June 2006 Commit Log

Number of Commits:
69
Number of Active Developers:
2
westram 2006-06-26 15:40 Rev.: 4093

- ignore ChangeLog

4 lines of code changed in 2 files:

westram 2006-06-26 15:39 Rev.: 4092

- ignore some generated tools

8 lines of code changed in 1 file:

westram 2006-06-26 14:56 Rev.: 4091

- added eacute

4 lines of code changed in 1 file:

westram 2006-06-26 14:07 Rev.: 4090

- excludes PERL2ARB/ARB.c und ARB.xs from source tarball

2 lines of code changed in 1 file:

westram 2006-06-26 14:06 Rev.: 4089

- fixed color and fillstyle for circles

14 lines of code changed in 1 file:

westram 2006-06-26 12:18 Rev.: 4088

- added XFIG 3.2

2 lines of code changed in 1 file:

westram 2006-06-26 12:15 Rev.: 4087

- xfig-color-export (patch from Elmar Pruesse)

93 lines of code changed in 9 files:

westram 2006-06-26 12:15 Rev.: 4086

- xfig-color-export (patch from Elmar Pruesse)
=> ARB saves in 'FIG 3.2' format now

54 lines of code changed in 1 file:

westram 2006-06-26 11:19 Rev.: 4085

- patch from Elmar to limit the max. used memory (e.g. for PT-Server build)
- fixed typo in address-range calculation

16 lines of code changed in 1 file:

westram 2006-06-26 09:53 Rev.: 4084

- changed generated tree name for 'raxml'

1 lines of code changed in 1 file:

westram 2006-06-26 09:53 Rev.: 4083

- changed generated tree name for 'proml'

1 lines of code changed in 1 file:

westram 2006-06-26 09:53 Rev.: 4082

- cosmetics

1 lines of code changed in 1 file:

westram 2006-06-26 09:52 Rev.: 4081

- changed generated tree name for 'protml'

1 lines of code changed in 1 file:

westram 2006-06-26 09:52 Rev.: 4080

*** empty log message ***

6 lines of code changed in 1 file:

westram 2006-06-26 09:38 Rev.: 4079

- added PHYML userguide

6 lines of code changed in 1 file:

westram 2006-06-26 09:38 Rev.: 4078

- added PHYML help

2 lines of code changed in 1 file:

westram 2006-06-26 09:37 Rev.: 4077

*** empty log message ***

5 lines of code changed in 1 file:

westram 2006-06-23 13:57 Rev.: 4076

- PHYML userdoc

503 lines of code changed in 1 file:

westram 2006-06-23 12:36 Rev.: 4075

- mentioned PHYML

3 lines of code changed in 1 file:

westram 2006-06-23 12:36 Rev.: 4074

- calls PHYML submakefile

4 lines of code changed in 1 file:

westram 2006-06-23 12:36 Rev.: 4073

- phyml 2.4.5

14673 lines of code changed in 22 files:

westram 2006-06-23 12:34 Rev.: 4072

- changed PHYML menu keys

2 lines of code changed in 1 file:

westram 2006-06-23 11:28 Rev.: 4071

typo

1 lines of code changed in 1 file:

westram 2006-06-23 11:19 Rev.: 4070

- show how to use SAI.pm

78 lines of code changed in 1 file:

westram 2006-06-23 11:19 Rev.: 4069

- some helper functions to read SAI information (esp. POS_VAR_BY_PARSIMONY)

77 lines of code changed in 1 file:

westram 2006-06-23 11:19 Rev.: 4068

- prototypes updated

4 lines of code changed in 1 file:

westram 2006-06-23 11:18 Rev.: 4067

- added GB_read_from_ints, GB_read_from_floats (intended to be used from perl)

40 lines of code changed in 1 file:

westram 2006-06-23 11:18 Rev.: 4066

- added GB_first/GB_next (intended to be used from perl)

15 lines of code changed in 1 file:

westram 2006-06-20 14:40 Rev.: 4065

- depends updated

1 lines of code changed in 1 file:

westram 2006-06-20 14:40 Rev.: 4064

- added AWT_translate.o
- depends updated

15 lines of code changed in 1 file:

westram 2006-06-20 14:39 Rev.: 4063

- added awt_translate.hxx

1 lines of code changed in 1 file:

westram 2006-06-20 14:39 Rev.: 4062

- moved awt_pro_a_nucs_convert() and findTranslationTable() to AWT

5 lines of code changed in 1 file:

westram 2006-06-20 14:39 Rev.: 4061

- moved findTranslationTable() and awt_pro_a_nucs_convert() from ad_transpro.cxx

125 lines of code changed in 2 files:

westram 2006-06-20 11:46 Rev.: 4060

- depends updated

0 lines of code changed in 2 files:

westram 2006-06-20 11:44 Rev.: 4059

- fixed call to GBT_link_tree()
- fixed call to AP_tree::load()

3 lines of code changed in 1 file:

westram 2006-06-20 11:43 Rev.: 4058

- fixed call to GBT_link_tree()

13 lines of code changed in 6 files:

westram 2006-06-20 11:43 Rev.: 4057

- added NT_mark_duplicates()
- added NT_alltree_remove_leafs() [still buggy]

140 lines of code changed in 1 file:

westram 2006-06-20 11:41 Rev.: 4056

- fixed calls to AP_tree::load

2 lines of code changed in 1 file:

westram 2006-06-20 11:41 Rev.: 4055

- added members zombies+duplicates to AWT_graphic_tree
- added get_zombies_and_duplicates()

6 lines of code changed in 1 file:

westram 2006-06-20 11:41 Rev.: 4054

- AP_tree::load returns # of zombies/duplicates
- added AP_tree::mark_duplicates()

4 lines of code changed in 1 file:

westram 2006-06-20 11:40 Rev.: 4053

- NT_reload_tree_event warns about zombies + duplicates

20 lines of code changed in 1 file:

westram 2006-06-20 11:40 Rev.: 4052

- fixed calls to GBT_link_tree()
- AP_tree::load returns # of zombies/duplicates
- added AP_tree::mark_duplicates()

36 lines of code changed in 1 file:

westram 2006-06-20 11:39 Rev.: 4051

- AWT_graphic_tree::load collects # of zombies/duplicates

2 lines of code changed in 1 file:

westram 2006-06-20 11:38 Rev.: 4050

- handle case when not enough nucleotides left

41 lines of code changed in 1 file:

westram 2006-06-20 11:38 Rev.: 4049

- prototypes updated

5 lines of code changed in 3 files:

westram 2006-06-20 11:36 Rev.: 4048

- fixed call to GBT_link_tree()

2 lines of code changed in 2 files:

westram 2006-06-20 11:36 Rev.: 4047

- added GBT_link_tree_using_species_hash()
- GBT_link_tree counts zombies and duplicates
- speeded up tree linking by species hash
- excluded GBT_read_gene_sequence from perl interface

66 lines of code changed in 1 file:

westram 2006-06-20 11:23 Rev.: 4046

- added phyml

110 lines of code changed in 1 file:

westram 2006-06-20 11:23 Rev.: 4045

- phyml wrapper

107 lines of code changed in 1 file:

artemov 2006-06-16 09:28 Rev.: 4044

*** empty log message ***

109 lines of code changed in 7 files:

westram 2006-06-14 13:07 Rev.: 4043

- includes fixed (make depends had problems with)

25 lines of code changed in 13 files:

westram 2006-06-13 14:35 Rev.: 4042

- comment

4 lines of code changed in 1 file:

westram 2006-06-13 14:34 Rev.: 4041

- spelling (konsensus)

3 lines of code changed in 3 files:

westram 2006-06-13 14:33 Rev.: 4040

- changed button name

1 lines of code changed in 1 file:

westram 2006-06-13 14:31 Rev.: 4039

- gcc 2.95.3 fixes (isalpha etc. was not in namespace std, so don't declare explicit namespace)

12 lines of code changed in 3 files:

westram 2006-06-08 20:29 Rev.: 4038

* ARBDB/adtools.c: - intermidiate fix for sequences of joined genes

88 lines of code changed in 1 file:

westram 2006-06-08 19:03 Rev.: 4037

* GENOM/GEN_gene.cxx: - assertion the pos_begin<=pos_end

4 lines of code changed in 1 file:

westram 2006-06-07 17:54 Rev.: 4036

- gcc 4.1.1 fix

1 lines of code changed in 1 file:

westram 2006-06-07 17:54 Rev.: 4035

- fixed floating-point comparison

2 lines of code changed in 1 file:

westram 2006-06-07 17:53 Rev.: 4034

- added extra compiler warnings (when using gcc 3.00 ++)

25 lines of code changed in 1 file:

westram 2006-06-07 17:20 Rev.: 4033

- added warnings (version dependent)

19 lines of code changed in 1 file:

westram 2006-06-07 16:29 Rev.: 4032

- gcc 4.1.1 fix

8 lines of code changed in 4 files:

westram 2006-06-07 16:29 Rev.: 4031

- undefined behavior fixed

1 lines of code changed in 1 file:

westram 2006-06-07 16:28 Rev.: 4030

- gcc 4.1.1 fixes

9 lines of code changed in 1 file:

westram 2006-06-07 16:28 Rev.: 4029

- cosmetics

2 lines of code changed in 1 file:

westram 2006-06-07 16:28 Rev.: 4028

- added gcc 4.1.1

1 lines of code changed in 1 file:

westram 2006-06-07 16:11 Rev.: 4027

- updated depends

101 lines of code changed in 16 files:

westram 2006-06-07 16:08 Rev.: 4026

- fixed include wrappers

63 lines of code changed in 7 files:

westram 2006-06-07 16:08 Rev.: 4025

- removed include wrappers (only put them into headers)

2 lines of code changed in 2 files:

May 2006 »

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