* deny execution.
1 lines of code changed in 1 file:
* added script to delete unlisted trees.
88 lines of code changed in 3 files:
* added script to delete unlisted species selections.
85 lines of code changed in 3 files:
* added script to delete unlisted SAIs.
106 lines of code changed in 3 files:
* fix info message: protected are only kept when they exist.
* show warning after deletion.
4 lines of code changed in 1 file:
* fix mnemonics:
- in 'Tree' menu:
* p: was used for 'Print tree' + 'Compare topology...'
* o: 'Sync tree scrolling..' -> 'Compare topology...'
* e: 'Beautify tree' -> 'Sync tree scrolling..'
* u: 'Mark duplicates' -> 'Beautify tree'
* k: now used for 'Mark duplicates'
* removed 'Select tree' (also bound to tree button).
* T: used for 'Tree admin' now (was 'Select tree')
* i: used for (genome-only) 'Relink tree to organisms' (was 'Tree admin')
- in 'Sequence' menu:
* S: was used for 'Split sequences' + 'Align Sequences'.
* l: now used for 'Align sequences'.
- in species transfer of merge tool.
- in properties menu of 'ARB gene map'.
- in properties menu of 'PROBE and SAI' (most changed).
18 lines of code changed in 4 files:
* emphasize reference- and ptserver-database have to be the same database!
18 lines of code changed in 1 file:
* reintegrates 'refactor' into 'trunk'
- polish {{{GBS_strstruct}}}
* adds: log:branches/refactor@19339:19345
101 lines of code changed in 9 files:
* reintegrates 'refactor' into 'trunk'
- eliminates old interface of {{{GBS_strstruct}}}
- add a few new unittests (editor-config string + some PT-SERVER-functions)
* adds: log:branches/refactor@19300:19338
987 lines of code changed in 58 files:
* reintegrates 'refactor' into 'trunk'
- new unittest for MULTI_PROBE functionality
* adds: log:branches/refactor@19297:19299
97 lines of code changed in 2 files:
* reintegrates 'refactor' into 'trunk'
- refactored MULTI_PROBE to support unittest.
* adds: log:branches/refactor@19286:19296
221 lines of code changed in 14 files: