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westram
2019-10-30 11:41
#12
Rev.: 18194
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112 lines of code changed in 8 files:
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GENOM:
GEN_map.cxx (+1 -1)
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PROBE_DESIGN:
SaiProbeVisualization.cxx (+1 -1)
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RNA3D:
RNA3D_Interface.cxx (+1 -1)
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SECEDIT:
SEC_main.cxx (+1 -1)
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SL/TREEDISP:
TreeCallbacks.cxx (+7 -6)
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WINDOW:
AW_preset.cxx (+97 -39),
Makefile (+1),
aw_color_groups.hxx (+3 -4)
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westram
2019-10-28 17:23
#11
Rev.: 18186
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167 lines of code changed in 12 files:
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ARBDB:
adlang1.cxx (+6),
gb_aci.h (+2 -2),
gb_aci_impl.h (+8)
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HELP_SOURCE/oldhelp:
mg_species.hlp (+13 -1)
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SL/XFERGUI:
xfergui.cxx (+105 -10)
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SL/XFERSET:
Makefile (new),
xferset.cxx (+17 -8),
xferset.h (+2 -2)
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lib/nas:
.gitignore (+1)
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lib/pictures:
fts_ruledef.fig (+12 -12)
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westram
2019-10-16 17:20
#10
Rev.: 18176
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18 lines of code changed in 3 files:
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HELP_SOURCE/oldhelp:
rename.hlp (+2 -2),
sp_IDs.hlp (+7 -3)
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lib/pictures/awtc:
autoren.fig (+9 -7)
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westram
2019-10-10 18:16
#9
Rev.: 18168
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3505 lines of code changed in 166 files:
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Makefile (+4 -1)
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SOURCE_TOOLS:
sortfig.pl (new 261)
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lib/pictures:
RNA3D_ChangeMolecule.fig (+1 -180),
RNA3D_DisplayBases.fig (+31 -224),
RNA3D_DisplayHelices.fig (+23 -208),
RNA3D_DisplayOptions.fig (+21 -214),
RNA3D_SeqMapping.fig (+41 -234),
ad_align.fig (+17 -17),
ad_branch.fig (+26 -32),
ad_cons_tree.fig (+8 -8),
ad_conv.fig (+5 -5),
ad_delof.fig (+5 -5),
ad_ext.fig (+12 -12),
ad_ext_group.fig (+5 -5),
ad_fcrea.fig (+15 -8),
ad_gen_create.fig (+28 -36),
ad_kreo.fig (+12 -16),
ad_one_tree.fig (+1 -1),
ad_query.fig (+38 -56),
ad_selManNam.fig (+5 -5),
ad_spec.fig (+9 -9),
ad_spec_nn.fig (+23 -23),
ad_spec_nnm.fig (+32 -34),
ad_tree.fig (+26 -28),
arb_intro.fig (+35 -49),
calltexe.fig (+23 -15),
chimera_check.fig (+28 -30),
compare_taxonomy.fig (+12 -12),
compare_topo.fig (+13 -21),
concatenate.fig (+11 -11),
dbbrowser.fig (+20 -22),
di_cancel.fig (+30 -27),
di_clusters.fig (+19 -19),
di_ge_ma.fig (+54 -56),
displayField.fig (+6 -185),
ed_al_ex.fig (+29 -22),
ed_al_sp.fig (+86 -81),
ed_key.fig (+15 -23),
fileselect.fig (+8 -8),
fts_ruledef.fig (+23 -23),
fts_select.fig (+12 -14),
gde3item.fig (+24 -24),
gdeitem.fig (+23 -25),
gdeitem_simple.fig (+9 -13),
gen_options.fig (+37 -59),
group_search.fig (+65 -67),
group_trees.fig (+5 -5),
help.fig (+6 -6),
insdel.fig (+4 -4),
insdel_sai.fig (+16 -16),
item_shader_cfg.fig (+30 -38),
iupac.fig (+25 -25),
join_species.fig (+6 -6),
load_box.fig (+15 -17),
macro_select.fig (+19 -23),
mark_configs.fig (+6 -6),
merge_species.fig (+11 -15),
message.fig (+9 -11),
move_groups.fig (+44 -56),
mp_results.fig (+25 -29),
multiprobe.fig (+38 -46),
nt_selection.fig (+23 -27),
nt_sort.fig (+14 -18),
optimize.fig (+4 -4),
pd_admin.fig (+16 -16),
pd_main.fig (+37 -39),
pd_match.fig (+35 -37),
pd_match_iupac.fig (+15 -19),
pd_match_probe_collection.fig (+53 -57),
pd_match_with_specificity.fig (+19 -21),
pd_reslt.fig (+1 -1),
pd_spec.fig (+23 -23),
pm_spec.fig (+39 -43),
prd_main.fig (+54 -72),
probeSaiColors.fig (+26 -28),
proteinViewer.fig (+97 -137),
realign_dna.fig (+10 -10),
saiColorRange.fig (+26 -30),
save_as.fig (+20 -22),
sec_bonddef.fig (+1 -1),
sec_display.fig (+11 -11),
sec_imexport.fig (+32 -25),
sel_box.fig (+7 -7),
sel_box_nds.fig (+9 -9),
sel_box_tree.fig (+9 -9),
sel_box_user.fig (+11 -11),
select_simple.fig (+1 -1),
seq_quality.fig (+36 -217),
sl_l_box.fig (+7 -7),
sl_s_box.fig (+8 -8),
stat_main.fig (+17 -10),
status.fig (+10 -12),
submiss.fig (+13 -13),
syncscroll.fig (+5 -5),
trackali.fig (+6 -6),
transpro.fig (+11 -11),
tree_export.fig (+17 -21),
visualizeSAI.fig (+22 -205)
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lib/pictures/awt:
align.fig (+24 -17),
ascii_print.fig (+48 -41),
col_statistic.fig (+23 -16),
edit_config.fig (+13 -15),
export.fig (+19 -23),
export_db.fig (+22 -22),
export_test.fig (+5 -5),
field_sel.fig (+2 -2),
field_sel_new.fig (+5 -5),
filter.fig (+45 -40),
import_db.fig (+26 -26),
import_test.fig (+17 -19),
manage_config.fig (+10 -10),
nds.fig (+2 -2),
print.fig (+53 -63),
secExport.fig (+9 -9),
srt_select.fig (+6 -6),
tree_settings.fig (+11 -15),
www.fig (+2 -2)
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lib/pictures/awtc:
autoren.fig (+22 -15),
names_admin.fig (+4 -4)
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lib/pictures/consensus:
expert.fig (+57 -576),
max_freq.fig (+24 -17)
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lib/pictures/cpro:
csp_2_gnuplot.fig (+16 -16),
parsimony.fig (+20 -24)
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lib/pictures/edit4:
consensus.fig (+46 -561),
create_seq.fig (+3 -3),
create_seq_fc.fig (+5 -5),
editmenu.fig (+91 -111),
load_config.fig (+3 -3),
load_sai.fig (+2 -2),
message.fig (+17 -12),
missbase.fig (+14 -16),
modsai.fig (+13 -15),
nds.fig (+9 -11),
options.fig (+22 -22),
replace.fig (+5 -5),
save_config.fig (+11 -13),
save_search.fig (+10 -10),
search.fig (+46 -64),
viewdiff.fig (+15 -17)
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lib/pictures/faligner:
faligner.fig (+38 -40),
family_settings.fig (+6 -6),
islandhopping.fig (+33 -41)
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lib/pictures/merge:
alignment.fig (+31 -24),
configs.fig (+18 -20),
extended.fig (+14 -14),
main.fig (+16 -20),
mg_def_gene_species_fields.fig (+28 -32),
mg_mergetaggedfield.fig (+8 -8),
mg_transfield.fig (+3 -3),
names.fig (+19 -21),
preserves.fig (+14 -14),
seqcheck.fig (+13 -13),
species.fig (+56 -64),
trees.fig (+8 -8)
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lib/pictures/pars:
init.fig (+31 -24),
kernlin.fig (+23 -23),
tree_opti.fig (+10 -10)
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lib/pictures/phylo:
filter.fig (+18 -18),
save_markerline.fig (+21 -14),
select_ali.fig (+1 -1)
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lib/pictures/query:
color_loadsave.fig (+6 -6),
colorize.fig (+3 -3),
modify_fields.fig (+21 -21),
set_protection.fig (+12 -14),
write_fields.fig (+7 -7)
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lib/pictures/window:
advice.fig (+15 -21)
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westram
2019-10-08 16:51
#8
Rev.: 18159
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273 lines of code changed in 75 files:
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ARBDB:
adChangeKey.cxx (+1 -1),
adGene.cxx (+2 -2),
ad_colorset.cxx (+2 -2),
ad_load.cxx (+2 -2),
ad_t_prot.h (+1 -1),
adali.cxx (+22 -9),
adhashtools.cxx (+2 -1),
aditem.cxx (+13 -4),
adlang1.cxx (+3 -2),
adquery.cxx (-2)
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ARB_GDE:
GDE.cxx (+1 -1)
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AWT:
AWT_config_manager.cxx (+1 -1),
AWT_db_browser.cxx (+1 -1),
AWT_input_mask.cxx (+1 -1),
AWT_sel_boxes.cxx (+4 -4)
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AWTI:
AWTI_edit.cxx (+1 -1)
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CORE:
arb_strbuf.h (+1 -1)
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DIST:
DI_clusters.cxx (+2 -3),
DI_matr.cxx (+1 -1)
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EDIT4:
ED4_ProteinViewer.cxx (+2 -2),
ED4_cursor.cxx (+2 -2),
ED4_dots.cxx (+1 -1),
ED4_naligner.cxx (+1 -1),
ED4_no_class.cxx (+1 -1),
ED4_protein_2nd_structure.cxx (+1 -1),
ED4_terminal.cxx (+1 -1),
ED4_visualizeSAI.cxx (+2 -2)
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GENOM:
EXP_interface.cxx (+1 -1),
GEN_gene.cxx (+1 -1),
GEN_interface.cxx (+2 -2),
GEN_map.cxx (+7 -4)
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MERGE:
MG_adapt_ali.cxx (+1 -1),
MG_checkfield.cxx (+1 -1),
MG_gene_species.cxx (+2 -2),
MG_preserves.cxx (+2 -2),
MG_species.cxx (+35 -26)
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MULTI_PROBE:
MP_mo_liste.cxx (+1 -1),
MP_noclass.cxx (+1 -1)
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NTREE:
NT_concatenate.cxx (+12 -11),
NT_dbrepair.cxx (+1 -1),
NT_edconf.cxx (+1 -1),
NT_main.cxx (+1 -1),
NT_shadeTree.cxx (+1 -1),
ScrollSynchronizer.cxx (+1 -2),
ad_spec.cxx (+1 -1)
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PARSIMONY:
PARS_main.cxx (+5 -5)
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PHYLO:
PH_data.cxx (+1 -1)
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PROBE:
PT_io.cxx (+3 -3),
PT_new_design.cxx (+2 -2)
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PROBE_DESIGN:
probe_design.cxx (+2 -2)
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RNACMA:
AlignedSequenceLoader.cxx (+1 -1)
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SL/ALILINK:
TranslateRealign.cxx (+1 -1)
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SL/AW_NAME:
AW_rename.cxx (+9 -9)
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SL/DB_QUERY:
db_query.cxx (+2 -3)
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SL/DB_SCANNER:
db_scanner.cxx (+19 -12)
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SL/DB_UI:
ui_species.cxx (+2 -2)
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SL/FAST_ALIGNER:
fast_aligner.cxx (+25 -21)
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SL/FILTSEQEXP:
FilteredExport.cxx (+4 -4)
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SL/GROUP_SEARCH:
group_search.cxx (+1 -1)
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SL/GUI_ALIVIEW:
AWT_filter.cxx (+2 -1),
ColumnStat.cxx (+1 -1)
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SL/INSDEL:
insdel.cxx (+4 -3)
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SL/MACROS:
dbserver.cxx (+1 -1)
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SL/PTCLEAN:
ptclean.cxx (+2 -2)
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SL/SEQIO:
seq_export.cxx (+1 -1)
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SL/SEQUENCE:
AP_sequence.cxx (+5 -5)
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SL/TRANSLATE:
Translate.cxx (+1 -1)
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SL/TREEDISP:
TreeCallbacks.cxx (+3 -4),
TreeDisplay.cxx (+1 -1)
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SL/XFERSET:
xferset.cxx (+10 -7)
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TEMPLATES:
dupstr.h (+6)
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TOOLS:
arb_gene_probe.cxx (+12 -7)
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UNIT_TESTER:
test_unit.h (+1 -1)
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WINDOW:
AW_preset.cxx (+1 -1),
AW_question.cxx (+1 -1)
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westram
2019-10-07 15:40
#7
Rev.: 18149
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10 lines of code changed in 1 file:
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HELP_SOURCE/oldhelp:
next_neighbours_listed.hlp (+10 -1)
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westram
2019-10-07 14:01
#6
Rev.: 18148
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1 lines of code changed in 1 file:
-
westram
2019-10-07 13:56
#5
Rev.: 18147
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143 lines of code changed in 5 files:
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ARBDB:
adGene.cxx (+1 -1),
adlang1.cxx (+103 -22),
adquery.cxx (+1 -1),
gb_aci.cxx (+20 -1)
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HELP_SOURCE/oldhelp:
aci.hlp (+18)
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westram
2019-10-07 13:50
#4
Rev.: 18146
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13 lines of code changed in 4 files:
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ARBDB:
adGene.cxx (+10 -5),
ad_prot.h (+1),
ad_t_prot.h (+1),
aditem.cxx (+1 -1)
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westram
2019-10-07 13:46
#3
Rev.: 18145
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13 lines of code changed in 1 file:
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SL/DB_QUERY:
db_query.cxx (+13 -1)
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westram
2019-10-03 09:08
#2
Rev.: 18140
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100 lines of code changed in 11 files:
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Makefile (+3 -1)
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CORE:
Makefile (+2),
arb_misc.cxx (+17)
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GDE/RAxML8:
Makefile (+4)
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PROBE_SET:
Makefile (+4 -2)
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SL/XFERGUI:
Makefile (new),
xfergui.cxx (new)
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TOOLS:
arb_export_sequences.cxx (+1 -1)
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WINDOW:
AW_inotify.cxx (+38 -17)
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westram
2019-10-01 09:30
#1
Rev.: 18128
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51 lines of code changed in 3 files:
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arb_README.txt (+49 -34)
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WINDOW:
AW_xfont.cxx (+1 -1),
aw_def.hxx (+1 -1)