/trunk Developers: westram

Login name:
westram
Total Commits:
43,675 (87.3%)
Lines of Code:
1,206,716 (48.1%)
Most Recent Commit:
2023-09-13 18:33
Tweet this:
Tweet this

Activity by Clock Time

Activity by Hour of Day for westram

Activity by Day of Week for westram

Activity in Directories

Directory Changes Lines of Code Lines per Change
Totals 43675 (100.0%) 1206716 (100.0%) 27.6
ARBDB/ 3997 (9.2%) 120743 (10.0%) 30.2
lib/nas/ 30 (0.1%) 66561 (5.5%) 2218.7
GDE/PHYLIP/ 196 (0.4%) 57426 (4.8%) 292.9
WINDOW/ 2659 (6.1%) 55937 (4.6%) 21.0
AWT/ 2229 (5.1%) 49064 (4.1%) 22.0
NTREE/ 2548 (5.8%) 48546 (4.0%) 19.0
UNIT_TESTER/run/display/ 204 (0.5%) 46531 (3.9%) 228.0
EDIT4/ 2474 (5.7%) 45196 (3.7%) 18.2
UNIT_TESTER/run/ 133 (0.3%) 30642 (2.5%) 230.3
HELP_SOURCE/oldhelp/ 2246 (5.1%) 30060 (2.5%) 13.3
CONVERTALN/ 463 (1.1%) 29090 (2.4%) 62.8
TOOLS/ 735 (1.7%) 23559 (2.0%) 32.0
GDE/PHYLIP/doc/ 42 (0.1%) 21478 (1.8%) 511.3
GENOM_IMPORT/ 389 (0.9%) 19995 (1.7%) 51.4
PARSIMONY/ 752 (1.7%) 19035 (1.6%) 25.3
PROBE/ 706 (1.6%) 18996 (1.6%) 26.9
DIST/ 757 (1.7%) 17561 (1.5%) 23.1
SOURCE_TOOLS/ 824 (1.9%) 16036 (1.3%) 19.4
/ 1091 (2.5%) 15440 (1.3%) 14.1
GDE/PHYML/ 48 (0.1%) 15276 (1.3%) 318.2
GENOM/ 887 (2.0%) 14229 (1.2%) 16.0
MERGE/ 735 (1.7%) 14078 (1.2%) 19.1
SECEDIT/ 603 (1.4%) 13634 (1.1%) 22.6
GDE/PHYML20130708/phyml/ 10 (0.0%) 13413 (1.1%) 1341.3
SL/FAST_ALIGNER/ 318 (0.7%) 12517 (1.0%) 39.3
lib/ 60 (0.1%) 12302 (1.0%) 205.0
ARB_GDE/ 594 (1.4%) 11758 (1.0%) 19.7
CORE/ 574 (1.3%) 11124 (0.9%) 19.3
PROBE_DESIGN/ 502 (1.1%) 11035 (0.9%) 21.9
SL/TREEDISP/ 515 (1.2%) 10473 (0.9%) 20.3
TEMPLATES/ 332 (0.8%) 9631 (0.8%) 29.0
MULTI_PROBE/ 560 (1.3%) 9440 (0.8%) 16.8
UNIT_TESTER/ 538 (1.2%) 9258 (0.8%) 17.2
NALIGNER/ 360 (0.8%) 9255 (0.8%) 25.7
ptpan/ 128 (0.3%) 8692 (0.7%) 67.9
lib/pictures/ 417 (1.0%) 8661 (0.7%) 20.7
PROBE_WEB/CLIENT/ 267 (0.6%) 8512 (0.7%) 31.8
AWTI/ 381 (0.9%) 8000 (0.7%) 20.9
GDE/FASTDNAML/ 42 (0.1%) 7406 (0.6%) 176.3
EISPACK/ 20 (0.0%) 7294 (0.6%) 364.7
AWTC/ 359 (0.8%) 7025 (0.6%) 19.5
PRIMER_DESIGN/ 291 (0.7%) 6913 (0.6%) 23.7
AISC/ 208 (0.5%) 6893 (0.6%) 33.1
GDE/RAxML/ 76 (0.2%) 6847 (0.6%) 90.0
GDE/AxML/ 21 (0.0%) 6023 (0.5%) 286.8
CONSENSUS_TREE/ 328 (0.8%) 5967 (0.5%) 18.1
lib/import/ 211 (0.5%) 5908 (0.5%) 28.0
HELP_SOURCE/ 234 (0.5%) 5720 (0.5%) 24.4
PHYLO/ 406 (0.9%) 4803 (0.4%) 11.8
ALIV3/ 174 (0.4%) 4669 (0.4%) 26.8
UNIT_TESTER/run/impexp/ 51 (0.1%) 4435 (0.4%) 86.9
PROBE_SERVER/PROBE_GROUP/ 91 (0.2%) 4351 (0.4%) 47.8
PROBE_SET/ 312 (0.7%) 4330 (0.4%) 13.8
AISC_COM/C/ 283 (0.6%) 4069 (0.3%) 14.3
STAT/ 280 (0.6%) 3887 (0.3%) 13.8
ISLAND_HOPPING/ 139 (0.3%) 3828 (0.3%) 27.5
GDE/CLUSTALW/ 62 (0.1%) 3728 (0.3%) 60.1
lib/pixmaps/ 302 (0.7%) 3582 (0.3%) 11.8
AISC_MKPTPS/ 111 (0.3%) 3574 (0.3%) 32.1
AISC_COM/AISC/ 112 (0.3%) 3501 (0.3%) 31.2
RNA3D/ 308 (0.7%) 3486 (0.3%) 11.3
SH/ 187 (0.4%) 3364 (0.3%) 17.9
GDEHELP/MENUS/ 260 (0.6%) 3303 (0.3%) 12.7
SL/DB_QUERY/ 177 (0.4%) 3004 (0.2%) 16.9
ARBDBPP/ 72 (0.2%) 2998 (0.2%) 41.6
lib/addlibs/ 13 (0.0%) 2859 (0.2%) 219.9
SEQ_QUALITY/ 258 (0.6%) 2850 (0.2%) 11.0
EDIT/ 91 (0.2%) 2810 (0.2%) 30.8
util/ 232 (0.5%) 2549 (0.2%) 10.9
GDE/MOLPHY/ 105 (0.2%) 2531 (0.2%) 24.1
PGT/ 178 (0.4%) 2495 (0.2%) 14.0
PERL2ARB/ 164 (0.4%) 2408 (0.2%) 14.6
lib/import/nonformats/ 19 (0.0%) 2340 (0.2%) 123.1
UNIT_TESTER/run/consense/3/ 11 (0.0%) 2336 (0.2%) 212.3
lib/pictures/edit4/ 47 (0.1%) 2324 (0.2%) 49.4
SL/AP_TREE/ 153 (0.4%) 2298 (0.2%) 15.0
RNACMA/ 84 (0.2%) 2285 (0.2%) 27.2
ALEIO/ 53 (0.1%) 2265 (0.2%) 42.7
PROBE_SERVER/PROBE_GROUP_DESIGN/ 46 (0.1%) 2253 (0.2%) 48.9
SL/DB_SCANNER/ 137 (0.3%) 2252 (0.2%) 16.4
SL/PRONUC/ 129 (0.3%) 2226 (0.2%) 17.2
GL/glAW/ 74 (0.2%) 2110 (0.2%) 28.5
SL/ALILINK/ 40 (0.1%) 2099 (0.2%) 52.4
NAMES/ 123 (0.3%) 2068 (0.2%) 16.8
READSEQ/ 45 (0.1%) 2059 (0.2%) 45.7
SL/TREE_READ/ 97 (0.2%) 2004 (0.2%) 20.6
SL/AW_NAME/ 180 (0.4%) 1994 (0.2%) 11.0
lib/pixmaps/unused/ 147 (0.3%) 1993 (0.2%) 13.5
PROBE_SERVER/ 85 (0.2%) 1809 (0.1%) 21.2
SL/HELIX/ 113 (0.3%) 1786 (0.1%) 15.8
lib/pictures/consensus/ 13 (0.0%) 1667 (0.1%) 128.2
SL/SEQIO/ 81 (0.2%) 1640 (0.1%) 20.2
ORS_CGI/ 55 (0.1%) 1633 (0.1%) 29.6
SL/ITEMS/ 126 (0.3%) 1617 (0.1%) 12.8
SL/DB_UI/ 130 (0.3%) 1598 (0.1%) 12.2
GL/glpng/ 38 (0.1%) 1554 (0.1%) 40.8
SERVERCNTRL/ 132 (0.3%) 1522 (0.1%) 11.5
UNIT_TESTER/run/consense/2/ 13 (0.0%) 1468 (0.1%) 112.9
SL/GUI_ALIVIEW/ 175 (0.4%) 1449 (0.1%) 8.2
PROBE_SERVER/WORKER/ 33 (0.1%) 1432 (0.1%) 43.3
SL/NDS/ 92 (0.2%) 1364 (0.1%) 14.8
lib/pictures/awt/ 75 (0.2%) 1360 (0.1%) 18.1
TEST/ 40 (0.1%) 1327 (0.1%) 33.1
ARBDB2/ 29 (0.1%) 1309 (0.1%) 45.1
SL/CB/ 47 (0.1%) 1289 (0.1%) 27.4
TRS/ 37 (0.1%) 1279 (0.1%) 34.5
GDEHELP/ 147 (0.3%) 1240 (0.1%) 8.4
lib/pictures/merge/ 48 (0.1%) 1214 (0.1%) 25.2
lib/pixmaps/pgt/ 43 (0.1%) 1199 (0.1%) 27.8
ARBDB_COMPRESS/ 30 (0.1%) 1197 (0.1%) 39.9
GDE/CORE/ 94 (0.2%) 1193 (0.1%) 12.6
PERL_SCRIPTS/SPECIES/ 30 (0.1%) 1149 (0.1%) 38.3
SEER/ 41 (0.1%) 1115 (0.1%) 27.1
SL/TREE_WRITE/ 95 (0.2%) 1083 (0.1%) 11.4
XML/ 72 (0.2%) 1069 (0.1%) 14.8
GDE/SUPPORT/ 44 (0.1%) 1063 (0.1%) 24.1
SL/SEQUENCE/ 141 (0.3%) 1003 (0.1%) 7.1
PROBE_COM/ 99 (0.2%) 913 (0.1%) 9.2
TREE_COMPRESS/ 9 (0.0%) 909 (0.1%) 101.0
SL/AW_HELIX/ 86 (0.2%) 904 (0.1%) 10.5
ARBDBS/ 29 (0.1%) 850 (0.1%) 29.3
UNIT_TESTER/run/consense/1/ 17 (0.0%) 813 (0.1%) 47.8
PERL_SCRIPTS/ARBTOOLS/ 18 (0.0%) 801 (0.1%) 44.5
SL/GROUP_SEARCH/ 27 (0.1%) 794 (0.1%) 29.4
GDE/MOLPHY/doc/ 4 (0.0%) 758 (0.1%) 189.5
SL/LOCATION/ 29 (0.1%) 754 (0.1%) 26.0
TREEGEN/ 127 (0.3%) 707 (0.1%) 5.5
DBSERVER/ 71 (0.2%) 701 (0.1%) 9.8
SL/FILTER/ 70 (0.2%) 696 (0.1%) 9.9
lib/macros/.checks/ 3 (0.0%) 675 (0.1%) 225.0
lib/pixmaps/icons/unused/ 32 (0.1%) 662 (0.1%) 20.6
lib/pixmaps/edit/ 72 (0.2%) 632 (0.1%) 8.7
UNIT_TESTER/run/help/ 11 (0.0%) 600 (0.0%) 54.5
UNIT_TESTER/run/pars/ 52 (0.1%) 597 (0.0%) 11.4
HELP_SOURCE/source/ 54 (0.1%) 597 (0.0%) 11.0
lib/macros/ 32 (0.1%) 586 (0.0%) 18.3
ORS_SERVER/ 33 (0.1%) 580 (0.0%) 17.5
GDEHELP/HELP_WRITTEN/ 27 (0.1%) 579 (0.0%) 21.4
PROBE_SERVER/TREE_MERGE/ 14 (0.0%) 572 (0.0%) 40.8
SOURCE_TOOLS/release/ 18 (0.0%) 557 (0.0%) 30.9
PERL_SCRIPTS/MAUS/ 11 (0.0%) 549 (0.0%) 49.9
GDE/MUSCLE/src/unused/ 3 (0.0%) 548 (0.0%) 182.6
PROBE_WEB/SERVER/ 43 (0.1%) 523 (0.0%) 12.1
UNIT_TESTER/run/xsub/ 5 (0.0%) 511 (0.0%) 102.2
SL/MACROS/ 81 (0.2%) 508 (0.0%) 6.2
UNIT_TESTER/run/tools/ 44 (0.1%) 499 (0.0%) 11.3
GDE/RAxML8/ 16 (0.0%) 497 (0.0%) 31.0
SL/FILE_BUFFER/ 43 (0.1%) 495 (0.0%) 11.5
PERL_SCRIPTS/GENOME/ 16 (0.0%) 479 (0.0%) 29.9
SL/REGEXPR/ 52 (0.1%) 478 (0.0%) 9.1
lib/pixmaps/edit/unused/ 48 (0.1%) 469 (0.0%) 9.7
lib/pictures/unused/ 11 (0.0%) 462 (0.0%) 42.0
NAMES_COM/ 72 (0.2%) 460 (0.0%) 6.3
lib/submit/ 2 (0.0%) 446 (0.0%) 223.0
lib/inputMasks/ 25 (0.1%) 436 (0.0%) 17.4
GDE/HGL_SRC/ 27 (0.1%) 418 (0.0%) 15.4
SL/TREE_ADMIN/ 37 (0.1%) 406 (0.0%) 10.9
SL/ARB_TREE/ 86 (0.2%) 401 (0.0%) 4.6
SL/NEIGHBOURJOIN/ 68 (0.2%) 392 (0.0%) 5.7
GDEHELP/HELP_PLAIN/ 12 (0.0%) 372 (0.0%) 31.0
SL/MATRIX/ 59 (0.1%) 370 (0.0%) 6.2
lib/pictures/faligner/ 16 (0.0%) 369 (0.0%) 23.0
lib/pictures/query/ 18 (0.0%) 368 (0.0%) 20.4
bin/ 32 (0.1%) 361 (0.0%) 11.2
SL/ROOTED_TREE/ 17 (0.0%) 350 (0.0%) 20.5
lib/pictures/pars/ 7 (0.0%) 335 (0.0%) 47.8
SL/PTCLEAN/ 41 (0.1%) 330 (0.0%) 8.0
GDE/FASTTREE/ 13 (0.0%) 328 (0.0%) 25.2
lib/pictures/awtc/ 19 (0.0%) 327 (0.0%) 17.2
TESTAWT/ 17 (0.0%) 317 (0.0%) 18.6
lib/pixmaps/icons/ 17 (0.0%) 310 (0.0%) 18.2
GDE/CLUSTAL/ 37 (0.1%) 309 (0.0%) 8.3
TESTVECTORFONT/ 15 (0.0%) 307 (0.0%) 20.4
CAT/ 20 (0.0%) 300 (0.0%) 15.0
lib/pixmaps/merge/ 7 (0.0%) 295 (0.0%) 42.1
GDE/ 50 (0.1%) 287 (0.0%) 5.7
lib/pixmaps/print/ 20 (0.0%) 281 (0.0%) 14.0
HELP_SOURCE/genhelp/ 24 (0.1%) 272 (0.0%) 11.3
BUGEX/ 12 (0.0%) 251 (0.0%) 20.9
PERL_SCRIPTS/test/ 18 (0.0%) 239 (0.0%) 13.2
PERL_SCRIPTS/ARBTOOLS/IFTHELP/ 16 (0.0%) 237 (0.0%) 14.8
SL/ 42 (0.1%) 227 (0.0%) 5.4
SL/CONSENSUS/ 17 (0.0%) 225 (0.0%) 13.2
WETC/ 59 (0.1%) 224 (0.0%) 3.7
GDE/MAFFT/mafft-7.055-with-extensions/core/ 7 (0.0%) 224 (0.0%) 32.0
GDE/TREEPUZZLE/src/ 24 (0.1%) 219 (0.0%) 9.1
HEADERLIBS/ 12 (0.0%) 213 (0.0%) 17.7
SL/INSDEL/ 44 (0.1%) 212 (0.0%) 4.8
SL/REFENTRIES/ 46 (0.1%) 208 (0.0%) 4.5
GDE/MrBAYES/mrbayes_3.2.1/ 14 (0.0%) 207 (0.0%) 14.7
PERLTOOLS/ 49 (0.1%) 191 (0.0%) 3.8
BINDEP/ 45 (0.1%) 187 (0.0%) 4.1
AISC_COM/ 10 (0.0%) 183 (0.0%) 18.3
UNIT_TESTER/valgrind/ 5 (0.0%) 182 (0.0%) 36.4
SL/TRANSLATE/ 44 (0.1%) 182 (0.0%) 4.1
SL/ITEM_SHADER/ 43 (0.1%) 180 (0.0%) 4.1
PERL_SCRIPTS/SAI/ 5 (0.0%) 163 (0.0%) 32.6
CHIP/ 29 (0.1%) 160 (0.0%) 5.5
SOURCE_TOOLS/COMPILE_COMPAT/ 16 (0.0%) 157 (0.0%) 9.8
GDE/TREEPUZZLE/ 29 (0.1%) 155 (0.0%) 5.3
GDE/LOOPTOOL/ 26 (0.1%) 152 (0.0%) 5.8
lib/export/ 43 (0.1%) 145 (0.0%) 3.3
lib/pictures/cpro/ 6 (0.0%) 143 (0.0%) 23.8
SL/XFERGUI/ 9 (0.0%) 143 (0.0%) 15.8
lib/sellists/ 29 (0.1%) 142 (0.0%) 4.8
lib/pixmaps/print/unused/ 8 (0.0%) 138 (0.0%) 17.2
UNIT_TESTER/run/general/ 13 (0.0%) 136 (0.0%) 10.4
lib/macros/ARB/SEQ_DATA/ 4 (0.0%) 127 (0.0%) 31.7
PERL_SCRIPTS/BIOPERL/ 3 (0.0%) 123 (0.0%) 41.0
lib/pictures/phylo/ 9 (0.0%) 118 (0.0%) 13.1
GL/ 16 (0.0%) 114 (0.0%) 7.1
lib/dtd/ 8 (0.0%) 111 (0.0%) 13.8
AWDEMO/ 18 (0.0%) 107 (0.0%) 5.9
PERL_SCRIPTS/GENERAL/ 1 (0.0%) 99 (0.0%) 99.0
SL/FILTSEQEXP/ 18 (0.0%) 97 (0.0%) 5.3
ARBDB/EXAMPLES/ 19 (0.0%) 89 (0.0%) 4.6
PERL_SCRIPTS/lib/ 3 (0.0%) 81 (0.0%) 27.0
SOURCE_TOOLS/docs/ 1 (0.0%) 79 (0.0%) 79.0
PERL_SCRIPTS/ARBTOOLS/TESTS/ 2 (0.0%) 78 (0.0%) 39.0
SL/QUERY/ 16 (0.0%) 76 (0.0%) 4.7
GDE/PHYML20130708/ 12 (0.0%) 75 (0.0%) 6.2
lib/BUGS/ 5 (0.0%) 71 (0.0%) 14.2
ORS_COM/ 23 (0.1%) 66 (0.0%) 2.8
UNIT_TESTER/run/consense/4/ 6 (0.0%) 61 (0.0%) 10.1
SL/ALIVIEW/ 33 (0.1%) 58 (0.0%) 1.7
lib/motifHack/ 8 (0.0%) 56 (0.0%) 7.0
XML_IMPORT/IMP_TREE/ 36 (0.1%) 53 (0.0%) 1.4
XML_IMPORT/ 12 (0.0%) 47 (0.0%) 3.9
PROBE_WEB/ 4 (0.0%) 46 (0.0%) 11.5
lib/pictures/window/ 3 (0.0%) 45 (0.0%) 15.0
GDE/MAFFT/ 7 (0.0%) 44 (0.0%) 6.2
UNIT_TESTER/run/pvp/ 8 (0.0%) 41 (0.0%) 5.1
lib/arb_default/ 19 (0.0%) 40 (0.0%) 2.1
SL/XFERSET/ 12 (0.0%) 39 (0.0%) 3.2
etc/ 11 (0.0%) 38 (0.0%) 3.4
UNIT_TESTER/run/distance/ 11 (0.0%) 38 (0.0%) 3.4
GDE/MrBAYES/ 6 (0.0%) 38 (0.0%) 6.3
GDE/MUSCLE/ 6 (0.0%) 37 (0.0%) 6.1
BINDINGS/PERL/ 1 (0.0%) 37 (0.0%) 37.0
PERL_SCRIPTS/ARBTOOLS/DOCUMENTED/ 3 (0.0%) 33 (0.0%) 11.0
GDE/MAFFT/mafft-7.053-without-extensions/ 1 (0.0%) 33 (0.0%) 33.0
lib/gde/ 5 (0.0%) 32 (0.0%) 6.4
SL/PVP/ 11 (0.0%) 32 (0.0%) 2.9
RNA3D/Attic/OPENGL/ 14 (0.0%) 32 (0.0%) 2.2
HELP_SOURCE/oldhelp/prompt/ 3 (0.0%) 32 (0.0%) 10.6
PERL_SCRIPTS/ACI/ 1 (0.0%) 30 (0.0%) 30.0
HELP_SOURCE/oldhelp/seer/ 15 (0.0%) 30 (0.0%) 2.0
UNIT_TESTER/run/trees/ 1 (0.0%) 27 (0.0%) 27.0
GDE/SATIVA/ 14 (0.0%) 27 (0.0%) 1.9
UNIT_TESTER/run/consense/6/ 2 (0.0%) 26 (0.0%) 13.0
SL/SAICALC/ 14 (0.0%) 25 (0.0%) 1.7
GDE/PROBCONS/ 5 (0.0%) 20 (0.0%) 4.0
PERL_SCRIPTS/IFTHELP/ 10 (0.0%) 18 (0.0%) 1.8
GDE/PROBCONS/probcons/ 7 (0.0%) 18 (0.0%) 2.5
GDE/PHYML20130708/phyml/src/ 5 (0.0%) 13 (0.0%) 2.6
GDE/MAFFT/mafft-7.055-with-extensions/extensions/mxscarna_src/ 3 (0.0%) 13 (0.0%) 4.3
doc/ 2 (0.0%) 11 (0.0%) 5.5
GDE/TREEPUZZLE/doc/ 5 (0.0%) 9 (0.0%) 1.8
GDEHELP/DATA_FILES/ 2 (0.0%) 8 (0.0%) 4.0
GDE/SINA/builddir/src/ 3 (0.0%) 8 (0.0%) 2.6
BINDINGS/ 6 (0.0%) 8 (0.0%) 1.3
UNIT_TESTER/sockets/ 3 (0.0%) 7 (0.0%) 2.3
GDE/SINA/ 4 (0.0%) 6 (0.0%) 1.5
lib/pictures/unused/findcorr/ 27 (0.1%) 5 (0.0%) 0.1
fig2dev/dev/ 62 (0.1%) 4 (0.0%) 0.0
fig2dev/ 68 (0.2%) 4 (0.0%) 0.0
UNIT_TESTER/run/diff/ 8 (0.0%) 4 (0.0%) 0.5
GDE/MAFFT/mafft-7.055-with-extensions/extensions/ 3 (0.0%) 4 (0.0%) 1.3
GDE/MUSCLE/src/ 5 (0.0%) 3 (0.0%) 0.6
SOURCE_TOOLS/refactor/ 4 (0.0%) 2 (0.0%) 0.5
PERL_SCRIPTS/MACROS/ 4 (0.0%) 2 (0.0%) 0.5
GDE/MAFFT/mafft-7.055-with-extensions/ 3 (0.0%) 2 (0.0%) 0.6
lib/motifHack/pixmaps/ 3 (0.0%) 1 (0.0%) 0.3
UNIT_TESTER/run/homefake/.arb_prop/ 1 (0.0%) 1 (0.0%) 1.0
UNIT_TESTER/run/fakehome/ 2 (0.0%) 1 (0.0%) 0.5
UNIT_TESTER/flags/ 2 (0.0%) 1 (0.0%) 0.5
lib/rna3d/images/ 44 (0.1%) 0 (0.0%) 0.0
lib/rna3d/ 2 (0.0%) 0 (0.0%) 0.0
lib/pixmaps/seer/ 3 (0.0%) 0 (0.0%) 0.0
lib/pictures/unused/demo/ 27 (0.1%) 0 (0.0%) 0.0
lib/pictures/seer/ 5 (0.0%) 0 (0.0%) 0.0
lib/pictures/findcorr/ 20 (0.0%) 0 (0.0%) 0.0
lib/pictures/etc/ 1 (0.0%) 0 (0.0%) 0.0
lib/pictures/demo/ 27 (0.1%) 0 (0.0%) 0.0
lib/pictures/PARS/ 1 (0.0%) 0 (0.0%) 0.0
lib/icons/ 2 (0.0%) 0 (0.0%) 0.0
RNA3D/Attic/images/ 22 (0.1%) 0 (0.0%) 0.0
RNA3D/Attic/data/ 5 (0.0%) 0 (0.0%) 0.0
PGT/xslt/ 1 (0.0%) 0 (0.0%) 0.0
PERL_SCRIPTS/ 4 (0.0%) 0 (0.0%) 0.0
NIELS_F77/ 13 (0.0%) 0 (0.0%) 0.0
JAVALIB/ 1 (0.0%) 0 (0.0%) 0.0
GDEHELP/PHYLIP/ 42 (0.1%) 0 (0.0%) 0.0
GDE/TREEPUZZLE/data/ 5 (0.0%) 0 (0.0%) 0.0
GDE/SATIVA/sativa/epac/ 1 (0.0%) 0 (0.0%) 0.0
GDE/PHYML20130708/phyml/bin/ 2 (0.0%) 0 (0.0%) 0.0
GDE/MOLPHY/utl/ 42 (0.1%) 0 (0.0%) 0.0
DUMMYINC/ 1 (0.0%) 0 (0.0%) 0.0
BERGEY/ 1 (0.0%) 0 (0.0%) 0.0

Activity of westram

Most Recent Commits

westram 2023-09-13 18:33 Rev.: 19489


* reintegrates 'macros' into 'trunk'
* implements #856
* adds: log:branches/macros@19482:19488

277 lines of code changed in 16 files:

  • HELP_SOURCE/source: macro.hlp (+14 -13), macro_interruption.hlp (new 58)
  • PERL2ARB: ARB.pm (+17)
  • SL/MACROS: Makefile (+3), macro_gui.cxx (+65 -3), macros_local.hxx (+1), recmac.cxx (+21 -3), recmac.hxx (+2), trackers.cxx (+5), trackers.hxx (+2)
  • WETC: Makefile (+1), WETC_main.cxx (+58 -11)
  • WINDOW: aw_window.hxx (+5)
  • lib/pictures: macro_interruption.fig (new 19), macro_select.fig (+6 -5)
westram 2023-08-11 13:40 Rev.: 19480


* reintegrates 'gde' into 'trunk'
* adds: log:branches/gde@19460:19479

2421 lines of code changed in 138 files:

  • GDE: Makefile (+7 -14)
  • GDE/AxML: axml.c (+9 -11), axml.h (+4 -4)
  • GDE/CLUSTAL: amenu.c (+48 -51), clustalv.c (+1 -1), myers.c (+3 -3), sequence.c (+17 -17), showpair.c (+3 -3), trees.c (+8 -11), upgma.c (+1 -1), util.c (+12 -12)
  • GDE/CLUSTALW: amenu.c (+27 -25), calcgapcoeff.c (+4 -4), calctree.c (+42 -36), clustalw.c (+2 -2), clustalw.h (+12 -12), interface.c (+72 -99), malign.c (-1), matrices.h (+2 -2), param.h (+19 -19), readmat.c (+18 -12), sequence.c (+103 -66), trees.c (+2 -4), util.c (+5 -5)
  • GDE/FASTDNAML: fastDNAml.c (+4 -4), fastDNAml.h (+4 -4)
  • GDE/MAFFT: Makefile (+1 -1)
  • GDE/MAFFT/mafft-7.055-with-extensions/core: Makefile (+40 -40), io.c (+74 -68), rna.c (+45 -33)
  • GDE/MAFFT/mafft-7.055-with-extensions/extensions: Makefile (+2 -1)
  • GDE/MAFFT/mafft-7.055-with-extensions/extensions/mxscarna_src: BPPMatrix.hpp (+9 -2)
  • GDE/MrBAYES/mrbayes_3.2.1: Makefile (-1), sumt.c (+2 -2)
  • GDE/PHYLIP: Makefile (+1 -36), clique.c (+44 -44), cons.c (+28 -26), cons.h (+1 -1), consense.c (+5 -5), contml.c (+10 -10), contrast.c (+12 -8), disc.c (+17 -17), discrete.c (+79 -81), dnacomp.c (+55 -50), dnaml.c (+48 -44), dnamlk.c (+53 -48), dnamove.c (+36 -31), dnapars.c (+29 -24), dnapenny.c (+1 -1), dollop.c (+36 -31), dolmove.c (+22 -17), dolpenny.c (+4 -4), draw.c (+105 -113), draw.h (+2 -3), draw2.c (+41 -52), drawgram.c (+35 -34), drawtree.c (+23 -27), factor.c (+24 -24), fitch.c (+17 -18), hermite.c (del), interface.c (del), interface.h (del), io.h (del), kitsch.c (+1 -1), macface.c (del), macface.h (del), mix.c (+23 -23), move.c (+31 -27), moves.c (+30 -30), neighbor.c (+5 -5), pars.c (+33 -25), penny.c (+2 -2), phylip.c (+43 -39), phylip.h (+2 -2), proml.c (+61 -56), promlk.c (+74 -73), protdist.c (+54 -54), protpars.c (+37 -37), restdist.c (+3 -8), restml.c (+20 -20), retree.c (+59 -60), seq.c (+80 -80), seqboot.c (+3 -1)
  • GDE/PHYML: eigen.c (+1 -2), free.c (-35), free.h (-3), lk.c (+1 -4), lk.h (+1 -1), main.c (+3 -5), models.c (+8 -16), models.h (-1), optimiz.c (+7 -106), optimiz.h (-2), options.c (+24 -12), simu.c (+19 -27), simu.h (+2 -2), utilities.c (+16 -39), utilities.h (+4 -5)
  • GDE/PHYML20130708/phyml/src: models.c (+7 -2), simu.c (+1 -1), spr.c (+1 -1)
  • GDE/PROBCONS: Makefile (+2 -2)
  • GDE/PROBCONS/probcons: Main.cc (+4 -4), Makefile (+2 -2), ProbabilisticModel.h (+2 -2)
  • GDE/RAxML: axml.c (+84 -90), axml.h (+2 -2), bipartitionList.c (+2), classify.c (+5 -6), evaluateGenericSpecial.c (+21 -3), evaluatePartialGenericSpecial.c (+1), fastDNAparsimony.c (+15 -19), globalVariables.h (+3 -3), leaveDropping.c (+15 -14), models.c (+12 -15), multiple.c (+7 -8), newviewGenericSpecial.c (+17 -3), searchAlgo.c (+2 -2), treeIO.c (+10 -14)
  • GDE/RAxML8: Makefile (+6 -5)
  • GDE/SUPPORT: Flatio.c (+15 -44), Restriction.c (+9 -22), Zuk_to_gen.c (+7 -8), count.c (+18 -21), findall.c (+14 -14), lsadt.c (+45 -78), sho_helix.c (+4 -5), varpos.c (+5 -5)
  • GDE/TREEPUZZLE/src: ml.h (+1 -1), ml1.c (+9 -9), ml2.c (+13 -13), model1.c (+1 -1), ppuzzle.c (+7 -7), ppuzzle.h (+4 -4), puzzle.h (+3 -4), puzzle1.c (+27 -64), puzzle2.c (+38 -42), sched.c (+3 -3)
westram 2023-08-05 14:43 Rev.: 19459


* activate warnings (reverts parts of r15483).

3 lines of code changed in 1 file:

  • GDE/PHYML20130708/phyml: configure.fallback (+3 -3)
westram 2023-08-05 14:41 Rev.: 19458


* do NOT suppress warnings in MrBAYES => {{{-Werror-implicit-function-declaration}}} now active. No error reported.

1 lines of code changed in 1 file:

  • GDE/MrBAYES/mrbayes_3.2.1: Makefile (+1 -1)
westram 2023-08-05 14:38 Rev.: 19457


* pass down {{{onlyC_flags}}}.
* use onlyC_flags in all Makefiles (inject using seq).
* patch SATIVA raxml code in tarball (one missing prototype).

7 lines of code changed in 2 files:

  • GDE/SATIVA: Makefile (+7 -6), sativa-RAxML-8.2.3-patched.tar.gz (changed)
westram 2023-08-05 14:34 Rev.: 19456


* fix builds of AxML, FASTDNAML + SUPPORT
- mostly fixed by add missing includes.
- had to change code order to avoid otherwise required definition of protytypes in SUPPORT.

455 lines of code changed in 10 files:

  • GDE/AxML: axml.c (+6 -3)
  • GDE/FASTDNAML: fastDNAml.c (+2), fastDNAml.h (+3 -6)
  • GDE/SUPPORT: Flatio.c (+3), Restriction.c (+109 -109), Zuk_to_gen.c (+39 -36), count.c (+200 -197), findall.c (+25 -25), lsadt.c (+35 -30), sho_helix.c (+33 -33)
westram 2023-08-05 14:22 Rev.: 19455


* keep {{{-W -Wall}}} everywhere in GDE => activates -Werror-implicit-function-declaration.
- Note: (re)build of GDE tools fails.

1 lines of code changed in 1 file:

  • GDE: Makefile (+1 -1)
westram 2023-08-05 14:19 Rev.: 19454


* hide message from autoreconf (misinterpreted by emacs).

4 lines of code changed in 1 file:

  • GDE/SINA: Makefile (+4 -2)
westram 2023-08-05 14:17 Rev.: 19453


* use {{{-W -Wall}}} in FASTTREE + fix warnings.

15 lines of code changed in 2 files:

  • GDE/FASTTREE: FastTree.c (+13 -8), Makefile (+2 -2)
westram 2023-08-05 14:15 Rev.: 19452


* get rid of {{{tmpnam()}}}.

18 lines of code changed in 2 files:

  • READSEQ: readseq.c (+17 -9), ureadseq.h (+1)
westram 2023-08-05 14:13 Rev.: 19451


* fix a bug (and silence {{{-Wparentheses}}}).
* fix other warnings

22 lines of code changed in 2 files:

  • READSEQ: readseq.c (+21 -20), ureadseq.c (+1 -3)
westram 2023-08-05 13:53 Rev.: 19450


* keep {{{-W -Wall}}} in READSEQ => build does fail due to implicit-function-declaration.
* include {{{stdlib.h}}} for missing prototypes => fixes build error.

2 lines of code changed in 2 files:

  • READSEQ: Makefile (+1 -1), readseq.c (+1)
westram 2023-08-05 13:50 Rev.: 19449


* shadow-location does appear as warning AND note (depending on gcc version)
- handle both.

67 lines of code changed in 1 file:

  • SOURCE_TOOLS: postcompile.pl (+67 -63)
westram 2023-08-05 13:48 Rev.: 19448


* enable + fix warnings in ISLAND_HOPPING.

8 lines of code changed in 2 files:

  • ISLAND_HOPPING: Makefile (-3), island_hopping.cxx (+8 -6)
westram 2023-08-05 13:46 Rev.: 19447


* suppression of warnings for source-subtrees:
- comment + warn when suppressed (currently suppressed in GDE)

16 lines of code changed in 5 files:

  • GDE: Makefile (+8 -2)
  • GDE/MrBAYES/mrbayes_3.2.1: Makefile (+1)
  • GL: Makefile (+3 -1)
  • ISLAND_HOPPING: Makefile (+2 -3)
  • SL: Makefile (+2 -1)
westram 2023-08-05 13:40 Rev.: 19446


* introduce {{{onlyC_flags}}}
- flags used for C compilation only.
- similar to {{{cxxflags}}} (references added).
- pass down onlyC_flags into AxML, CLUSTAL, CLUSTALW, FASTDNAML, FASTTREE, GL, MrBAYES, PHYLIP, PHYML*, RAxML, SINA(unused), SOURCE_TOOLS, SUPPORT, TOOLS, TREEGEN + TREEPUZZLE.
- set flags to {{{-Werror-implicit-function-declaration}}}
* error is only effective in a small part of these modules.
* TODO: need to activate warnings -> will activate the error as well.

73 lines of code changed in 21 files:

  • Makefile (+3 -1)
  • GDE/AxML: Makefile (+1 -1)
  • GDE/CLUSTAL: Makefile (+2 -2)
  • GDE/CLUSTALW: Makefile (+2 -2)
  • GDE/FASTDNAML: Makefile (+2 -2)
  • GDE/FASTTREE: Makefile (+1 -1)
  • GDE/MrBAYES: Makefile (+1 -1)
  • GDE/PHYLIP: Makefile (+47 -46)
  • GDE/PHYML: Makefile (+1 -1)
  • GDE/PHYML20130708: Makefile (+1 -1)
  • GDE/RAxML: Makefile (+1 -1)
  • GDE/SINA: Makefile (+2 -1)
  • GDE/SUPPORT: Makefile (+1 -1)
  • GDE/TREEPUZZLE: Makefile (+1 -1)
  • GL/glAW: Makefile (+1 -1)
  • GL/glpng: Makefile (+1 -1)
  • READSEQ: Makefile (+1 -1)
  • SOURCE_TOOLS: Makefile (+1 -1), export2sub (+1 -1)
  • TOOLS: Makefile (+1 -1)
  • TREEGEN: Makefile (+1 -1)
westram 2023-08-05 13:32 Rev.: 19445


* check all {{{A_CC}}} calls (=plain C compilations) whether they are used.

0 lines of code changed in 1 file:

  • PERLTOOLS: Makefile (-3)
westram 2023-08-05 13:29 Rev.: 19444


* add header (fixes previous commit)

64 lines of code changed in 1 file:

  • TEMPLATES: gets_noOverflow.h (new 64)
westram 2023-08-05 13:27 Rev.: 19443


* fix use of {{{gets()}}} (globally):
- provide a drop-in replacement for {{{gets()}}}
* only requires to specify buffersize.
- use {{{gets_noOverflow()}}} in READSEQ, SUPPORT, CLUSTAL + CLUSTALW.
* adapt {{{getstr()}}}

95 lines of code changed in 16 files:

  • GDE/CLUSTAL: Makefile (+2), amenu.c (+19 -18), sequence.c (+2 -2), util.c (+7 -5)
  • GDE/CLUSTALW: Makefile (+2), amenu.c (+14 -14), clustalw.h (+1 -1), interface.c (+18 -16), sequence.c (+1 -1), trees.c (+2 -2), util.c (+7 -5)
  • GDE/SUPPORT: Makefile (+2), Zuk_to_gen.c (+5 -3)
  • READSEQ: Makefile (+1), readseq.c (+11 -8)
  • SOURCE_TOOLS: generate_all_links.sh (+1)
westram 2023-08-05 13:24 Rev.: 19442


* reactivate implicit-fallthrough warnings and fix code.

3 lines of code changed in 2 files:

  • TOOLS: Makefile (+1 -7), arb_a2ps.c (+2)

(8957 more)

Generated by StatSVN 0.7.0