* partial merge from 'vectorize' into 'trunk'
- reduce failures of {{{TEST_open_socket}}}
* adds: log:branches/vectorize@16586,16592:16594
68 lines of code changed in 1 file:
* partial merge from 'vectorize' into 'trunk'
- eliminates {{{usleep}}} (using {{{nanosleep}}} via {{{ARB_sleep}}})
* adds: log:branches/vectorize@16587:16591
87 lines of code changed in 10 files:
* refuse to compile with gcc 4.6.4
- fails to compile inplace ctors (working with {{{gcc 4.4.3, 4.6.x && x!=4, 4.7++}}})
- compiler detection fails (gcc segfaults when attempting to dump predefined variables). suppress error @ caller.
* link to GccVersionInfo
10 lines of code changed in 1 file:
* painful merge from 'alilink' into 'trunk'
- attempt to eliminate existing conflicts by merging log:branches/alilink@12782,12786:12787 (=creation of conflicting files)
- also merged back already resolved conflicts (done in alilink)
- a dozen of manual merges :-(
* adds: log:branches/alilink@12782,12786:12787,13999,14004
1877 lines of code changed in 11 files:
* mention raxml versions numbers (in help and menus)
5 lines of code changed in 3 files:
* updated
15 lines of code changed in 1 file:
* reintegrates 'io' into 'trunk'
- implements #691
* adds: log:branches/io@16436:16510,16513:16514,16517,16533:16535,16537:16563
1746 lines of code changed in 40 files:
* partial merge from 'io' into 'trunk'
- {{{GB_rename_file}}} -> {{{GB_move_file}}}
- add {{{GB_copy_file}}}
- add safe versions of both
* adds: log:branches/io@16527:16532
169 lines of code changed in 8 files:
* partial merge from 'io' into 'trunk' (fixes to inotifications)
- work with directories
- work with move
- detect file creation
- report reason why inotification triggers (modify,delete,create)
* adds: log:branches/io@16511:16512,16515:16516,16518:16526,16536
362 lines of code changed in 5 files:
* declare some classes/methods final
6 lines of code changed in 3 files:
- add gcc 5.5.0
1 lines of code changed in 1 file:
* reintegrates 'macros' into 'trunk'
- introduce generic input prompt (related #179)
- use it instead of locally generated windows:
* species (rename + create)
* alignment (rename, copy + create)
* experiments (rename, copy + create)
* genes (rename, copy + extract)
* mergetool (rename SAI + configs)
* SAIviz color translation (copy + create)
- fixed bugs in mergetool ([16503],[16504])
* adds: log:branches/macros@16484:16507
636 lines of code changed in 38 files:
- correct indentation
16 lines of code changed in 1 file:
* reintegrates 'textedit' into 'trunk'
- fixes #586
* editor now always started asynchronously
* uses inotify to track file changes
- ~~also use inotify to track directory updates (in order to update file selections when needed)~~\\(./) by [16515] ff.; merged by [16551]
* adds: log:branches/textedit@16448:16468
595 lines of code changed in 41 files: