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16 lines of code changed in 2 files:
moved aw_assert from aw_device.hxx to aw_root.hxx
7 lines of code changed in 2 files:
* AW_status.cxx: - if button name starts with ^ it creates a new line
- new flag fixedSizeButtons for aw_message (defaults to true)
30 lines of code changed in 1 file:
for asking questions in a loop
164 lines of code changed in 2 files:
linked WINDOW/aw_question.hxx to INCLUDE directory
1 lines of code changed in 1 file:
removed Experiment menu (it's contained in Gene menu)
4 lines of code changed in 1 file:
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29 lines of code changed in 4 files:
* GEN_map.cxx: - uses GBT_add_data and GBT_write_sequence to create gene-species
- different help files for 'mark organisms' and 'mark gene-species'
- additional mark menu item 'mark all (gene-species/organisms), unmark rest'
- added mark_gene_species_using_current_alignment (plus menuitem)
- menu item to mark all organisms with marked genes
- extract genes to gene-species:
- checks if alignment already exists
- writes acc field
- tests if gene-species exists already
200 lines of code changed in 1 file:
actual -> current
1 lines of code changed in 1 file:
the error that was created during login to default-database is cleared afterwards
15 lines of code changed in 1 file:
outputs path if database entry is missing
38 lines of code changed in 1 file:
* adoptimize.c: - put some assertions into INDEX_DICT_OFFSET and ALPHA_DICT_OFFSET
- fixed a bug in debugging code (test_dictionary)
38 lines of code changed in 1 file:
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1 lines of code changed in 1 file:
skips unneeded lines when creating dependencies
4 lines of code changed in 1 file:
update help for marking gene-species and organisms
168 lines of code changed in 9 files:
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7 lines of code changed in 3 files:
Update of NTREE window for mark/unmark organism + gene-species
129 lines of code changed in 4 files:
added amino count to mod_fields_gc.sellst
16 lines of code changed in 3 files:
now comments are allowed in sellst's
7 lines of code changed in 1 file:
protpars eingebaut
989 lines of code changed in 4 files:
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1 lines of code changed in 1 file:
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73 lines of code changed in 4 files:
added AWAR_GENE_CONTENT
1 lines of code changed in 1 file:
* NT_extern.cxx: - removed Experiment menu (contained in Gene menu)
1 lines of code changed in 1 file:
- when gene menu is created for ARB_NTREE, it contains
the Gene-Species, the Organism and the Experiment menu.
85 lines of code changed in 4 files:
* ED4_text_terminals.cxx: - deleted uninitialized pointer (if consensus was empty)
51 lines of code changed in 1 file:
* ED4_search.cxx: - during auto-jump from searchParamsChanged the cursor awars will not be
updated (there where problems caused with automatic selection of gene-species)
[nevertheless it does not really work - maybe because of auto-center?]
108 lines of code changed in 1 file:
* adtools.c: - GBT_read_gene_sequence can ignore 'complement'
6 lines of code changed in 1 file:
- uses GEN_is_genom_db
19 lines of code changed in 2 files:
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34 lines of code changed in 9 files:
new button for 'init from gene'
10 lines of code changed in 1 file:
- added a aw_input clone accepting a window title
- aw_string_selection sets width to length of 'prompt'
18 lines of code changed in 1 file:
* primer_design.cxx: - init positions and distance from species or gene
- primer lengths corrected on-the-fly
- config manager for primer design
357 lines of code changed in 1 file:
changed helpfile for IRS tree view
9 lines of code changed in 1 file:
create configuration uses selection box with existing configurations
1 lines of code changed in 1 file:
* GEN_interface.cxx: - if combined organism/gene awar changes -> search for pseudo-species or organism and select
* GEN_interface.cxx: - GEN_is_genom_db to test type of database
80 lines of code changed in 1 file:
* GEN_db.cxx: - added GEN_find_pseudo_species
18 lines of code changed in 1 file:
* AWTI_import.cxx: - uses GEN_is_genom_db
11 lines of code changed in 1 file:
minor changes for new s&q field selection
48 lines of code changed in 1 file:
drag with middle-mouse in select mode
1 lines of code changed in 1 file:
changed selection lists for s&q
6 lines of code changed in 1 file:
Secondary Editor Funktionert richtigcd SECEDIT/cd SECEDIT/!
15 lines of code changed in 1 file:
config for WWW window
41 lines of code changed in 2 files:
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12 lines of code changed in 2 files:
- implemented config manager (settings from awars can be saved/restored
to/from properties)
- added config-manager to NDS and Search&Query windows
611 lines of code changed in 16 files:
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34 lines of code changed in 1 file:
help files for all view modes in ARB_NT
92 lines of code changed in 4 files:
modifications for save configuration selection box
235 lines of code changed in 9 files: