June 2015 Commit Log

Number of Commits:
45
Number of Active Developers:
1
westram 2015-06-30 11:10 Rev.: 13950


* if marked thresholds was lowered towards zero, groups with '''no''' matches were highlighted
- fixed by using float to calculate match-rate
- related to [13921]

14 lines of code changed in 1 file:

westram 2015-06-30 10:12 Rev.: 13949


- stuff leaks

3 lines of code changed in 2 files:

westram 2015-06-28 12:35 Rev.: 13948


* allow to customize display width of markers

26 lines of code changed in 3 files:

westram 2015-06-28 11:51 Rev.: 13947


* add AUTOMATCH to probe collection

50 lines of code changed in 2 files:

westram 2015-06-28 11:06 Rev.: 13946


* CLEAR did not clear selection list in probe collection edit window

1 lines of code changed in 1 file:

westram 2015-06-28 11:00 Rev.: 13945


* two 'CLEAR'-buttons are not clear :)
* remove safety question when forgetting match results
* toggle order: EDIT, MATCH, FORGET

16 lines of code changed in 3 files:

westram 2015-06-28 10:45 Rev.: 13944


* do not update threshold-limits in case of error
- tried to set them to 0/0, which is illegal
* also avoid illegal limits generally

8 lines of code changed in 1 file:

westram 2015-06-28 09:25 Rev.: 13943


* connect probe match/design with probeSpec
- match a probe or select a designed probe -> copy into probe collection target string
- probe collection target string changes =>
* select in probe collection (if is a member)
* write to probe match target string
- i.e. if probe collection and probe design result is open, both sync to each other if possible

38 lines of code changed in 1 file:

westram 2015-06-28 08:40 Rev.: 13942


* added a MODIFY button (replaces selected probe)
* selecting a probe updates 'Target string' and 'Probe name' (to allow to modify it)
* select new/modified entry
* show some reasons (if probe not added/modified)

178 lines of code changed in 4 files:

westram 2015-06-28 06:46 Rev.: 13941


* select next probe after removing a probe
* stuff some leaks

32 lines of code changed in 1 file:

westram 2015-06-28 06:29 Rev.: 13940


* use same awar for selected probe in both selection lists
* rename last 'PMC' awar

6 lines of code changed in 1 file:

westram 2015-06-28 06:19 Rev.: 13939


* do not touch species marks when matching probe collection

0 lines of code changed in 1 file:

westram 2015-06-28 06:12 Rev.: 13938


* use error instead of abort-flag while matching probe collection
- abort on match-parser errors
* increment progress '''after''' work is done

29 lines of code changed in 3 files:

westram 2015-06-27 19:03 Rev.: 13937


* use plain {{{probe_match_event}}} in probeSpec
- avoids modification of awars owned by probematch-interface (and thus does no longer triggers attached callbacks)

19 lines of code changed in 1 file:

westram 2015-06-27 18:45 Rev.: 13936


* move runtime check against unwanted awar use into {{{probe_match_event}}}

14 lines of code changed in 1 file:

westram 2015-06-27 18:40 Rev.: 13935


* use plain {{{probe_match_event}}} in IUPAC-matcher
- avoids modification of AWAR_TARGET_STRING (and thus does no longer trigger attached callbacks)

10 lines of code changed in 1 file:

westram 2015-06-27 18:30 Rev.: 13934


* no longer use awars in {{{probe_match_event()}}}

116 lines of code changed in 2 files:

westram 2015-06-27 17:24 Rev.: 13932


* add debug code to ensure that a code-section does not use awar reads/writes

18 lines of code changed in 2 files:

westram 2015-06-27 16:12 Rev.: 13931


* eliminate useless {{{AW_window}}}
- stored in {{{AutoMatchSettings}}}
- passed to {{{probe_match_event}}}

16 lines of code changed in 2 files:

westram 2015-06-27 15:54 Rev.: 13930


* disable auto-match from {{{probe_match_with_specificity_event}}}
- avoids useless additional probematches
- avoids assertion failure in progress counter

3 lines of code changed in 1 file:

westram 2015-06-27 12:00 Rev.: 13929


* moves probe_design.hxx -> probe_gui.hxx / probe_local.hxx

59 lines of code changed in 10 files:

westram 2015-06-27 11:46 Rev.: 13928


- add gcc 4.8.5 and 4.9.3

2 lines of code changed in 1 file:

westram 2015-06-12 22:17 Rev.: 13927


* remove wm_set_fill_solid / wm_set_fill_stipple from overides fake object (fixes gcc 4.7++ compilation)

0 lines of code changed in 1 file:

westram 2015-06-12 20:08 Rev.: 13923


* reintegrates '!ProbeMatchCollection' into 'trunk'
- does #479
* adds:
- log:branches/ProbeMatchCollection@13801,13803:13804,13807:13840,13842:13849,13852:13922

4138 lines of code changed in 22 files:

westram 2015-06-12 19:28 Rev.: 13919


* whitespace

27 lines of code changed in 5 files:

westram 2015-06-12 18:38 Rev.: 13914


* renames only: FILLED -> SOLID, tipBoxSize -> TIP_BOX_SIZE

28 lines of code changed in 11 files:

westram 2015-06-12 17:42 Rev.: 13911


- fix clang compile

2 lines of code changed in 1 file:

westram 2015-06-12 16:49 Rev.: 13910


* draw groups (explicitely) shaded
* skip unneeded call to {{{set_grey_level}}} (IRS tree group tipbox)

5 lines of code changed in 2 files:

westram 2015-06-12 16:39 Rev.: 13909


* defines two new fill-styles: SHADED and SHADED_WITH_BORDER
* implement different fill-styles for {{{box}}} and {{{polygon}}}

194 lines of code changed in 7 files:

westram 2015-06-11 16:21 Rev.: 13907


* use {{{AW::FillStyle}}} from clients

49 lines of code changed in 13 files:

westram 2015-06-11 15:22 Rev.: 13905


* replace 'filled'-parameter for box, circle, arc and polygon by smart enum

40 lines of code changed in 5 files:

westram 2015-06-11 14:23 Rev.: 13903


* device interface
- mark {{{xxx_impl}}} OVERRIDE
- "filled_area" -> "polygon" + {{{bool filled}}}
- remove parameter 'filled' from {{{generic_xxx}}}
- eliminate {{{generic_arc}}}, directly call {{{generic_circle}}}
* use {{{polygon(..,true,...)}}} in tree display

46 lines of code changed in 6 files:

westram 2015-06-11 13:07 Rev.: 13901


* fix compilation with gcc 5.10

2 lines of code changed in 1 file:

westram 2015-06-11 10:41 Rev.: 13895


* fix (now) wrong use of {{{set_minmax}}} in {{{gc_minmax_changed_cb}}}

5 lines of code changed in 2 files:

westram 2015-06-11 09:58 Rev.: 13893


* deny calling {{{AW_awar::set_minmax}}} with {{{min==max}}}

5 lines of code changed in 1 file:

westram 2015-06-10 17:51 Rev.: 13892


* move common part of scaler-transformation
- into class AW_ScalerTransformer and
- to a code location where it merges into gtk

85 lines of code changed in 3 files:

westram 2015-06-10 11:43 Rev.: 13889


* ~~ensure limits for GC-content by using set_minmax() after widget has been realized~~
- ~~need to be able to do this for probeSpec-mismatch-threshold-slider (which changes its max. value)~~
- ~~causes stubborn behavior (e.g. after setting minGC to 20, maxGC can no longer be set to 10)~~
(reverted by [13997])

26 lines of code changed in 1 file:

westram 2015-06-09 15:03 Rev.: 13887


* add some example scalers to 'Tree options'

14 lines of code changed in 1 file:

westram 2015-06-09 14:25 Rev.: 13886


* merge [13851] from '!ProbeMatchCollection' into 'trunk'
- implements scaler widget

Note: change to AW_Xm.cxx does belong to [13884] :/

229 lines of code changed in 5 files:

westram 2015-06-09 12:33 Rev.: 13884


* implement simple grey-level for AW_device_Xm:
- supports greylevels 0%,25%,50%,75%,100% (other greylevels get rounded to next supported one)
- (yet) only supported by {{{box()}}}, e.g. in IRS-treeview
- (yet) always draws solid frame around box (as gtk version does)

105 lines of code changed in 4 files:

westram 2015-06-09 09:05 Rev.: 13883


* merge [13850] from '!ProbeMatchCollection' into 'trunk'
- track mean time spent in awar update

32 lines of code changed in 2 files:

westram 2015-06-09 09:01 Rev.: 13882


* merge [13841] from '!ProbeMatchCollection' into 'trunk' (const param)

2 lines of code changed in 2 files:

westram 2015-06-09 08:16 Rev.: 13878


* arb parsimony failed assertion if color groups were used since [13873]

5 lines of code changed in 1 file:

westram 2015-06-08 19:28 Rev.: 13874


* fix treedisp unittest results

1740 lines of code changed in 8 files:

westram 2015-06-08 19:28 Rev.: 13873


* add 6 more probe colors (rainbow colors)
* update color names (=userland reset)
* update help
* Note: fails treedisp unittest

60 lines of code changed in 4 files:

May 2015 »

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