_SOURCE/oldhelp/ 1828 (4.5%) 36099 (3.1%) 19.7
CONVERTALN/ 458 (1.1%) 29082 (2.5%) 63.4
TOOLS/ 694 (1.7%) 22778 (1.9%) 32.8
GDE/PHYLIP/doc/ 42 (0.1%) 21478 (1.8%) 511.3
UNIT_TESTER/run/ 118 (0.3%) 21343 (1.8%) 180.8
GENOM_IMPORT/ 379 (0.9%) 19946 (1.7%) 52.6
PARSIMONY/ 733 (1.8%) 18981 (1.6%) 25.8
PROBE/ 678 (1.7%) 18841 (1.6%) 27.7
DIST/ 723 (1.8%) 17210 (1.5%) 23.8
SOURCE_TOOLS/ 760 (1.9%) 15356 (1.3%) 20.2
GDE/PHYML/ 31 (0.1%) 15188 (1.3%) 489.9
/ 998 (2.4%) 14181 (1.2%) 14.2
GENOM/ 870 (2.1%) 14171 (1.2%) 16.2
MERGE/ 700 (1.7%) 13817 (1.2%) 19.7
SECEDIT/ 576 (1.4%) 13413 (1.1%) 23.2
GDE/PHYML20130708/phyml/ 9 (0.0%) 13410 (1.1%) 1490.0
SL/FAST_ALIGNER/ 294 (0.7%) 12378 (1.1%) 42.1
lib/ 59 (0.1%) 12300 (1.0%) 208.4
ARB_GDE/ 573 (1.4%) 11647 (1.0%) 20.3
PROBE_DESIGN/ 485 (1.2%) 10564 (0.9%) 21.7
CORE/ 509 (1.2%) 10227 (0.9%) 20.0
SL/TREEDISP/ 477 (1.2%) 10061 (0.9%) 21.0
NALIGNER/ 353 (0.9%) 9226 (0.8%) 26.1
TEMPLATES/ 302 (0.7%) 9225 (0.8%) 30.5
MULTI_PROBE/ 529 (1.3%) 9063 (0.8%) 17.1
UNIT_TESTER/ 498 (1.2%) 8733 (0.7%) 17.5
ptpan/ 124 (0.3%) 8692 (0.7%) 70.0
PROBE_WEB/CLIENT/ 267 (0.7%) 8512 (0.7%) 31.8
lib/pictures/ 401 (1.0%) 8400 (0.7%) 20.9
AWTI/ 373 (0.9%) 7958 (0.7%) 21.3
GDE/FASTDNAML/ 37 (0.1%) 7391 (0.6%) 199.7
AWTC/ 349 (0.9%) 6988 (0.6%) 20.0
PRIMER_DESIGN/ 281 (0.7%) 6874 (0.6%) 24.4
AISC/ 199 (0.5%) 6857 (0.6%) 34.4
EISPACK/ 16 (0.0%) 6736 (0.6%) 421.0
GDE/RAxML/ 61 (0.1%) 6650 (0.6%) 109.0
GDE/AxML/ 17 (0.0%) 6003 (0.5%) 353.1
lib/import/ 211 (0.5%) 5908 (0.5%) 28.0
HELP_SOURCE/ 218 (0.5%) 5664 (0.5%) 25.9
PHYLO/ 398 (1.0%) 4755 (0.4%) 11.9
ALIV3/ 174 (0.4%) 4669 (0.4%) 26.8
UNIT_TESTER/run/impexp/ 50 (0.1%) 4434 (0.4%) 88.6
CONSENSUS_TREE/ 311 (0.8%) 4411 (0.4%) 14.1
PROBE_SERVER/PROBE_GROUP/ 91 (0.2%) 4351 (0.4%) 47.8
PROBE_SET/ 307 (0.7%) 4323 (0.4%) 14.0
AISC_COM/C/ 280 (0.7%) 4058 (0.3%) 14.4
STAT/ 266 (0.6%) 3842 (0.3%) 14.4
ISLAND_HOPPING/ 132 (0.3%) 3810 (0.3%) 28.8
lib/pixmaps/ 302 (0.7%) 3582 (0.3%) 11.8
AISC_MKPTPS/ 108 (0.3%) 3567 (0.3%) 33.0
AISC_COM/AISC/ 108 (0.3%) 3467 (0.3%) 32.1
GDE/CLUSTALW/ 41 (0.1%) 3373 (0.3%) 82.2
RNA3D/ 297 (0.7%) 3355 (0.3%) 11.2
ARBDBPP/ 72 (0.2%) 2998 (0.3%) 41.6
SL/DB_QUERY/ 163 (0.4%) 2955 (0.3%) 18.1
SH/ 159 (0.4%) 2895 (0.2%) 18.2
lib/addlibs/ 13 (0.0%) 2859 (0.2%) 219.9
EDIT/ 91 (0.2%) 2810 (0.2%) 30.8
GDEHELP/MENUS/ 240 (0.6%) 2635 (0.2%) 10.9
GDE/MOLPHY/ 105 (0.3%) 2531 (0.2%) 24.1
SEQ_QUALITY/ 232 (0.6%) 2516 (0.2%) 10.8
PGT/ 178 (0.4%) 2495 (0.2%) 14.0
lib/import/nonformats/ 19 (0.0%) 2340 (0.2%) 123.1
UNIT_TESTER/run/consense/3/ 11 (0.0%) 2336 (0.2%) 212.3
lib/pictures/edit4/ 45 (0.1%) 2300 (0.2%) 51.1
SL/AP_TREE/ 147 (0.4%) 2285 (0.2%) 15.5
ALEIO/ 53 (0.1%) 2265 (0.2%) 42.7
PROBE_SERVER/PROBE_GROUP_DESIGN/ 46 (0.1%) 2253 (0.2%) 48.9
SL/DB_SCANNER/ 131 (0.3%) 2236 (0.2%) 17.0
util/ 208 (0.5%) 2231 (0.2%) 10.7
SL/PRONUC/ 122 (0.3%) 2217 (0.2%) 18.1
GL/glAW/ 72 (0.2%) 2108 (0.2%) 29.2
NAMES/ 120 (0.3%) 2062 (0.2%) 17.1
SL/ALILINK/ 32 (0.1%) 2061 (0.2%) 64.4
READSEQ/ 34 (0.1%) 2002 (0.2%) 58.8
lib/pixmaps/unused/ 147 (0.4%) 1993 (0.2%) 13.5
SL/TREE_READ/ 91 (0.2%) 1991 (0.2%) 21.8
SL/AW_NAME/ 168 (0.4%) 1822 (0.2%) 10.8
RNACMA/ 65 (0.2%) 1814 (0.2%) 27.9
PROBE_SERVER/ 85 (0.2%) 1809 (0.2%) 21.2
lib/pictures/consensus/ 13 (0.0%) 1667 (0.1%) 128.2
ORS_CGI/ 55 (0.1%) 1633 (0.1%) 29.6
SL/SEQIO/ 74 (0.2%) 1620 (0.1%) 21.8
SL/DB_UI/ 120 (0.3%) 1569 (0.1%) 13.0
GL/glpng/ 35 (0.1%) 1550 (0.1%) 44.2
SL/HELIX/ 90 (0.2%) 1500 (0.1%) 16.6
UNIT_TESTER/run/consense/2/ 13 (0.0%) 1468 (0.1%) 112.9
PERL2ARB/ 148 (0.4%) 1467 (0.1%) 9.9
SL/ITEMS/ 114 (0.3%) 1450 (0.1%) 12.7
PROBE_SERVER/WORKER/ 33 (0.1%) 1432 (0.1%) 43.3
SL/GUI_ALIVIEW/ 157 (0.4%) 1403 (0.1%) 8.9
SERVERCNTRL/ 125 (0.3%) 1392 (0.1%) 11.1
lib/pictures/awt/ 75 (0.2%) 1360 (0.1%) 18.1
TEST/ 40 (0.1%) 1327 (0.1%) 33.1
ARBDB2/ 29 (0.1%) 1309 (0.1%) 45.1
SL/CB/ 46 (0.1%) 1288 (0.1%) 28.0
TRS/ 37 (0.1%) 1279 (0.1%) 34.5
lib/pictures/merge/ 48 (0.1%) 1214 (0.1%) 25.2
lib/pixmaps/pgt/ 43 (0.1%) 1199 (0.1%) 27.8
ARBDB_COMPRESS/ 30 (0.1%) 1197 (0.1%) 39.9
GDE/CORE/ 94 (0.2%) 1193 (0.1%) 12.6
SEER/ 41 (0.1%) 1115 (0.1%) 27.1
GDEHELP/ 129 (0.3%) 1098 (0.1%) 8.5
XML/ 70 (0.2%) 1063 (0.1%) 15.1
SL/SEQUENCE/ 136 (0.3%) 995 (0.1%) 7.3
SL/NDS/ 79 (0.2%) 954 (0.1%) 12.0
PROBE_COM/ 98 (0.2%) 912 (0.1%) 9.3
TREE_COMPRESS/ 9 (0.0%) 909 (0.1%) 101.0
SL/TREE_WRITE/ 81 (0.2%) 879 (0.1%) 10.8
ARBDBS/ 29 (0.1%) 850 (0.1%) 29.3
UNIT_TESTER/run/consense/1/ 17 (0.0%) 813 (0.1%) 47.8
SL/GROUP_SEARCH/ 20 (0.0%) 783 (0.1%) 39.1
GDE/MOLPHY/doc/ 4 (0.0%) 758 (0.1%) 189.5
SL/LOCATION/ 27 (0.1%) 751 (0.1%) 27.8
PERL_SCRIPTS/ARBTOOLS/ 14 (0.0%) 731 (0.1%) 52.2
TREEGEN/ 123 (0.3%) 701 (0.1%) 5.6
DBSERVER/ 67 (0.2%) 695 (0.1%) 10.3
SL/FILTER/ 68 (0.2%) 692 (0.1%) 10.1
lib/macros/.checks/ 3 (0.0%) 675 (0.1%) 225.0
lib/pixmaps/icons/unused/ 32 (0.1%) 662 (0.1%) 20.6
SL/AW_HELIX/ 72 (0.2%) 657 (0.1%) 9.1
lib/pixmaps/edit/ 72 (0.2%) 632 (0.1%) 8.7
UNIT_TESTER/run/pars/ 52 (0.1%) 597 (0.1%) 11.4
PERL_SCRIPTS/SPECIES/ 24 (0.1%) 591 (0.1%) 24.6
UNIT_TESTER/run/help/ 7 (0.0%) 584 (0.0%) 83.4
ORS_SERVER/ 33 (0.1%) 580 (0.0%) 17.5
PROBE_SERVER/TREE_MERGE/ 14 (0.0%) 572 (0.0%) 40.8
PERL_SCRIPTS/MAUS/ 11 (0.0%) 549 (0.0%) 49.9
GDE/MUSCLE/src/unused/ 3 (0.0%) 548 (0.0%) 182.6
PROBE_WEB/SERVER/ 43 (0.1%) 523 (0.0%) 12.1
UNIT_TESTER/run/xsub/ 5 (0.0%) 511 (0.0%) 102.2
SOURCE_TOOLS/release/ 15 (0.0%) 507 (0.0%) 33.8
UNIT_TESTER/run/tools/ 43 (0.1%) 499 (0.0%) 11.6
SL/FILE_BUFFER/ 43 (0.1%) 495 (0.0%) 11.5
GDE/SUPPORT/ 26 (0.1%) 494 (0.0%) 19.0
PERL_SCRIPTS/GENOME/ 15 (0.0%) 478 (0.0%) 31.8
SL/REGEXPR/ 47 (0.1%) 473 (0.0%) 10.0
lib/pixmaps/edit/unused/ 48 (0.1%) 469 (0.0%) 9.7
GDE/RAxML8/ 10 (0.0%) 469 (0.0%) 46.9
lib/pictures/unused/ 11 (0.0%) 462 (0.0%) 42.0
NAMES_COM/ 70 (0.2%) 457 (0.0%) 6.5
lib/submit/ 2 (0.0%) 446 (0.0%) 223.0
lib/inputMasks/ 25 (0.1%) 436 (0.0%) 17.4
GDEHELP/HELP_WRITTEN/ 15 (0.0%) 431 (0.0%) 28.7
GDE/HGL_SRC/ 27 (0.1%) 418 (0.0%) 15.4
SL/MACROS/ 71 (0.2%) 401 (0.0%) 5.6
SL/TREE_ADMIN/ 34 (0.1%) 396 (0.0%) 11.6
SL/ARB_TREE/ 81 (0.2%) 396 (0.0%) 4.8
GDEHELP/HELP_PLAIN/ 11 (0.0%) 371 (0.0%) 33.7
lib/pictures/faligner/ 16 (0.0%) 369 (0.0%) 23.0
bin/ 27 (0.1%) 356 (0.0%) 13.1
SL/ROOTED_TREE/ 17 (0.0%) 350 (0.0%) 20.5
SL/NEIGHBOURJOIN/ 58 (0.1%) 350 (0.0%) 6.0
lib/pictures/pars/ 7 (0.0%) 335 (0.0%) 47.8
lib/pictures/query/ 17 (0.0%) 332 (0.0%) 19.5
SL/MATRIX/ 50 (0.1%) 326 (0.0%) 6.5
SL/PTCLEAN/ 39 (0.1%) 323 (0.0%) 8.2
TESTAWT/ 17 (0.0%) 317 (0.0%) 18.6
lib/pixmaps/icons/ 17 (0.0%) 310 (0.0%) 18.2
TESTVECTORFONT/ 15 (0.0%) 307 (0.0%) 20.4
lib/pictures/awtc/ 17 (0.0%) 305 (0.0%) 17.9
CAT/ 20 (0.0%) 300 (0.0%) 15.0
lib/pixmaps/merge/ 7 (0.0%) 295 (0.0%) 42.1
lib/pixmaps/print/ 20 (0.0%) 281 (0.0%) 14.0
HELP_SOURCE/genhelp/ 23 (0.1%) 267 (0.0%) 11.6
GDE/ 45 (0.1%) 258 (0.0%) 5.7
BUGEX/ 11 (0.0%) 250 (0.0%) 22.7
PERL_SCRIPTS/test/ 18 (0.0%) 239 (0.0%) 13.2
PERL_SCRIPTS/ARBTOOLS/IFTHELP/ 16 (0.0%) 237 (0.0%) 14.8
SL/CONSENSUS/ 17 (0.0%) 225 (0.0%) 13.2
SL/ 39 (0.1%) 210 (0.0%) 5.3
HEADERLIBS/ 11 (0.0%) 210 (0.0%) 19.0
SL/REFENTRIES/ 42 (0.1%) 204 (0.0%) 4.8
