/trunk Developers: westram

Login name:
westram
Total Commits:
43,691 (87.3%)
Lines of Code:
1,206,841 (48.1%)
Most Recent Commit:
2024-10-01 18:45
Tweet this:
Tweet this

Activity by Clock Time

Activity by Hour of Day for westram

Activity by Day of Week for westram

Activity in Directories

Directory Changes Lines of Code Lines per Change
Totals 43691 (100.0%) 1206841 (100.0%) 27.6
ARBDB/ 3997 (9.1%) 120743 (10.0%) 30.2
lib/nas/ 30 (0.1%) 66561 (5.5%) 2218.7
GDE/PHYLIP/ 196 (0.4%) 57426 (4.8%) 292.9
WINDOW/ 2662 (6.1%) 55943 (4.6%) 21.0
AWT/ 2230 (5.1%) 49066 (4.1%) 22.0
NTREE/ 2550 (5.8%) 48557 (4.0%) 19.0
UNIT_TESTER/run/display/ 204 (0.5%) 46531 (3.9%) 228.0
EDIT4/ 2475 (5.7%) 45223 (3.7%) 18.2
UNIT_TESTER/run/ 133 (0.3%) 30642 (2.5%) 230.3
HELP_SOURCE/oldhelp/ 2246 (5.1%) 30060 (2.5%) 13.3
CONVERTALN/ 463 (1.1%) 29090 (2.4%) 62.8
TOOLS/ 735 (1.7%) 23559 (2.0%) 32.0
GDE/PHYLIP/doc/ 42 (0.1%) 21478 (1.8%) 511.3
GENOM_IMPORT/ 389 (0.9%) 19995 (1.7%) 51.4
PARSIMONY/ 752 (1.7%) 19035 (1.6%) 25.3
PROBE/ 706 (1.6%) 18996 (1.6%) 26.9
DIST/ 757 (1.7%) 17561 (1.5%) 23.1
SOURCE_TOOLS/ 824 (1.9%) 16036 (1.3%) 19.4
/ 1092 (2.5%) 15441 (1.3%) 14.1
GDE/PHYML/ 48 (0.1%) 15276 (1.3%) 318.2
GENOM/ 887 (2.0%) 14229 (1.2%) 16.0
MERGE/ 735 (1.7%) 14078 (1.2%) 19.1
SECEDIT/ 603 (1.4%) 13634 (1.1%) 22.6
GDE/PHYML20130708/phyml/ 10 (0.0%) 13413 (1.1%) 1341.3
SL/FAST_ALIGNER/ 318 (0.7%) 12517 (1.0%) 39.3
lib/ 60 (0.1%) 12302 (1.0%) 205.0
ARB_GDE/ 594 (1.4%) 11758 (1.0%) 19.7
CORE/ 574 (1.3%) 11124 (0.9%) 19.3
PROBE_DESIGN/ 502 (1.1%) 11035 (0.9%) 21.9
SL/TREEDISP/ 515 (1.2%) 10473 (0.9%) 20.3
TEMPLATES/ 332 (0.8%) 9631 (0.8%) 29.0
MULTI_PROBE/ 560 (1.3%) 9440 (0.8%) 16.8
UNIT_TESTER/ 538 (1.2%) 9258 (0.8%) 17.2
NALIGNER/ 360 (0.8%) 9255 (0.8%) 25.7
ptpan/ 128 (0.3%) 8692 (0.7%) 67.9
lib/pictures/ 417 (1.0%) 8661 (0.7%) 20.7
PROBE_WEB/CLIENT/ 267 (0.6%) 8512 (0.7%) 31.8
AWTI/ 381 (0.9%) 8000 (0.7%) 20.9
GDE/FASTDNAML/ 42 (0.1%) 7406 (0.6%) 176.3
EISPACK/ 20 (0.0%) 7294 (0.6%) 364.7
AWTC/ 359 (0.8%) 7025 (0.6%) 19.5
PRIMER_DESIGN/ 291 (0.7%) 6913 (0.6%) 23.7
AISC/ 208 (0.5%) 6893 (0.6%) 33.1
GDE/RAxML/ 76 (0.2%) 6847 (0.6%) 90.0
GDE/AxML/ 21 (0.0%) 6023 (0.5%) 286.8
CONSENSUS_TREE/ 328 (0.8%) 5967 (0.5%) 18.1
lib/import/ 211 (0.5%) 5908 (0.5%) 28.0
HELP_SOURCE/ 234 (0.5%) 5720 (0.5%) 24.4
PHYLO/ 406 (0.9%) 4803 (0.4%) 11.8
ALIV3/ 174 (0.4%) 4669 (0.4%) 26.8
UNIT_TESTER/run/impexp/ 51 (0.1%) 4435 (0.4%) 86.9
PROBE_SERVER/PROBE_GROUP/ 91 (0.2%) 4351 (0.4%) 47.8
PROBE_SET/ 312 (0.7%) 4330 (0.4%) 13.8
AISC_COM/C/ 283 (0.6%) 4069 (0.3%) 14.3
STAT/ 280 (0.6%) 3887 (0.3%) 13.8
ISLAND_HOPPING/ 139 (0.3%) 3828 (0.3%) 27.5
GDE/CLUSTALW/ 62 (0.1%) 3728 (0.3%) 60.1
lib/pixmaps/ 302 (0.7%) 3582 (0.3%) 11.8
AISC_MKPTPS/ 111 (0.3%) 3574 (0.3%) 32.1
AISC_COM/AISC/ 112 (0.3%) 3501 (0.3%) 31.2
RNA3D/ 308 (0.7%) 3486 (0.3%) 11.3
SH/ 190 (0.4%) 3377 (0.3%) 17.7
GDEHELP/MENUS/ 260 (0.6%) 3303 (0.3%) 12.7
SL/DB_QUERY/ 177 (0.4%) 3004 (0.2%) 16.9
ARBDBPP/ 72 (0.2%) 2998 (0.2%) 41.6
lib/addlibs/ 13 (0.0%) 2859 (0.2%) 219.9
SEQ_QUALITY/ 258 (0.6%) 2850 (0.2%) 11.0
EDIT/ 91 (0.2%) 2810 (0.2%) 30.8
util/ 232 (0.5%) 2549 (0.2%) 10.9
GDE/MOLPHY/ 105 (0.2%) 2531 (0.2%) 24.1
PGT/ 178 (0.4%) 2495 (0.2%) 14.0
PERL2ARB/ 166 (0.4%) 2412 (0.2%) 14.5
lib/import/nonformats/ 19 (0.0%) 2340 (0.2%) 123.1
UNIT_TESTER/run/consense/3/ 11 (0.0%) 2336 (0.2%) 212.3
lib/pictures/edit4/ 47 (0.1%) 2324 (0.2%) 49.4
SL/AP_TREE/ 153 (0.4%) 2298 (0.2%) 15.0
RNACMA/ 84 (0.2%) 2285 (0.2%) 27.2
ALEIO/ 53 (0.1%) 2265 (0.2%) 42.7
PROBE_SERVER/PROBE_GROUP_DESIGN/ 46 (0.1%) 2253 (0.2%) 48.9
SL/DB_SCANNER/ 137 (0.3%) 2252 (0.2%) 16.4
SL/PRONUC/ 129 (0.3%) 2226 (0.2%) 17.2
GL/glAW/ 74 (0.2%) 2110 (0.2%) 28.5
SL/ALILINK/ 40 (0.1%) 2099 (0.2%) 52.4
NAMES/ 123 (0.3%) 2068 (0.2%) 16.8
READSEQ/ 45 (0.1%) 2059 (0.2%) 45.7
SL/TREE_READ/ 97 (0.2%) 2004 (0.2%) 20.6
SL/AW_NAME/ 180 (0.4%) 1994 (0.2%) 11.0
lib/pixmaps/unused/ 147 (0.3%) 1993 (0.2%) 13.5
PROBE_SERVER/ 85 (0.2%) 1809 (0.1%) 21.2
SL/HELIX/ 113 (0.3%) 1786 (0.1%) 15.8
lib/pictures/consensus/ 13 (0.0%) 1667 (0.1%) 128.2
SL/SEQIO/ 81 (0.2%) 1640 (0.1%) 20.2
ORS_CGI/ 55 (0.1%) 1633 (0.1%) 29.6
SL/ITEMS/ 126 (0.3%) 1617 (0.1%) 12.8
SL/DB_UI/ 130 (0.3%) 1598 (0.1%) 12.2
GL/glpng/ 38 (0.1%) 1554 (0.1%) 40.8
SERVERCNTRL/ 132 (0.3%) 1522 (0.1%) 11.5
UNIT_TESTER/run/consense/2/ 13 (0.0%) 1468 (0.1%) 112.9
SL/GUI_ALIVIEW/ 175 (0.4%) 1449 (0.1%) 8.2
PROBE_SERVER/WORKER/ 33 (0.1%) 1432 (0.1%) 43.3
SL/NDS/ 92 (0.2%) 1364 (0.1%) 14.8
lib/pictures/awt/ 75 (0.2%) 1360 (0.1%) 18.1
TEST/ 40 (0.1%) 1327 (0.1%) 33.1
ARBDB2/ 29 (0.1%) 1309 (0.1%) 45.1
SL/CB/ 47 (0.1%) 1289 (0.1%) 27.4
TRS/ 37 (0.1%) 1279 (0.1%) 34.5
GDEHELP/ 147 (0.3%) 1240 (0.1%) 8.4
lib/pictures/merge/ 48 (0.1%) 1214 (0.1%) 25.2
lib/pixmaps/pgt/ 43 (0.1%) 1199 (0.1%) 27.8
ARBDB_COMPRESS/ 30 (0.1%) 1197 (0.1%) 39.9
GDE/CORE/ 94 (0.2%) 1193 (0.1%) 12.6
PERL_SCRIPTS/SPECIES/ 30 (0.1%) 1149 (0.1%) 38.3
SEER/ 41 (0.1%) 1115 (0.1%) 27.1
SL/TREE_WRITE/ 95 (0.2%) 1083 (0.1%) 11.4
XML/ 72 (0.2%) 1069 (0.1%) 14.8
GDE/SUPPORT/ 44 (0.1%) 1063 (0.1%) 24.1
SL/SEQUENCE/ 141 (0.3%) 1003 (0.1%) 7.1
PROBE_COM/ 99 (0.2%) 913 (0.1%) 9.2
TREE_COMPRESS/ 9 (0.0%) 909 (0.1%) 101.0
SL/AW_HELIX/ 86 (0.2%) 904 (0.1%) 10.5
ARBDBS/ 29 (0.1%) 850 (0.1%) 29.3
SL/GROUP_SEARCH/ 28 (0.1%) 846 (0.1%) 30.2
UNIT_TESTER/run/consense/1/ 17 (0.0%) 813 (0.1%) 47.8
PERL_SCRIPTS/ARBTOOLS/ 18 (0.0%) 801 (0.1%) 44.5
GDE/MOLPHY/doc/ 4 (0.0%) 758 (0.1%) 189.5
SL/LOCATION/ 29 (0.1%) 754 (0.1%) 26.0
TREEGEN/ 127 (0.3%) 707 (0.1%) 5.5
DBSERVER/ 71 (0.2%) 701 (0.1%) 9.8
SL/FILTER/ 70 (0.2%) 696 (0.1%) 9.9
lib/macros/.checks/ 3 (0.0%) 675 (0.1%) 225.0
lib/pixmaps/icons/unused/ 32 (0.1%) 662 (0.1%) 20.6
lib/pixmaps/edit/ 72 (0.2%) 632 (0.1%) 8.7
HELP_SOURCE/source/ 56 (0.1%) 606 (0.1%) 10.8
UNIT_TESTER/run/help/ 11 (0.0%) 600 (0.0%) 54.5
UNIT_TESTER/run/pars/ 52 (0.1%) 597 (0.0%) 11.4
lib/macros/ 32 (0.1%) 586 (0.0%) 18.3
ORS_SERVER/ 33 (0.1%) 580 (0.0%) 17.5
GDEHELP/HELP_WRITTEN/ 27 (0.1%) 579 (0.0%) 21.4
PROBE_SERVER/TREE_MERGE/ 14 (0.0%) 572 (0.0%) 40.8
SOURCE_TOOLS/release/ 18 (0.0%) 557 (0.0%) 30.9
PERL_SCRIPTS/MAUS/ 11 (0.0%) 549 (0.0%) 49.9
GDE/MUSCLE/src/unused/ 3 (0.0%) 548 (0.0%) 182.6
PROBE_WEB/SERVER/ 43 (0.1%) 523 (0.0%) 12.1
UNIT_TESTER/run/xsub/ 5 (0.0%) 511 (0.0%) 102.2
SL/MACROS/ 81 (0.2%) 508 (0.0%) 6.2
UNIT_TESTER/run/tools/ 44 (0.1%) 499 (0.0%) 11.3
GDE/RAxML8/ 16 (0.0%) 497 (0.0%) 31.0
SL/FILE_BUFFER/ 43 (0.1%) 495 (0.0%) 11.5
PERL_SCRIPTS/GENOME/ 16 (0.0%) 479 (0.0%) 29.9
SL/REGEXPR/ 52 (0.1%) 478 (0.0%) 9.1
lib/pixmaps/edit/unused/ 48 (0.1%) 469 (0.0%) 9.7
lib/pictures/unused/ 11 (0.0%) 462 (0.0%) 42.0
NAMES_COM/ 72 (0.2%) 460 (0.0%) 6.3
lib/submit/ 2 (0.0%) 446 (0.0%) 223.0
lib/inputMasks/ 25 (0.1%) 436 (0.0%) 17.4
GDE/HGL_SRC/ 27 (0.1%) 418 (0.0%) 15.4
SL/TREE_ADMIN/ 37 (0.1%) 406 (0.0%) 10.9
SL/ARB_TREE/ 86 (0.2%) 401 (0.0%) 4.6
SL/NEIGHBOURJOIN/ 68 (0.2%) 392 (0.0%) 5.7
GDEHELP/HELP_PLAIN/ 12 (0.0%) 372 (0.0%) 31.0
SL/MATRIX/ 59 (0.1%) 370 (0.0%) 6.2
lib/pictures/faligner/ 16 (0.0%) 369 (0.0%) 23.0
lib/pictures/query/ 18 (0.0%) 368 (0.0%) 20.4
bin/ 32 (0.1%) 361 (0.0%) 11.2
SL/ROOTED_TREE/ 17 (0.0%) 350 (0.0%) 20.5
lib/pictures/pars/ 7 (0.0%) 335 (0.0%) 47.8
SL/PTCLEAN/ 41 (0.1%) 330 (0.0%) 8.0
GDE/FASTTREE/ 13 (0.0%) 328 (0.0%) 25.2
lib/pictures/awtc/ 19 (0.0%) 327 (0.0%) 17.2
TESTAWT/ 17 (0.0%) 317 (0.0%) 18.6
lib/pixmaps/icons/ 17 (0.0%) 310 (0.0%) 18.2
GDE/CLUSTAL/ 37 (0.1%) 309 (0.0%) 8.3
TESTVECTORFONT/ 15 (0.0%) 307 (0.0%) 20.4
CAT/ 20 (0.0%) 300 (0.0%) 15.0
lib/pixmaps/merge/ 7 (0.0%) 295 (0.0%) 42.1
GDE/ 50 (0.1%) 287 (0.0%) 5.7
lib/pixmaps/print/ 20 (0.0%) 281 (0.0%) 14.0
HELP_SOURCE/genhelp/ 24 (0.1%) 272 (0.0%) 11.3
BUGEX/ 12 (0.0%) 251 (0.0%) 20.9
PERL_SCRIPTS/test/ 18 (0.0%) 239 (0.0%) 13.2
PERL_SCRIPTS/ARBTOOLS/IFTHELP/ 16 (0.0%) 237 (0.0%) 14.8
SL/ 42 (0.1%) 227 (0.0%) 5.4
SL/CONSENSUS/ 17 (0.0%) 225 (0.0%) 13.2
WETC/ 59 (0.1%) 224 (0.0%) 3.7
GDE/MAFFT/mafft-7.055-with-extensions/core/ 7 (0.0%) 224 (0.0%) 32.0
GDE/TREEPUZZLE/src/ 24 (0.1%) 219 (0.0%) 9.1
HEADERLIBS/ 12 (0.0%) 213 (0.0%) 17.7
SL/INSDEL/ 44 (0.1%) 212 (0.0%) 4.8
SL/REFENTRIES/ 46 (0.1%) 208 (0.0%) 4.5
GDE/MrBAYES/mrbayes_3.2.1/ 14 (0.0%) 207 (0.0%) 14.7
PERLTOOLS/ 49 (0.1%) 191 (0.0%) 3.8
BINDEP/ 45 (0.1%) 187 (0.0%) 4.1
AISC_COM/ 10 (0.0%) 183 (0.0%) 18.3
UNIT_TESTER/valgrind/ 5 (0.0%) 182 (0.0%) 36.4
SL/TRANSLATE/ 44 (0.1%) 182 (0.0%) 4.1
SL/ITEM_SHADER/ 43 (0.1%) 180 (0.0%) 4.1
PERL_SCRIPTS/SAI/ 5 (0.0%) 163 (0.0%) 32.6
CHIP/ 29 (0.1%) 160 (0.0%) 5.5
SOURCE_TOOLS/COMPILE_COMPAT/ 16 (0.0%) 157 (0.0%) 9.8
GDE/TREEPUZZLE/ 29 (0.1%) 155 (0.0%) 5.3
GDE/LOOPTOOL/ 26 (0.1%) 152 (0.0%) 5.8
lib/export/ 43 (0.1%) 145 (0.0%) 3.3
lib/pictures/cpro/ 6 (0.0%) 143 (0.0%) 23.8
SL/XFERGUI/ 9 (0.0%) 143 (0.0%) 15.8
lib/sellists/ 29 (0.1%) 142 (0.0%) 4.8
lib/pixmaps/print/unused/ 8 (0.0%) 138 (0.0%) 17.2
UNIT_TESTER/run/general/ 13 (0.0%) 136 (0.0%) 10.4
lib/macros/ARB/SEQ_DATA/ 4 (0.0%) 127 (0.0%) 31.7
PERL_SCRIPTS/BIOPERL/ 3 (0.0%) 123 (0.0%) 41.0
lib/pictures/phylo/ 9 (0.0%) 118 (0.0%) 13.1
GL/ 16 (0.0%) 114 (0.0%) 7.1
lib/dtd/ 8 (0.0%) 111 (0.0%) 13.8
AWDEMO/ 18 (0.0%) 107 (0.0%) 5.9
PERL_SCRIPTS/GENERAL/ 1 (0.0%) 99 (0.0%) 99.0
SL/FILTSEQEXP/ 18 (0.0%) 97 (0.0%) 5.3
ARBDB/EXAMPLES/ 19 (0.0%) 89 (0.0%) 4.6
PERL_SCRIPTS/lib/ 3 (0.0%) 81 (0.0%) 27.0
SOURCE_TOOLS/docs/ 1 (0.0%) 79 (0.0%) 79.0
PERL_SCRIPTS/ARBTOOLS/TESTS/ 2 (0.0%) 78 (0.0%) 39.0
SL/QUERY/ 16 (0.0%) 76 (0.0%) 4.7
GDE/PHYML20130708/ 12 (0.0%) 75 (0.0%) 6.2
lib/BUGS/ 5 (0.0%) 71 (0.0%) 14.2
ORS_COM/ 23 (0.1%) 66 (0.0%) 2.8
UNIT_TESTER/run/consense/4/ 6 (0.0%) 61 (0.0%) 10.1
SL/ALIVIEW/ 33 (0.1%) 58 (0.0%) 1.7
lib/motifHack/ 8 (0.0%) 56 (0.0%) 7.0
XML_IMPORT/IMP_TREE/ 36 (0.1%) 53 (0.0%) 1.4
XML_IMPORT/ 12 (0.0%) 47 (0.0%) 3.9
PROBE_WEB/ 4 (0.0%) 46 (0.0%) 11.5
lib/pictures/window/ 3 (0.0%) 45 (0.0%) 15.0
GDE/MAFFT/ 7 (0.0%) 44 (0.0%) 6.2
UNIT_TESTER/run/pvp/ 8 (0.0%) 41 (0.0%) 5.1
lib/arb_default/ 19 (0.0%) 40 (0.0%) 2.1
SL/XFERSET/ 12 (0.0%) 39 (0.0%) 3.2
etc/ 11 (0.0%) 38 (0.0%) 3.4
UNIT_TESTER/run/distance/ 11 (0.0%) 38 (0.0%) 3.4
GDE/MrBAYES/ 6 (0.0%) 38 (0.0%) 6.3
GDE/MUSCLE/ 6 (0.0%) 37 (0.0%) 6.1
BINDINGS/PERL/ 1 (0.0%) 37 (0.0%) 37.0
PERL_SCRIPTS/ARBTOOLS/DOCUMENTED/ 3 (0.0%) 33 (0.0%) 11.0
GDE/MAFFT/mafft-7.053-without-extensions/ 1 (0.0%) 33 (0.0%) 33.0
lib/gde/ 5 (0.0%) 32 (0.0%) 6.4
SL/PVP/ 11 (0.0%) 32 (0.0%) 2.9
RNA3D/Attic/OPENGL/ 14 (0.0%) 32 (0.0%) 2.2
HELP_SOURCE/oldhelp/prompt/ 3 (0.0%) 32 (0.0%) 10.6
PERL_SCRIPTS/ACI/ 1 (0.0%) 30 (0.0%) 30.0
HELP_SOURCE/oldhelp/seer/ 15 (0.0%) 30 (0.0%) 2.0
UNIT_TESTER/run/trees/ 1 (0.0%) 27 (0.0%) 27.0
GDE/SATIVA/ 14 (0.0%) 27 (0.0%) 1.9
UNIT_TESTER/run/consense/6/ 2 (0.0%) 26 (0.0%) 13.0
SL/SAICALC/ 14 (0.0%) 25 (0.0%) 1.7
GDE/PROBCONS/ 5 (0.0%) 20 (0.0%) 4.0
PERL_SCRIPTS/IFTHELP/ 10 (0.0%) 18 (0.0%) 1.8
GDE/PROBCONS/probcons/ 7 (0.0%) 18 (0.0%) 2.5
GDE/PHYML20130708/phyml/src/ 5 (0.0%) 13 (0.0%) 2.6
GDE/MAFFT/mafft-7.055-with-extensions/extensions/mxscarna_src/ 3 (0.0%) 13 (0.0%) 4.3
doc/ 2 (0.0%) 11 (0.0%) 5.5
GDE/TREEPUZZLE/doc/ 5 (0.0%) 9 (0.0%) 1.8
GDEHELP/DATA_FILES/ 2 (0.0%) 8 (0.0%) 4.0
GDE/SINA/builddir/src/ 3 (0.0%) 8 (0.0%) 2.6
BINDINGS/ 6 (0.0%) 8 (0.0%) 1.3
UNIT_TESTER/sockets/ 3 (0.0%) 7 (0.0%) 2.3
GDE/SINA/ 4 (0.0%) 6 (0.0%) 1.5
lib/pictures/unused/findcorr/ 27 (0.1%) 5 (0.0%) 0.1
fig2dev/dev/ 62 (0.1%) 4 (0.0%) 0.0
fig2dev/ 68 (0.2%) 4 (0.0%) 0.0
UNIT_TESTER/run/diff/ 8 (0.0%) 4 (0.0%) 0.5
GDE/MAFFT/mafft-7.055-with-extensions/extensions/ 3 (0.0%) 4 (0.0%) 1.3
GDE/MUSCLE/src/ 5 (0.0%) 3 (0.0%) 0.6
SOURCE_TOOLS/refactor/ 4 (0.0%) 2 (0.0%) 0.5
PERL_SCRIPTS/MACROS/ 4 (0.0%) 2 (0.0%) 0.5
GDE/MAFFT/mafft-7.055-with-extensions/ 3 (0.0%) 2 (0.0%) 0.6
lib/motifHack/pixmaps/ 3 (0.0%) 1 (0.0%) 0.3
UNIT_TESTER/run/homefake/.arb_prop/ 1 (0.0%) 1 (0.0%) 1.0
UNIT_TESTER/run/fakehome/ 2 (0.0%) 1 (0.0%) 0.5
UNIT_TESTER/flags/ 2 (0.0%) 1 (0.0%) 0.5
lib/rna3d/images/ 44 (0.1%) 0 (0.0%) 0.0
lib/rna3d/ 2 (0.0%) 0 (0.0%) 0.0
lib/pixmaps/seer/ 3 (0.0%) 0 (0.0%) 0.0
lib/pictures/unused/demo/ 27 (0.1%) 0 (0.0%) 0.0
lib/pictures/seer/ 5 (0.0%) 0 (0.0%) 0.0
lib/pictures/findcorr/ 20 (0.0%) 0 (0.0%) 0.0
lib/pictures/etc/ 1 (0.0%) 0 (0.0%) 0.0
lib/pictures/demo/ 27 (0.1%) 0 (0.0%) 0.0
lib/pictures/PARS/ 1 (0.0%) 0 (0.0%) 0.0
lib/icons/ 2 (0.0%) 0 (0.0%) 0.0
RNA3D/Attic/images/ 22 (0.1%) 0 (0.0%) 0.0
RNA3D/Attic/data/ 5 (0.0%) 0 (0.0%) 0.0
PGT/xslt/ 1 (0.0%) 0 (0.0%) 0.0
PERL_SCRIPTS/ 4 (0.0%) 0 (0.0%) 0.0
NIELS_F77/ 13 (0.0%) 0 (0.0%) 0.0
JAVALIB/ 1 (0.0%) 0 (0.0%) 0.0
GDEHELP/PHYLIP/ 42 (0.1%) 0 (0.0%) 0.0
GDE/TREEPUZZLE/data/ 5 (0.0%) 0 (0.0%) 0.0
GDE/SATIVA/sativa/epac/ 1 (0.0%) 0 (0.0%) 0.0
GDE/PHYML20130708/phyml/bin/ 2 (0.0%) 0 (0.0%) 0.0
GDE/MOLPHY/utl/ 42 (0.1%) 0 (0.0%) 0.0
DUMMYINC/ 1 (0.0%) 0 (0.0%) 0.0
BERGEY/ 1 (0.0%) 0 (0.0%) 0.0

Activity of westram

Most Recent Commits

westram 2024-10-01 18:45 Rev.: 19499


* implements #863
* add new ACI command "dupidx" (active in group search).
* update group-enumeration presets: use '~' instead of '_'. use new ACI command 'dupidx'.

72 lines of code changed in 5 files:

  • HELP_SOURCE/source: group_rename.hlp (new)
  • NTREE: NT_group_search.cxx (+6 -6), NT_tree_cmp.cxx (+5 -5)
  • SL/GROUP_SEARCH: group_search.cxx (+52 -7)
westram 2024-04-09 14:39 Rev.: 19495


* rename {{{aw_file_selection}}} -> {{{aw_modal_file_selection}}} to emphasize that it will break macro-capability.
* use non-modal fileprompter to select reference database for sina.

35 lines of code changed in 5 files:

  • AWT: AWT_config_manager.cxx (+2 -2)
  • EDIT4: graph_aligner_gui.cxx (+27 -15)
  • WINDOW: AW_cb_struct.cxx (+1 -1), AW_modal.cxx (+4 -2), aw_root.hxx (+1 -1)
westram 2024-02-05 12:50 Rev.: 19494


* collection of sysinfo terminated with error
- caused by undefined environment variable
- relevant info (like available memory) was not collected

2 lines of code changed in 1 file:

  • SH: arb_launcher (+2 -2)
westram 2023-12-07 19:22 Rev.: 19493


* homebrew build looked for wrong lib-suffix. patch from jan. thx :)
* fixed a typo in {{{warn_undefined_symbols.pl}}}

4 lines of code changed in 2 files:

  • PERL2ARB: Makefile.main (+3 -1), warn_undefined_symbols.pl (+1 -1)
westram 2023-11-23 12:44 Rev.: 19492


* mention {{{libgomp1}}} (required by FastTreeMP)

2 lines of code changed in 2 files:

  • arb_INSTALL.txt (+1)
  • SH: arb_installubuntu4arb.sh (+1)
westram 2023-11-18 10:15 Rev.: 19491


* after detecting perl/macro-incompatibility, show OS-specific advice.

10 lines of code changed in 1 file:

  • SH: arb_macro_compatibility.sh (+10)
westram 2023-09-13 18:33 Rev.: 19489


* reintegrates 'macros' into 'trunk'
* implements #856
* adds: log:branches/macros@19482:19488

277 lines of code changed in 16 files:

  • HELP_SOURCE/source: macro.hlp (+14 -13), macro_interruption.hlp (new 58)
  • PERL2ARB: ARB.pm (+17)
  • SL/MACROS: Makefile (+3), macro_gui.cxx (+65 -3), macros_local.hxx (+1), recmac.cxx (+21 -3), recmac.hxx (+2), trackers.cxx (+5), trackers.hxx (+2)
  • WETC: Makefile (+1), WETC_main.cxx (+58 -11)
  • WINDOW: aw_window.hxx (+5)
  • lib/pictures: macro_interruption.fig (new 19), macro_select.fig (+6 -5)
westram 2023-08-11 13:40 Rev.: 19480


* reintegrates 'gde' into 'trunk'
* adds: log:branches/gde@19460:19479

2421 lines of code changed in 138 files:

  • GDE: Makefile (+7 -14)
  • GDE/AxML: axml.c (+9 -11), axml.h (+4 -4)
  • GDE/CLUSTAL: amenu.c (+48 -51), clustalv.c (+1 -1), myers.c (+3 -3), sequence.c (+17 -17), showpair.c (+3 -3), trees.c (+8 -11), upgma.c (+1 -1), util.c (+12 -12)
  • GDE/CLUSTALW: amenu.c (+27 -25), calcgapcoeff.c (+4 -4), calctree.c (+42 -36), clustalw.c (+2 -2), clustalw.h (+12 -12), interface.c (+72 -99), malign.c (-1), matrices.h (+2 -2), param.h (+19 -19), readmat.c (+18 -12), sequence.c (+103 -66), trees.c (+2 -4), util.c (+5 -5)
  • GDE/FASTDNAML: fastDNAml.c (+4 -4), fastDNAml.h (+4 -4)
  • GDE/MAFFT: Makefile (+1 -1)
  • GDE/MAFFT/mafft-7.055-with-extensions/core: Makefile (+40 -40), io.c (+74 -68), rna.c (+45 -33)
  • GDE/MAFFT/mafft-7.055-with-extensions/extensions: Makefile (+2 -1)
  • GDE/MAFFT/mafft-7.055-with-extensions/extensions/mxscarna_src: BPPMatrix.hpp (+9 -2)
  • GDE/MrBAYES/mrbayes_3.2.1: Makefile (-1), sumt.c (+2 -2)
  • GDE/PHYLIP: Makefile (+1 -36), clique.c (+44 -44), cons.c (+28 -26), cons.h (+1 -1), consense.c (+5 -5), contml.c (+10 -10), contrast.c (+12 -8), disc.c (+17 -17), discrete.c (+79 -81), dnacomp.c (+55 -50), dnaml.c (+48 -44), dnamlk.c (+53 -48), dnamove.c (+36 -31), dnapars.c (+29 -24), dnapenny.c (+1 -1), dollop.c (+36 -31), dolmove.c (+22 -17), dolpenny.c (+4 -4), draw.c (+105 -113), draw.h (+2 -3), draw2.c (+41 -52), drawgram.c (+35 -34), drawtree.c (+23 -27), factor.c (+24 -24), fitch.c (+17 -18), hermite.c (del), interface.c (del), interface.h (del), io.h (del), kitsch.c (+1 -1), macface.c (del), macface.h (del), mix.c (+23 -23), move.c (+31 -27), moves.c (+30 -30), neighbor.c (+5 -5), pars.c (+33 -25), penny.c (+2 -2), phylip.c (+43 -39), phylip.h (+2 -2), proml.c (+61 -56), promlk.c (+74 -73), protdist.c (+54 -54), protpars.c (+37 -37), restdist.c (+3 -8), restml.c (+20 -20), retree.c (+59 -60), seq.c (+80 -80), seqboot.c (+3 -1)
  • GDE/PHYML: eigen.c (+1 -2), free.c (-35), free.h (-3), lk.c (+1 -4), lk.h (+1 -1), main.c (+3 -5), models.c (+8 -16), models.h (-1), optimiz.c (+7 -106), optimiz.h (-2), options.c (+24 -12), simu.c (+19 -27), simu.h (+2 -2), utilities.c (+16 -39), utilities.h (+4 -5)
  • GDE/PHYML20130708/phyml/src: models.c (+7 -2), simu.c (+1 -1), spr.c (+1 -1)
  • GDE/PROBCONS: Makefile (+2 -2)
  • GDE/PROBCONS/probcons: Main.cc (+4 -4), Makefile (+2 -2), ProbabilisticModel.h (+2 -2)
  • GDE/RAxML: axml.c (+84 -90), axml.h (+2 -2), bipartitionList.c (+2), classify.c (+5 -6), evaluateGenericSpecial.c (+21 -3), evaluatePartialGenericSpecial.c (+1), fastDNAparsimony.c (+15 -19), globalVariables.h (+3 -3), leaveDropping.c (+15 -14), models.c (+12 -15), multiple.c (+7 -8), newviewGenericSpecial.c (+17 -3), searchAlgo.c (+2 -2), treeIO.c (+10 -14)
  • GDE/RAxML8: Makefile (+6 -5)
  • GDE/SUPPORT: Flatio.c (+15 -44), Restriction.c (+9 -22), Zuk_to_gen.c (+7 -8), count.c (+18 -21), findall.c (+14 -14), lsadt.c (+45 -78), sho_helix.c (+4 -5), varpos.c (+5 -5)
  • GDE/TREEPUZZLE/src: ml.h (+1 -1), ml1.c (+9 -9), ml2.c (+13 -13), model1.c (+1 -1), ppuzzle.c (+7 -7), ppuzzle.h (+4 -4), puzzle.h (+3 -4), puzzle1.c (+27 -64), puzzle2.c (+38 -42), sched.c (+3 -3)
westram 2023-08-05 14:43 Rev.: 19459


* activate warnings (reverts parts of r15483).

3 lines of code changed in 1 file:

  • GDE/PHYML20130708/phyml: configure.fallback (+3 -3)
westram 2023-08-05 14:41 Rev.: 19458


* do NOT suppress warnings in MrBAYES => {{{-Werror-implicit-function-declaration}}} now active. No error reported.

1 lines of code changed in 1 file:

  • GDE/MrBAYES/mrbayes_3.2.1: Makefile (+1 -1)
westram 2023-08-05 14:38 Rev.: 19457


* pass down {{{onlyC_flags}}}.
* use onlyC_flags in all Makefiles (inject using seq).
* patch SATIVA raxml code in tarball (one missing prototype).

7 lines of code changed in 2 files:

  • GDE/SATIVA: Makefile (+7 -6), sativa-RAxML-8.2.3-patched.tar.gz (changed)
westram 2023-08-05 14:34 Rev.: 19456


* fix builds of AxML, FASTDNAML + SUPPORT
- mostly fixed by add missing includes.
- had to change code order to avoid otherwise required definition of protytypes in SUPPORT.

455 lines of code changed in 10 files:

  • GDE/AxML: axml.c (+6 -3)
  • GDE/FASTDNAML: fastDNAml.c (+2), fastDNAml.h (+3 -6)
  • GDE/SUPPORT: Flatio.c (+3), Restriction.c (+109 -109), Zuk_to_gen.c (+39 -36), count.c (+200 -197), findall.c (+25 -25), lsadt.c (+35 -30), sho_helix.c (+33 -33)
westram 2023-08-05 14:22 Rev.: 19455


* keep {{{-W -Wall}}} everywhere in GDE => activates -Werror-implicit-function-declaration.
- Note: (re)build of GDE tools fails.

1 lines of code changed in 1 file:

  • GDE: Makefile (+1 -1)
westram 2023-08-05 14:19 Rev.: 19454


* hide message from autoreconf (misinterpreted by emacs).

4 lines of code changed in 1 file:

  • GDE/SINA: Makefile (+4 -2)
westram 2023-08-05 14:17 Rev.: 19453


* use {{{-W -Wall}}} in FASTTREE + fix warnings.

15 lines of code changed in 2 files:

  • GDE/FASTTREE: FastTree.c (+13 -8), Makefile (+2 -2)
westram 2023-08-05 14:15 Rev.: 19452


* get rid of {{{tmpnam()}}}.

18 lines of code changed in 2 files:

  • READSEQ: readseq.c (+17 -9), ureadseq.h (+1)
westram 2023-08-05 14:13 Rev.: 19451


* fix a bug (and silence {{{-Wparentheses}}}).
* fix other warnings

22 lines of code changed in 2 files:

  • READSEQ: readseq.c (+21 -20), ureadseq.c (+1 -3)
westram 2023-08-05 13:53 Rev.: 19450


* keep {{{-W -Wall}}} in READSEQ => build does fail due to implicit-function-declaration.
* include {{{stdlib.h}}} for missing prototypes => fixes build error.

2 lines of code changed in 2 files:

  • READSEQ: Makefile (+1 -1), readseq.c (+1)
westram 2023-08-05 13:50 Rev.: 19449


* shadow-location does appear as warning AND note (depending on gcc version)
- handle both.

67 lines of code changed in 1 file:

  • SOURCE_TOOLS: postcompile.pl (+67 -63)
westram 2023-08-05 13:48 Rev.: 19448


* enable + fix warnings in ISLAND_HOPPING.

8 lines of code changed in 2 files:

  • ISLAND_HOPPING: Makefile (-3), island_hopping.cxx (+8 -6)

(8963 more)

Generated by StatSVN 0.7.0