February 2022 Commit Log

Number of Commits:
26
Number of Active Developers:
1
westram 2022-02-28 14:00 Rev.: 18938


* add TAs at callers of mark_species_in_tree/mark_species_in_rest_of_tree.
* eliminate TAs opened inside mark_species_in_tree...().

8 lines of code changed in 1 file:

westram 2022-02-28 13:58 Rev.: 18937


* mention various 'count species' menu entries.
* remove unused .hlp (count now refers to same helpfile as mark).

0 lines of code changed in 3 files:

westram 2022-02-28 13:53 Rev.: 18936


* when called with flag==3 now count marked species in
- GBT_mark_all+GBT_mark_all_that
- mark_species_in_tree+mark_species_in_tree_that
* add count feature to all mark menus + submenus
- generate reports for different set of counted species.
- show top-area hint only once per arb session.

150 lines of code changed in 6 files:

westram 2022-02-28 13:48 Rev.: 18935


* 'save' button now also saves content of message box to ~/arb-message-box.txt
* fix buttons in message box (+size, better pos).

34 lines of code changed in 2 files:

westram 2022-02-28 13:46 Rev.: 18934


* add button to save properties
- allows to change default message box size + position
* cosmetic:
- separate code generating message box and progress bar.
- rename progress bar window.
- condense buttons.

59 lines of code changed in 3 files:

westram 2022-02-09 15:31 Rev.: 18933


* detect whether build is running in homebrew
- use {{{HOMEBREW_FAIL_LOG_LINES}}} or 15

14 lines of code changed in 1 file:

westram 2022-02-09 12:46 Rev.: 18931


* define unique IDs for jobs running via GDE:
- provide in menu-code via {{{$AGDE_JOBID}}}.
- use as window-logname => allows to relate separate parts of jobs in arb log.

44 lines of code changed in 2 files:

westram 2022-02-09 12:41 Rev.: 18930


* tee output from commands running in console windows into log.
* cat log to standard arb console after window is closed.

5 lines of code changed in 1 file:

westram 2022-02-08 13:27 Rev.: 18929


* check whether data exists before checking its protection (fixes #842)

6 lines of code changed in 1 file:

westram 2022-02-07 18:12 Rev.: 18927


* add 'arb_catlog' (cat file to stdout wrapped in delimiter lines).

13 lines of code changed in 2 files:

westram 2022-02-07 18:09 Rev.: 18926


* do not trace arb_raxml script.

1 lines of code changed in 1 file:

westram 2022-02-07 16:32 Rev.: 18925


* add excerpting targets {{{TARFILE}}} + {{{TARFILE_QUICK}}}
- use them from build scripts.

14 lines of code changed in 3 files:

westram 2022-02-07 16:28 Rev.: 18924


* move main targets to bottom.
* separate sections + reorder.

26 lines of code changed in 1 file:

westram 2022-02-07 16:25 Rev.: 18923


* move cloc section.
* use system-cloc.

20 lines of code changed in 1 file:

westram 2022-02-07 16:22 Rev.: 18922


* 'tarfile_quick' now depends on 'all'
* fix build scripts:
- 'build' was executed twice.
- 'clean'+'tarfile_quick' -> 'tarfile'.

12 lines of code changed in 3 files:

westram 2022-02-07 16:20 Rev.: 18921


* remove obsolete targets
- 'release_quick' (relict from old release strategy).
- 'build_CTARGET' and 'reset_committed_build' + related code.

0 lines of code changed in 4 files:

westram 2022-02-07 15:11 Rev.: 18920


* targets 'all' + 'rebuild' failed to report error since r18917
- fixed by adding 'false' to failing else branch
* remove recursive target 'logwrap_target'
- caused to many extra error lines **after** excerpt - renders the whole idea useless.
* instead
- add separate extracting targets for 'all' + 'rebuild' (ALL + REBUILD)
- store needed code in variables to DRY it
* reduce size of excerpt by 2 lines (which get printed after excerpt in case of failure). change header line.
* add decription for targets ALL + REBUILD

20 lines of code changed in 2 files:

westram 2022-02-07 15:01 Rev.: 18919


* fix indentation.
* do not print date on separator when showing help.

38 lines of code changed in 1 file:

westram 2022-02-04 16:53 Rev.: 18918


* keep logfiles for 2 weeks.

2 lines of code changed in 1 file:

westram 2022-02-04 16:51 Rev.: 18917


* add target 'logwrap_target' (allows to wrap any target).
- wrap targets 'all' + 'rebuild'.
* document possibility for silent builds.
* pass name of logfile to script + refer to log in header.
* reserve space for header line.

33 lines of code changed in 2 files:

westram 2022-02-03 11:48 Rev.: 18916


* filter error-messages from failed {{{make all}}} and dump at bottom
* log of last build remains in {{{build.log}}}

120 lines of code changed in 3 files:

westram 2022-02-02 12:43 Rev.: 18915


* use uniform variable name 'cmd'.

18 lines of code changed in 4 files:

westram 2022-02-02 12:41 Rev.: 18914


* fix error handling for piped commands in perl
- when forking piped commands
* use error message ($!) instead of exitcode ($?).
* use message 'failed to fork'.
- when closing piped commands
* show IPC errors and exitcode of command.

32 lines of code changed in 16 files:

westram 2022-02-02 12:34 Rev.: 18913


* remove .tmp file on script failure (otherwise next build will succeed w/o real success).

1 lines of code changed in 1 file:

westram 2022-02-01 16:03 Rev.: 18912


* target 'patch' always patches versus svn.

13 lines of code changed in 2 files:

westram 2022-02-01 15:48 Rev.: 18911


* partial merge from 'stable' into 'trunk'
* adds: [18908/branches/stable]

4 lines of code changed in 1 file:

January 2022 »

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