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westram
2012-11-27 11:17
#15
Rev.: 9233
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47 lines of code changed in 15 files:
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ARBDB:
ad_load.cxx (+7 -2),
adhash.cxx (+2 -1),
aditem.cxx (+1),
adstring.cxx (+2),
adtree.cxx (+4),
arbdb.cxx (+2)
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CONSENSUS_TREE:
CT_ctree.cxx (+1 -1)
-
CORE:
arb_strarray.cxx (+13 -4),
arb_strarray.h (+1)
-
NTREE:
NT_edconf.cxx (+3)
-
PARSIMONY:
ap_tree_nlen.hxx (+2 -2)
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SL/GUI_ALIVIEW:
AWT_filter.cxx (+2)
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STAT:
ST_ml.cxx (+4)
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TEMPLATES:
smartptr.h (+2 -1)
-
WINDOW:
AW_button.cxx (+1)
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westram
2012-11-27 09:52
#14
Rev.: 9232
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3 lines of code changed in 1 file:
-
westram
2012-11-24 10:24
#13
Rev.: 9228
-
95 lines of code changed in 16 files:
-
ARBDB:
ad_save_load.cxx (+2 -2),
adali.cxx (+1 -1),
adhash.cxx (+40 -48),
adsocket.cxx (+1 -1),
adstring.cxx (+1 -1)
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CONVERTALN:
fconv.cxx (+2 -2),
main.cxx (+3 -3)
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CORE:
arb_string.cxx (+5 -6),
pos_range.cxx (+2 -2)
-
EDIT4:
ED4_objspec.cxx (+8 -8)
-
HELP_SOURCE:
arb_help2xml.cxx (+1 -1)
-
SL/FAST_ALIGNER:
fast_aligner.cxx (+4 -4)
-
SL/LOCATION:
Location.cxx (+15 -22)
-
SL/PRONUC:
iupac.cxx (+2 -2)
-
UNIT_TESTER:
TestEnvironment.cxx (+2 -2),
test_unit.h (+6 -3)
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westram
2012-11-23 18:26
#12
Rev.: 9227
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63 lines of code changed in 14 files:
-
ARBDB:
adfile.cxx (+4 -4),
adhash.cxx (+1 -1),
adsocket.cxx (+4 -4),
adtools.cxx (+1 -1)
-
CONVERTALN:
fconv.cxx (+2 -2),
main.cxx (+3 -3)
-
CORE:
arb_file.cxx (+19 -19),
arb_strarray.cxx (+1 -1),
pos_range.cxx (+12 -12)
-
EDIT4:
ED4_mini_classes.cxx (+1 -1)
-
SL/FAST_ALIGNER:
fast_aligner.cxx (+1 -1)
-
SL/PRONUC:
iupac.cxx (+1 -1)
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TOOLS:
arb_consensus_tree.cxx (+4 -4)
-
WINDOW:
AW_advice.cxx (+9 -9)
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westram
2012-11-23 18:15
#11
Rev.: 9226
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76 lines of code changed in 19 files:
-
AISC_MKPTPS:
mkptypes.cxx (+1 -1)
-
ARBDB:
adGene.cxx (+4 -4),
ad_load.cxx (+2 -2),
ad_save_load.cxx (+6 -6),
adhash.cxx (+2 -2),
adquery.cxx (+18 -18),
adsocket.cxx (+4 -4),
adtree.cxx (+3 -3)
-
CONVERTALN:
date.cxx (+1 -1),
fconv.cxx (+3 -3)
-
DBSERVER:
db_server.cxx (+2 -2)
-
EDIT4:
ED4_objspec.cxx (+5 -5),
ED4_plugins.cxx (+2 -2)
-
SL/PTCLEAN:
ptclean.cxx (+1 -1)
-
SL/REGEXPR:
RegExpr.cxx (+3 -3)
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SL/SEQIO:
seq_export.cxx (+2 -2)
-
TOOLS:
arb_consensus_tree.cxx (+4 -4),
arb_probe.cxx (+1 -1)
-
UNIT_TESTER:
test_unit.h (+12 -12)
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westram
2012-11-23 17:58
#10
Rev.: 9225
-
1501 lines of code changed in 62 files:
-
AISC_MKPTPS:
mkptypes.cxx (+3 -3)
-
ARBDB:
adGene.cxx (+22 -22),
ad_config.cxx (+3 -3),
ad_load.cxx (+8 -8),
ad_save_load.cxx (+52 -52),
adali.cxx (+7 -7),
adfile.cxx (+34 -34),
adhash.cxx (+54 -54),
adquery.cxx (+106 -106),
adseqcompr.cxx (+7 -7),
adsocket.cxx (+43 -43),
adstring.cxx (+16 -16),
adtcp.cxx (+5 -5),
adtools.cxx (+5 -5),
adtree.cxx (+83 -83),
arbdb.cxx (+11 -11)
-
AWT:
AWT_hexdump.cxx (+2 -2)
-
AWTC:
AWTC_next_neighbours.cxx (+27 -27)
-
CONSENSUS_TREE:
CT_part.cxx (+17 -17)
-
CONVERTALN:
date.cxx (+67 -67),
embl.cxx (+7 -7),
fconv.cxx (+16 -16),
main.cxx (+14 -14)
-
CORE:
FileContent.cxx (+8 -8),
arb_file.cxx (+47 -47),
arb_strarray.cxx (+61 -61),
arb_string.cxx (+68 -68),
pos_range.cxx (+84 -84)
-
DBSERVER:
db_server.cxx (+19 -19)
-
EDIT4:
ED4_block.cxx (+59 -59),
ED4_cursor.cxx (+1 -1),
ED4_mini_classes.cxx (+9 -9),
ED4_objspec.cxx (+17 -17),
ED4_plugins.cxx (+4 -4),
ED4_root.cxx (+28 -28)
-
HELP_SOURCE:
arb_help2xml.cxx (+2 -2)
-
MERGE:
MG_adapt_ali.cxx (+4 -4)
-
MULTI_PROBE:
MP_Window.cxx (+14 -14),
MP_noclass.cxx (+2 -2)
-
NTREE:
ad_spec.cxx (+9 -9)
-
PROBE:
PT_buildtree.cxx (+2 -2)
-
SERVERCNTRL:
servercntrl.cxx (+1 -1)
-
SL/DB_QUERY:
db_query.cxx (+5 -5)
-
SL/FAST_ALIGNER:
fast_aligner.cxx (+85 -85),
seq_search.cxx (+11 -11)
-
SL/FILTER:
RangeList.cxx (+30 -30)
-
SL/LOCATION:
Location.cxx (+61 -61)
-
SL/PRONUC:
iupac.cxx (+14 -14)
-
SL/PTCLEAN:
ptclean.cxx (+5 -5)
-
SL/REGEXPR:
RegExpr.cxx (+7 -7)
-
SL/SEQIO:
seq_export.cxx (+7 -7)
-
SL/TREEDISP:
TreeDisplay.cxx (+4 -4)
-
TOOLS:
arb_consensus_tree.cxx (+36 -36),
arb_probe.cxx (+32 -32),
arb_test.cxx (+26 -26)
-
UNIT_TESTER:
TestEnvironment.cxx (+11 -11),
UnitTester.cxx (+3 -3),
test_unit.h (+71 -71)
-
WINDOW:
AW_advice.cxx (+16 -16),
AW_file_selection.cxx (+11 -11),
AW_macro.cxx (+8 -8),
AW_nawar.cxx (+10 -10)
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westram
2012-11-23 17:47
#9
Rev.: 9224
-
79 lines of code changed in 22 files:
-
AISC_MKPTPS:
mkptypes.cxx (+1 -1)
-
ARBDB:
adGene.cxx (+5 -5),
ad_load.cxx (+2 -2),
ad_save_load.cxx (+6 -6),
adhash.cxx (+2 -2),
adquery.cxx (+8 -8),
adsocket.cxx (+4 -4),
adtree.cxx (+3 -3)
-
CONVERTALN:
date.cxx (+1 -1),
fconv.cxx (+3 -3)
-
CORE:
pos_range.cxx (+6 -6)
-
DBSERVER:
db_server.cxx (+2 -2)
-
EDIT4:
ED4_objspec.cxx (+6 -6),
ED4_plugins.cxx (+4 -4)
-
SL/PTCLEAN:
ptclean.cxx (+1 -1)
-
SL/REGEXPR:
RegExpr.cxx (+4 -4)
