October 2006 Commit Log

Number of Commits:

33

Number of Active Developers:

2

westram 2006-10-27 12:12 #33 Rev.: 4227

- now generates pdf.gz and ps.gz in lib/help

25 lines of code changed in 1 file:

• HELP_SOURCE: Makefile (+25 -3)

westram 2006-10-27 12:10 #32 Rev.: 4226

- gzipped pdf

1 lines of code changed in 1 file:

• HELP_SOURCE/oldhelp: rna3d_manual.pdf.gz (new 1)

westram 2006-10-27 11:44 #31 Rev.: 4225

- old, as the name suggests

0 lines of code changed in 1 file:

• lib: arb_tcp_old.dat (del)

westram 2006-10-27 11:41 #30 Rev.: 4224

- ignore 'pts'

1 lines of code changed in 1 file:

• lib: .cvsignore (+1)

westram 2006-10-27 11:41 #29 Rev.: 4223

- ignore .depends

1 lines of code changed in 1 file:

• PROBE_WEB/CLIENT: .cvsignore (+1)

westram 2006-10-27 11:41 #28 Rev.: 4222

- ignore GENC, GENH

4 lines of code changed in 2 files:

• ORS_COM: .cvsignore (+2)
• PROBE_COM: .cvsignore (+2)

westram 2006-10-27 11:41 #27 Rev.: 4221

- ignore blib

4 lines of code changed in 1 file:

• PERL2ARB: .cvsignore (+4 -3)

westram 2006-10-27 11:40 #26 Rev.: 4220

- ignore GENC, GENH, O

3 lines of code changed in 1 file:

• NAMES_COM: .cvsignore (+3)

westram 2006-10-27 11:40 #25 Rev.: 4219

- ignore PERL5, INCLUDE

2 lines of code changed in 1 file:

• .cvsignore (+2)

westram 2006-10-27 11:40 #24 Rev.: 4218

- target 'nas' -> 'preplib' (+changed caller)

4 lines of code changed in 1 file:

• Makefile (+4 -4)

westram 2006-10-27 11:33 #23 Rev.: 4217

- started a more recent bug list

3 lines of code changed in 2 files:

• lib/BUGS: gde_linux6.0.txt (del), known_bugs.txt (new 3)

westram 2006-10-27 11:33 #22 Rev.: 4216

- remove compile logs in any case

1 lines of code changed in 1 file:

• SL: Makefile (+1 -1)

westram 2006-10-27 11:32 #21 Rev.: 4215

- added changes from arb_tcp.dat

12 lines of code changed in 1 file:

• lib: arb_tcp_org.dat (+12 -11)

westram 2006-10-27 11:32 #20 Rev.: 4214

- removed from CVS - now generated if not already present

0 lines of code changed in 1 file:

• lib: arb_tcp.dat (del)

westram 2006-10-27 11:32 #19 Rev.: 4213

- removed dead targets
- added target tcpdat (to generate arb_tcp.dat in compile environment)

6 lines of code changed in 1 file:

• lib: Makefile (+6 -27)

westram 2006-10-27 11:11 #18 Rev.: 4212

- renamed or moved several files

256 lines of code changed in 8 files:

• AWT: AWT_imp_exp.cxx (+1 -1), newick_doc.html (del)
• PERL_SCRIPTS/MAUS: Maus.doc (new 68)
• PROBE_SERVER: ToDo.txt (new 68)
• PROBE_WEB/CLIENT: Makefile (+1 -1), ProbeLibrary.manifest (new 3), ToDo.txt (new 36)
• SOURCE_TOOLS/docs: newick_doc.html (new 79)

westram 2006-10-27 11:08 #17 Rev.: 4210

- packed several unused files into .tgz

140 lines of code changed in 34 files:

• GDE/RAxML: Makefile.intel (del), Makefile.pgi (del), example_alignment (del), example_input_tree (del), example_weights (del), examples.exec (del), unused_sources.tgz (new 140)
• GDE/TREEPUZZLE: INSTALL (del), Makefile.am (del), Makefile.in (del), Makefile.org (del), NEWS (del), aclocal.m4 (del), config.log (del), config.status (del), configure (del), configure.in (del), install-sh (del), missing (del), mkinstalldirs (del), unused_source.tgz (new)
• GDE/TREEPUZZLE/data: Makefile (del), Makefile.am (del), Makefile.in (del), marswolf.n (del), primates.b (del)
• GDE/TREEPUZZLE/doc: Makefile (del), Makefile.am (del), Makefile.in (del)
• GDE/TREEPUZZLE/src: Makefile (del), Makefile.am (del), Makefile.in (del), test (del), test.in (del)

westram 2006-10-27 11:07 #16 Rev.: 4209

- removed several dead or generated files

0 lines of code changed in 9 files:

• arb_src_install (del), load (del), log (del), timestamp (del)
• ARBDB: arbdb.icon (del)
• BERGEY: rdp_boot.header (del)
• GDE/PHYML: phyml.dsp (del)
• NAMES: nd.makefile (del)
• PROBE: pd.makefile (del)

westram 2006-10-26 17:43 #15 Rev.: 4208

- finally fixed missing ARB.xs.default

4 lines of code changed in 1 file:

• util: arb_save (+4 -4)

westram 2006-10-26 17:42 #14 Rev.: 4207

- fixed some duplicated targets

5 lines of code changed in 1 file:

• Makefile (+5 -6)

westram 2006-10-26 13:49 #13 Rev.: 4206

- added .xs.default

1 lines of code changed in 1 file:

• util: arb_save (+1 -1)

yadhu 2006-10-26 13:08 #12 Rev.: 4205

FIXES to ProtView module
1. Missing AA sequence terminals for newly loaded marked species - FIXED.
2. Missing AA sequence terminals for newly loaded current species - FIXED.
3. Crashing editor whilst moving newly loaded marked/current species - FIXED.

114 lines of code changed in 3 files:

• EDIT4: ED4_ProteinViewer.cxx (+98 -52), ED4_cursor.cxx (+10), ed4_ProteinViewer.hxx (+6)

westram 2006-10-25 15:23 #11 Rev.: 4204

- fixed indentation

245 lines of code changed in 1 file:

• PRIMER_DESIGN: PRD_SearchFIFO.cxx (+245 -245)

westram 2006-10-24 15:38 #10 Rev.: 4203

- mentioned GLEW

1 lines of code changed in 1 file:

• arb_INSTALL.txt (+1)

westram 2006-10-24 10:54 #9 Rev.: 4202

- added lib/rna3d

1 lines of code changed in 1 file:

• util: arb_save (+1)

westram 2006-10-24 10:47 #8 Rev.: 4201

- removed unused 3D icons

0 lines of code changed in 36 files:

• RNA3D/Attic/OPENGL: GlobalHeader.hxx (del), Globals.hxx (del), Makefile (del), OpenGLGraphics.cxx (del), OpenGLGraphics.hxx (del), Renderer.cxx (del), Renderer.hxx (del), TextureMapping.cxx (del), TextureMapping.hxx (del)
• RNA3D/Attic/data: ECOLI_SECONDARY_STRUCTURE_INFO (del), ECOLI_Tertiary_Interaction.data (del), Ecoli_1M5G_16SrRNA.pdb (del), SecondaryStructureModel_16SrRNA.data (del), TertiaryInteractions_16SrRNA.data (del)
• RNA3D/Attic/images: Circle.png (del), ConeDown.png (del), ConeUp.png (del), Cross.png (del), Danger.png (del), Diamond.png (del), FreeForm_1.png (del), Hexagon.png (del), LetterA.png (del), LetterC.png (del), LetterG.png (del), LetterU.png (del), Letter_A.png (del), Letter_C.png (del), Letter_G.png (del), Letter_U.png (del), Polygon.png (del), Question.png (del), Rectangle.png (del), RectangleRound.png (del), Star.png (del), StarSmooth.png (del)

yadhu 2006-10-18 17:34 #7 Rev.: 4199

BUGS, BUGS Everywhere....finding one by one....
Fixed editor crash when loading from pre-saved configuration settings of ProtView module!

4 lines of code changed in 1 file:

• EDIT4: ED4_ProteinViewer.cxx (+4 -7)

yadhu 2006-10-18 12:25 #6 Rev.: 4198

Fixed editor crash when using "display marked" option!

15 lines of code changed in 1 file:

• EDIT4: ED4_ProteinViewer.cxx (+15 -12)

westram 2006-10-13 16:42 #5 Rev.: 4197

*** empty log message ***

146 lines of code changed in 2 files:

• PERL_SCRIPTS/SPECIES: listMarkedSpecies.pl (new 56), markSpecies.pl (new 90)

westram 2006-10-13 11:19 #4 Rev.: 4196

- mentioned Protein viewer

2 lines of code changed in 1 file:

• arb_CHANGES.txt (+2 -1)

yadhu 2006-10-12 14:53 #3 Rev.: 4195

Now Protein Viewer Module is accessible to all !
Happy ARBing !

1 lines of code changed in 1 file:

• EDIT4: ED4_root.cxx (+1 -2)

westram 2006-10-11 11:33 #2 Rev.: 4194

- removed test code

1 lines of code changed in 1 file:

• SOURCE_TOOLS: grepx.pl (+1 -4)

westram 2006-10-11 11:24 #1 Rev.: 4193

- new option -A: skips uninteresting files in ARB tree

31 lines of code changed in 1 file:

• SOURCE_TOOLS: grepx.pl (+31 -2)

September 2006 »