GDE/MrBAYES/mrbayes_3.2.1/ 7 (0.0%) 194 (0.0%) 27.7
lib/macros/ 26 (0.1%) 188 (0.0%) 7.2
GDE/CLUSTAL/ 24 (0.1%) 184 (0.0%) 7.6
BINDEP/ 44 (0.1%) 183 (0.0%) 4.1
UNIT_TESTER/valgrind/ 5 (0.0%) 182 (0.0%) 36.4
AISC_COM/ 9 (0.0%) 182 (0.0%) 20.2
SL/INSDEL/ 38 (0.1%) 180 (0.0%) 4.7
SL/TRANSLATE/ 39 (0.1%) 177 (0.0%) 4.5
PERLTOOLS/ 43 (0.1%) 176 (0.0%) 4.0
SL/ITEM_SHADER/ 38 (0.1%) 173 (0.0%) 4.5
PERL_SCRIPTS/SAI/ 5 (0.0%) 163 (0.0%) 32.6
CHIP/ 29 (0.1%) 160 (0.0%) 5.5
WETC/ 53 (0.1%) 157 (0.0%) 2.9
SOURCE_TOOLS/COMPILE_COMPAT/ 14 (0.0%) 154 (0.0%) 11.0
GDE/TREEPUZZLE/ 28 (0.1%) 154 (0.0%) 5.5
GDE/LOOPTOOL/ 26 (0.1%) 152 (0.0%) 5.8
lib/export/ 43 (0.1%) 145 (0.0%) 3.3
lib/pictures/cpro/ 6 (0.0%) 143 (0.0%) 23.8
lib/sellists/ 28 (0.1%) 139 (0.0%) 4.9
lib/pixmaps/print/unused/ 8 (0.0%) 138 (0.0%) 17.2
SL/XFERGUI/ 5 (0.0%) 136 (0.0%) 27.2
UNIT_TESTER/run/general/ 12 (0.0%) 134 (0.0%) 11.1
lib/macros/ARB/SEQ_DATA/ 4 (0.0%) 127 (0.0%) 31.7
PERL_SCRIPTS/BIOPERL/ 3 (0.0%) 123 (0.0%) 41.0
lib/pictures/phylo/ 9 (0.0%) 118 (0.0%) 13.1
GDE/TREEPUZZLE/src/ 14 (0.0%) 113 (0.0%) 8.0
lib/dtd/ 8 (0.0%) 111 (0.0%) 13.8
GL/ 14 (0.0%) 110 (0.0%) 7.8
AWDEMO/ 18 (0.0%) 107 (0.0%) 5.9
PERL_SCRIPTS/GENERAL/ 1 (0.0%) 99 (0.0%) 99.0
SL/FILTSEQEXP/ 15 (0.0%) 93 (0.0%) 6.2
ARBDB/EXAMPLES/ 19 (0.0%) 89 (0.0%) 4.6
PERL_SCRIPTS/lib/ 2 (0.0%) 80 (0.0%) 40.0
SOURCE_TOOLS/docs/ 1 (0.0%) 79 (0.0%) 79.0
GDE/PHYML20130708/ 11 (0.0%) 74 (0.0%) 6.7
lib/BUGS/ 5 (0.0%) 71 (0.0%) 14.2
SL/QUERY/ 14 (0.0%) 71 (0.0%) 5.0
ORS_COM/ 23 (0.1%) 66 (0.0%) 2.8
UNIT_TESTER/run/consense/4/ 6 (0.0%) 61 (0.0%) 10.1
lib/motifHack/ 8 (0.0%) 56 (0.0%) 7.0
SL/ALIVIEW/ 29 (0.1%) 54 (0.0%) 1.8
XML_IMPORT/IMP_TREE/ 27 (0.1%) 53 (0.0%) 1.9
XML_IMPORT/ 10 (0.0%) 47 (0.0%) 4.7
PROBE_WEB/ 4 (0.0%) 46 (0.0%) 11.5
lib/pictures/window/ 3 (0.0%) 45 (0.0%) 15.0
GDE/MAFFT/ 6 (0.0%) 43 (0.0%) 7.1
UNIT_TESTER/run/pvp/ 8 (0.0%) 41 (0.0%) 5.1
lib/arb_default/ 19 (0.0%) 40 (0.0%) 2.1
etc/ 11 (0.0%) 38 (0.0%) 3.4
GDE/MrBAYES/ 5 (0.0%) 37 (0.0%) 7.4
SL/XFERSET/ 9 (0.0%) 35 (0.0%) 3.8
GDE/MAFFT/mafft-7.055-with-extensions/core/ 2 (0.0%) 35 (0.0%) 17.5
PERL_SCRIPTS/ARBTOOLS/DOCUMENTED/ 3 (0.0%) 33 (0.0%) 11.0
GDE/MAFFT/mafft-7.053-without-extensions/ 1 (0.0%) 33 (0.0%) 33.0
RNA3D/Attic/OPENGL/ 14 (0.0%) 32 (0.0%) 2.2
HELP_SOURCE/oldhelp/prompt/ 2 (0.0%) 32 (0.0%) 16.0
PERL_SCRIPTS/ACI/ 1 (0.0%) 30 (0.0%) 30.0
HELP_SOURCE/oldhelp/seer/ 15 (0.0%) 30 (0.0%) 2.0
GDE/MUSCLE/ 5 (0.0%) 30 (0.0%) 6.0
UNIT_TESTER/run/trees/ 1 (0.0%) 27 (0.0%) 27.0
UNIT_TESTER/run/consense/6/ 2 (0.0%) 26 (0.0%) 13.0
lib/gde/ 3 (0.0%) 23 (0.0%) 7.6
UNIT_TESTER/run/distance/ 6 (0.0%) 19 (0.0%) 3.1
PERL_SCRIPTS/IFTHELP/ 10 (0.0%) 18 (0.0%) 1.8
GDE/FASTTREE/ 5 (0.0%) 18 (0.0%) 3.6
SL/PVP/ 5 (0.0%) 14 (0.0%) 2.8
doc/ 2 (0.0%) 11 (0.0%) 5.5
GDE/SATIVA/ 6 (0.0%) 11 (0.0%) 1.8
GDE/PROBCONS/ 3 (0.0%) 10 (0.0%) 3.3
GDE/TREEPUZZLE/doc/ 5 (0.0%) 9 (0.0%) 1.8
GDEHELP/DATA_FILES/ 2 (0.0%) 8 (0.0%) 4.0
UNIT_TESTER/sockets/ 3 (0.0%) 7 (0.0%) 2.3
GDE/PROBCONS/probcons/ 3 (0.0%) 7 (0.0%) 2.3
lib/pictures/unused/findcorr/ 27 (0.1%) 5 (0.0%) 0.1
BINDINGS/ 5 (0.0%) 5 (0.0%) 1.0
fig2dev/dev/ 62 (0.2%) 4 (0.0%) 0.0
fig2dev/ 68 (0.2%) 4 (0.0%) 0.0
UNIT_TESTER/run/diff/ 8 (0.0%) 4 (0.0%) 0.5
GDE/PHYML20130708/phyml/src/ 2 (0.0%) 4 (0.0%) 2.0
GDE/MAFFT/mafft-7.055-with-extensions/extensions/mxscarna_src/ 2 (0.0%) 4 (0.0%) 2.0
PERL_SCRIPTS/ARBTOOLS/TESTS/ 1 (0.0%) 3 (0.0%) 3.0
GDE/MAFFT/mafft-7.055-with-extensions/extensions/ 2 (0.0%) 2 (0.0%) 1.0
GDE/MAFFT/mafft-7.055-with-extensions/ 3 (0.0%) 2 (0.0%) 0.6
lib/motifHack/pixmaps/ 3 (0.0%) 1 (0.0%) 0.3
UNIT_TESTER/run/homefake/.arb_prop/ 1 (0.0%) 1 (0.0%) 1.0
UNIT_TESTER/run/fakehome/ 2 (0.0%) 1 (0.0%) 0.5
UNIT_TESTER/flags/ 2 (0.0%) 1 (0.0%) 0.5
PERL_SCRIPTS/MACROS/ 3 (0.0%) 1 (0.0%) 0.3
lib/rna3d/images/ 22 (0.1%) 0 (0.0%) 0.0
lib/rna3d/ 2 (0.0%) 0 (0.0%) 0.0
lib/pixmaps/seer/ 3 (0.0%) 0 (0.0%) 0.0
lib/pictures/unused/demo/ 27 (0.1%) 0 (0.0%) 0.0
lib/pictures/seer/ 5 (0.0%) 0 (0.0%) 0.0
lib/pictures/findcorr/ 20 (0.0%) 0 (0.0%) 0.0
lib/pictures/etc/ 1 (0.0%) 0 (0.0%) 0.0
lib/pictures/demo/ 27 (0.1%) 0 (0.0%) 0.0
lib/pictures/PARS/ 1 (0.0%) 0 (0.0%) 0.0
lib/icons/ 2 (0.0%) 0 (0.0%) 0.0
RNA3D/Attic/images/ 22 (0.1%) 0 (0.0%) 0.0
RNA3D/Attic/data/ 5 (0.0%) 0 (0.0%) 0.0
PGT/xslt/ 1 (0.0%) 0 (0.0%) 0.0
PERL_SCRIPTS/ 4 (0.0%) 0 (0.0%) 0.0
NIELS_F77/ 13 (0.0%) 0 (0.0%) 0.0
JAVALIB/ 1 (0.0%) 0 (0.0%) 0.0
GDEHELP/PHYLIP/ 42 (0.1%) 0 (0.0%) 0.0
GDE/TREEPUZZLE/data/ 5 (0.0%) 0 (0.0%) 0.0
GDE/SATIVA/sativa/epac/ 1 (0.0%) 0 (0.0%) 0.0
GDE/PHYML20130708/phyml/bin/ 2 (0.0%) 0 (0.0%) 0.0
GDE/MUSCLE/src/ 3 (0.0%) 0 (0.0%) 0.0
GDE/MOLPHY/utl/ 42 (0.1%) 0 (0.0%) 0.0
DUMMYINC/ 1 (0.0%) 0 (0.0%) 0.0
BERGEY/ 1 (0.0%) 0 (0.0%) 0.0

Activity of westram

Most Recent Commits

westram 2019-11-21 16:26 Rev.: 18216


* cleanup arb_probe_match:
- remove help for parameter {{{--db}}} (was removed with r13186)
- remove some coders editor preferences from code.

0 lines of code changed in 1 file:

  • TOOLS: arb_probe_match.cxx (-11)
westram 2019-11-18 15:45 Rev.: 18214


* stuff leak in test code.

1 lines of code changed in 1 file:

  • NTREE: NT_sort.cxx (+1)
westram 2019-11-18 12:15 Rev.: 18213


* added gcc 7.5

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2019-11-08 15:50 Rev.: 18211


* add new {{{QUERY_ITEM_TYPE}}} for organisms: {{{QUERY_ITEM_ORGANISM}}}

18 lines of code changed in 7 files:

  • SL/DB_QUERY: db_query.cxx (+5 -3)
  • SL/DB_SCANNER: db_scanner.cxx (+1 -1)
  • SL/DB_UI: info_window.h (+2 -10), ui_species.cxx (+2 -2)
  • SL/ITEMS: items.h (+5), itemtools.cxx (+2 -1), species.cxx (+1 -1)
westram 2019-11-08 15:47 Rev.: 18210


* organism selector iterates organisms only.

21 lines of code changed in 1 file:

  • SL/ITEMS: species.cxx (+21 -2)
westram 2019-11-08 15:45 Rev.: 18209


* fix item binding in ITEM_organism (now bound to AWAR_ORGANISM_NAME).
* fixes behavior of organism info window

14 lines of code changed in 2 files:

  • SL/DB_UI: ui_species.cxx (+1 -1)
  • SL/ITEMS: species.cxx (+13 -11)
westram 2019-11-08 15:27 Rev.: 18208


* full update from child 'fix' into 'trunk'
- finish tests introduced with [18200]
* adds: log:branches/fix@18194:18207

84 lines of code changed in 3 files:

  • ARBDB: adlang1.cxx (+5), gb_aci.cxx (+3)
  • NTREE: NT_sort.cxx (+76 -40)
westram 2019-11-07 14:45 Rev.: 18200


* reintegrates 'bugfix' into 'trunk'
- add unittest for "sort database"
- fix #820
* adds: log:branches/bugfix@18196:18199

85 lines of code changed in 3 files:

  • ARBDB: aditem.cxx (+1 -1)
  • NTREE: Makefile (+1), NT_sort.cxx (+83 -9)
westram 2019-10-30 11:41 Rev.: 18194


* full update from child 'fix' into 'trunk'
* adds: log:branches/fix@18190:18193

112 lines of code changed in 8 files:

  • GENOM: GEN_map.cxx (+1 -1)
  • PROBE_DESIGN: SaiProbeVisualization.cxx (+1 -1)
  • RNA3D: RNA3D_Interface.cxx (+1 -1)
  • SECEDIT: SEC_main.cxx (+1 -1)
  • SL/TREEDISP: TreeCallbacks.cxx (+7 -6)
  • WINDOW: AW_preset.cxx (+97 -39), Makefile (+1), aw_color_groups.hxx (+3 -4)
westram 2019-10-28 17:23 Rev.: 18186


* reintegrates 'fts' into 'trunk'
* adds: log:branches/fts@18177:18185

167 lines of code changed in 12 files:

  • ARBDB: adlang1.cxx (+6), gb_aci.h (+2 -2), gb_aci_impl.h (+8)
  • HELP_SOURCE/oldhelp: mg_species.hlp (+13 -1)
  • SL/XFERGUI: xfergui.cxx (+105 -10)
  • SL/XFERSET: Makefile (new), xferset.cxx (+17 -8), xferset.h (+2 -2)
  • lib/nas: .gitignore (+1)
  • lib/pictures: fts_ruledef.fig (+12 -12)
westram 2019-10-16 17:20 Rev.: 18176


* update outdated information in 'Synchronize IDs' window.
* some updates to related documentation.

18 lines of code changed in 3 files:

  • HELP_SOURCE/oldhelp: rename.hlp (+2 -2), sp_IDs.hlp (+7 -3)
  • lib/pictures/awtc: autoren.fig (+9 -7)
westram 2019-10-10 18:16 Rev.: 18168


* full update from child 'fix' into 'trunk'
* adds: log:branches/fix@18159:18167

3505 lines of code changed in 166 files:

  • Makefile (+4 -1)
  • SOURCE_TOOLS: sortfig.pl (new 261)
  • lib/pictures: RNA3D_ChangeMolecule.fig (+1 -180), RNA3D_DisplayBases.fig (+31 -224), RNA3D_DisplayHelices.fig (+23 -208), RNA3D_DisplayOptions.fig (+21 -214), RNA3D_SeqMapping.fig (+41 -234), ad_align.fig (+17 -17), ad_branch.fig (+26 -32), ad_cons_tree.fig (+8 -8), ad_conv.fig (+5 -5), ad_delof.fig (+5 -5), ad_ext.fig (+12 -12), ad_ext_group.fig (+5 -5), ad_fcrea.fig (+15 -8), ad_gen_create.fig (+28 -36), ad_kreo.fig (+12 -16), ad_one_tree.fig (+1 -1), ad_query.fig (+38 -56), ad_selManNam.fig (+5 -5), ad_spec.fig (+9 -9), ad_spec_nn.fig (+23 -23), ad_spec_nnm.fig (+32 -34), ad_tree.fig (+26 -28), arb_intro.fig (+35 -49), calltexe.fig (+23 -15), chimera_check.fig (+28 -30), compare_taxonomy.fig (+12 -12), compare_topo.fig (+13 -21), concatenate.fig (+11 -11), dbbrowser.fig (+20 -22), di_cancel.fig (+30 -27), di_clusters.fig (+19 -19), di_ge_ma.fig (+54 -56), displayField.fig (+6 -185), ed_al_ex.fig (+29 -22), ed_al_sp.fig (+86 -81), ed_key.fig (+15 -23), fileselect.fig (+8 -8), fts_ruledef.fig (+23 -23), fts_select.fig (+12 -14), gde3item.fig (+24 -24), gdeitem.fig (+23 -25), gdeitem_simple.fig (+9 -13), gen_options.fig (+37 -59), group_search.fig (+65 -67), group_trees.fig (+5 -5), help.fig (+6 -6), insdel.fig (+4 -4), insdel_sai.fig (+16 -16), item_shader_cfg.fig (+30 -38), iupac.fig (+25 -25), join_species.fig (+6 -6), load_box.fig (+15 -17), macro_select.fig (+19 -23), mark_configs.fig (+6 -6), merge_species.fig (+11 -15), message.fig (+9 -11), move_groups.fig (+44 -56), mp_results.fig (+25 -29), multiprobe.fig (+38 -46), nt_selection.fig (+23 -27), nt_sort.fig (+14 -18), optimize.fig (+4 -4), pd_admin.fig (+16 -16), pd_main.fig (+37 -39), pd_match.fig (+35 -37), pd_match_iupac.fig (+15 -19), pd_match_probe_collection.fig (+53 -57), pd_match_with_specificity.fig (+19 -21), pd_reslt.fig (+1 -1), pd_spec.fig (+23 -23), pm_spec.fig (+39 -43), prd_main.fig (+54 -72), probeSaiColors.fig (+26 -28), proteinViewer.fig (+97 -137), realign_dna.fig (+10 -10), saiColorRange.fig (+26 -30), save_as.fig (+20 -22), sec_bonddef.fig (+1 -1), sec_display.fig (+11 -11), sec_imexport.fig (+32 -25), sel_box.fig (+7 -7), sel_box_nds.fig (+9 -9), sel_box_tree.fig (+9 -9), sel_box_user.fig (+11 -11), select_simple.fig (+1 -1), seq_quality.fig (+36 -217), sl_l_box.fig (+7 -7), sl_s_box.fig (+8 -8), stat_main.fig (+17 -10), status.fig (+10 -12), submiss.fig (+13 -13), syncscroll.fig (+5 -5), trackali.fig (+6 -6), transpro.fig (+11 -11), tree_export.fig (+17 -21), visualizeSAI.fig (+22 -205)
  • lib/pictures/awt: align.fig (+24 -17), ascii_print.fig (+48 -41), col_statistic.fig (+23 -16), edit_config.fig (+13 -15), export.fig (+19 -23), export_db.fig (+22 -22), export_test.fig (+5 -5), field_sel.fig (+2 -2), field_sel_new.fig (+5 -5), filter.fig (+45 -40), import_db.fig (+26 -26), import_test.fig (+17 -19), manage_config.fig (+10 -10), nds.fig (+2 -2), print.fig (+53 -63), secExport.fig (+9 -9), srt_select.fig (+6 -6), tree_settings.fig (+11 -15), www.fig (+2 -2)
  • lib/pictures/awtc: autoren.fig (+22 -15), names_admin.fig (+4 -4)
  • lib/pictures/consensus: expert.fig (+57 -576), max_freq.fig (+24 -17)
  • lib/pictures/cpro: csp_2_gnuplot.fig (+16 -16), parsimony.fig (+20 -24)
  • lib/pictures/edit4: consensus.fig (+46 -561), create_seq.fig (+3 -3), create_seq_fc.fig (+5 -5), editmenu.fig (+91 -111), load_config.fig (+3 -3), load_sai.fig (+2 -2), message.fig (+17 -12), missbase.fig (+14 -16), modsai.fig (+13 -15), nds.fig (+9 -11), options.fig (+22 -22), replace.fig (+5 -5), save_config.fig (+11 -13), save_search.fig (+10 -10), search.fig (+46 -64), viewdiff.fig (+15 -17)
  • lib/pictures/faligner: faligner.fig (+38 -40), family_settings.fig (+6 -6), islandhopping.fig (+33 -41)
  • lib/pictures/merge: alignment.fig (+31 -24), configs.fig (+18 -20), extended.fig (+14 -14), main.fig (+16 -20), mg_def_gene_species_fields.fig (+28 -32), mg_mergetaggedfield.fig (+8 -8), mg_transfield.fig (+3 -3), names.fig (+19 -21), preserves.fig (+14 -14), seqcheck.fig (+13 -13), species.fig (+56 -64), trees.fig (+8 -8)
  • lib/pictures/pars: init.fig (+31 -24), kernlin.fig (+23 -23), tree_opti.fig (+10 -10)
  • lib/pictures/phylo: filter.fig (+18 -18), save_markerline.fig (+21 -14), select_ali.fig (+1 -1)
  • lib/pictures/query: color_loadsave.fig (+6 -6), colorize.fig (+3 -3), modify_fields.fig (+21 -21), set_protection.fig (+12 -14), write_fields.fig (+7 -7)
  • lib/pictures/window: advice.fig (+15 -21)
westram 2019-10-08 16:51 Rev.: 18159


* full update from child 'fix' into 'trunk'
- fix item name accessors ({{{GBT_get_name}}} + {{{GBT_get_name_or_description}}})
- add {{{null2empty}}}
* adds: log:branches/fix@18140:18158

273 lines of code changed in 75 files:

  • ARBDB: adChangeKey.cxx (+1 -1), adGene.cxx (+2 -2), ad_colorset.cxx (+2 -2), ad_load.cxx (+2 -2), ad_t_prot.h (+1 -1), adali.cxx (+22 -9), adhashtools.cxx (+2 -1), aditem.cxx (+13 -4), adlang1.cxx (+3 -2), adquery.cxx (-2)
  • ARB_GDE: GDE.cxx (+1 -1)
  • AWT: AWT_config_manager.cxx (+1 -1), AWT_db_browser.cxx (+1 -1), AWT_input_mask.cxx (+1 -1), AWT_sel_boxes.cxx (+4 -4)
  • AWTI: AWTI_edit.cxx (+1 -1)
  • CORE: arb_strbuf.h (+1 -1)
  • DIST: DI_clusters.cxx (+2 -3), DI_matr.cxx (+1 -1)
  • EDIT4: ED4_ProteinViewer.cxx (+2 -2), ED4_cursor.cxx (+2 -2), ED4_dots.cxx (+1 -1), ED4_naligner.cxx (+1 -1), ED4_no_class.cxx (+1 -1), ED4_protein_2nd_structure.cxx (+1 -1), ED4_terminal.cxx (+1 -1), ED4_visualizeSAI.cxx (+2 -2)
  • GENOM: EXP_interface.cxx (+1 -1), GEN_gene.cxx (+1 -1), GEN_interface.cxx (+2 -2), GEN_map.cxx (+7 -4)
  • MERGE: MG_adapt_ali.cxx (+1 -1), MG_checkfield.cxx (+1 -1), MG_gene_species.cxx (+2 -2), MG_preserves.cxx (+2 -2), MG_species.cxx (+35 -26)
  • MULTI_PROBE: MP_mo_liste.cxx (+1 -1), MP_noclass.cxx (+1 -1)
  • NTREE: NT_concatenate.cxx (+12 -11), NT_dbrepair.cxx (+1 -1), NT_edconf.cxx (+1 -1), NT_main.cxx (+1 -1), NT_shadeTree.cxx (+1 -1), ScrollSynchronizer.cxx (+1 -2), ad_spec.cxx (+1 -1)
  • PARSIMONY: PARS_main.cxx (+5 -5)
  • PHYLO: PH_data.cxx (+1 -1)
  • PROBE: PT_io.cxx (+3 -3), PT_new_design.cxx (+2 -2)
  • PROBE_DESIGN: probe_design.cxx (+2 -2)
  • RNACMA: AlignedSequenceLoader.cxx (+1 -1)
  • SL/ALILINK: TranslateRealign.cxx (+1 -1)
  • SL/AW_NAME: AW_rename.cxx (+9 -9)
  • SL/DB_QUERY: db_query.cxx (+2 -3)
  • SL/DB_SCANNER: db_scanner.cxx (+19 -12)
  • SL/DB_UI: ui_species.cxx (+2 -2)
  • SL/FAST_ALIGNER: fast_aligner.cxx (+25 -21)
  • SL/FILTSEQEXP: FilteredExport.cxx (+4 -4)
  • SL/GROUP_SEARCH: group_search.cxx (+1 -1)
  • SL/GUI_ALIVIEW: AWT_filter.cxx (+2 -1), ColumnStat.cxx (+1 -1)
  • SL/INSDEL: insdel.cxx (+4 -3)
  • SL/MACROS: dbserver.cxx (+1 -1)
  • SL/PTCLEAN: ptclean.cxx (+2 -2)
  • SL/SEQIO: seq_export.cxx (+1 -1)
  • SL/SEQUENCE: AP_sequence.cxx (+5 -5)
  • SL/TRANSLATE: Translate.cxx (+1 -1)
  • SL/TREEDISP: TreeCallbacks.cxx (+3 -4), TreeDisplay.cxx (+1 -1)
  • SL/XFERSET: xferset.cxx (+10 -7)
  • TEMPLATES: dupstr.h (+6)
  • TOOLS: arb_gene_probe.cxx (+12 -7)
  • UNIT_TESTER: test_unit.h (+1 -1)
  • WINDOW: AW_preset.cxx (+1 -1), AW_question.cxx (+1 -1)
westram 2019-10-07 15:40 Rev.: 18149


* document howto "transport" IDs stored in fields to a new nameserver.

10 lines of code changed in 1 file:

  • HELP_SOURCE/oldhelp: next_neighbours_listed.hlp (+10 -1)
westram 2019-10-07 14:01 Rev.: 18148


* update

1 lines of code changed in 1 file:

  • arb_CHANGES.txt (+1)
westram 2019-10-07 13:56 Rev.: 18147


* add new ACI commands {{{findspec}}}, {{{findacc}}} + {{{findgene}}}
- allow to find species and genes by name (and species by acc)
- add tests (not for findgene)
- document

143 lines of code changed in 5 files:

  • ARBDB: adGene.cxx (+1 -1), adlang1.cxx (+103 -22), adquery.cxx (+1 -1), gb_aci.cxx (+20 -1)
  • HELP_SOURCE/oldhelp: aci.hlp (+18)
westram 2019-10-07 13:50 Rev.: 18146


* publish {{{GBT_expect_item_rel_item_data}}}.
* implement {{{GEN_find_gene_rel_gene_data}}} based on {{{GBT_find_item_rel_item_data}}}.
* add {{{GEN_expect_gene}}}.

13 lines of code changed in 4 files:

  • ARBDB: adGene.cxx (+10 -5), ad_prot.h (+1), ad_t_prot.h (+1), aditem.cxx (+1 -1)
westram 2019-10-07 13:46 Rev.: 18145


* annotate error message from "modify fields of queried" with itemname
- allows to track down reason of failure.

13 lines of code changed in 1 file:

  • SL/DB_QUERY: db_query.cxx (+13 -1)
westram 2019-10-03 09:08 Rev.: 18140


* full update from child 'fix' into 'trunk'
- improve target 'cleanRelinkable'
- fix crash in inotify file tracker (occurred when moving a tracked file)
- minor tweaks for fts
* adds: log:branches/fix@18131:18139

100 lines of code changed in 11 files:

  • Makefile (+3 -1)
  • CORE: Makefile (+2), arb_misc.cxx (+17)
  • GDE/RAxML8: Makefile (+4)
  • PROBE_SET: Makefile (+4 -2)
  • SL/XFERGUI: Makefile (new), xfergui.cxx (new)
  • TOOLS: arb_export_sequences.cxx (+1 -1)
  • WINDOW: AW_inotify.cxx (+38 -17)
westram 2019-10-01 09:30 Rev.: 18128


* reintegrates 'fix' into 'trunk'
- effectively merges [17619]
* adds: log:branches/fix@17596,17618:18127

51 lines of code changed in 3 files:

  • arb_README.txt (+49 -34)
  • WINDOW: AW_xfont.cxx (+1 -1), aw_def.hxx (+1 -1)

(8557 more)

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