-
SL/SEQIO:
seq_export.cxx (+2 -2)
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TOOLS:
arb_consensus_tree.cxx (+4 -4),
arb_probe.cxx (+1 -1)
-
UNIT_TESTER:
TestEnvironment.cxx (+2 -2),
UnitTester.cxx (+1 -1),
test_unit.h (+11 -14)
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westram
2012-11-23 15:43
#8
Rev.: 9223
-
111 lines of code changed in 10 files:
-
ARBDB:
adseqcompr.cxx (+7 -7)
-
CORE:
FileContent.cxx (+1 -1),
arb_string.cxx (+46 -46)
-
EDIT4:
ED4_block.cxx (+4 -4),
ED4_root.cxx (+5 -5)
-
SL/FAST_ALIGNER:
ClustalV.cxx (+1 -1)
-
TOOLS:
arb_probe.cxx (+2 -2),
command_output.h (+6 -6)
-
UNIT_TESTER:
test_unit.h (+38 -38)
-
WINDOW:
AW_macro.cxx (+1 -1)
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westram
2012-11-23 15:09
#7
Rev.: 9222
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118 lines of code changed in 10 files:
-
ARBDB:
adstring.cxx (+14)
-
CORE:
arb_core.h (+1 -1),
arb_signal.cxx (+27 -32),
arb_signal.h (+1 -1),
arb_string.cxx (+6 -6)
-
EDIT4:
ED4_root.cxx (+4 -4)
-
TOOLS:
arb_probe.cxx (+1 -1)
-
UNIT_TESTER:
Makefile.suite (+3 -3),
TestEnvironment.cxx (+24 -4),
test_unit.h (+37 -25)
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westram
2012-11-17 17:45
#6
Rev.: 9197
-
192 lines of code changed in 18 files:
-
ARBDB:
Makefile (+1),
ad_prot.h (-1),
adseqcompr.cxx (+1),
adstring.cxx (-23)
-
CORE:
Makefile (+10),
arb_handlers.cxx (+22 -9),
arb_misc.cxx (new 63),
arb_misc.h (new 25)
-
PARSIMONY:
Makefile (+1),
PARS_main.cxx (+1)
-
PROBE:
Makefile (+2),
PT_buildtree.cxx (+1),
PT_debug.cxx (+3),
PT_io.cxx (+29 -1),
PT_main.cxx (+27 -3),
probe.h (+5),
probe_tree.h (-1)
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SOURCE_TOOLS:
generate_all_links.sh (+1)
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westram
2012-11-16 16:35
#5
Rev.: 9182
-
0 lines of code changed in 4 files:
-
EDIT4:
ED4_naligner.cxx (changed),
ED4_plugins.cxx (changed),
ed4_naligner.hxx (changed),
ed4_plugins.hxx (changed)
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westram
2012-11-15 16:41
#4
Rev.: 9172
-
1 lines of code changed in 5 files:
-
Makefile (+1 -1)
-
EDIT4:
ED4_naligner.cxx (changed),
ED4_plugins.cxx (changed),
ed4_naligner.hxx (changed),
ed4_plugins.hxx (changed)
-
westram
2012-11-15 16:12
#3
Rev.: 9170
-
13 lines of code changed in 4 files:
-
Makefile (+4 -2)
-
AWTI:
AWTI_import.cxx (+1)
-
GDEHELP:
Makefile (+8 -2)
-
SL/TREE_READ:
TreeRead.cxx (changed)
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westram
2012-11-15 10:55
#2
Rev.: 9162
-
73 lines of code changed in 4 files:
-
HELP_SOURCE/oldhelp:
namesadmin.hlp (+13),
sp_rename.hlp (+4 -4)
-
SL/AW_NAME:
AW_names_admin.cxx (+55 -36),
Makefile (+1)
-
epruesse
2012-11-06 22:15
#1
Rev.: 9120
-
2 lines of code changed in 1 file:
-
CORE:
arb_msg.cxx (+2 -1)