December 2003 Commit Log

Number of Commits:
88
Number of Active Developers:
4
spanfeln 2003-12-30 17:21 Rev.: 2308

Wiederherstellung verlorener Programmteile

73 lines of code changed in 3 files:

yadhu 2003-12-23 16:03 Rev.: 2307

Feature to import xml format trees!!

325 lines of code changed in 4 files:

yadhu 2003-12-23 16:01 Rev.: 2306

visualization of SAIs in Probe Match Results !!

500 lines of code changed in 16 files:

westram 2003-12-18 14:11 Rev.: 2305

- removed PERL directory
- GDEHELP is not included completely (only ARB_GDEmenus and DATA_FILES)
- excluded files/dirs starting with .
- excluded files starting with # and 'ChangeLog'

5 lines of code changed in 1 file:

westram 2003-12-18 14:06 Rev.: 2304

- more messages

22 lines of code changed in 1 file:

westram 2003-12-18 14:03 Rev.: 2303

- target for bin/Makefile depends on setting of DEBUG
- cosmetics

11 lines of code changed in 1 file:

westram 2003-12-18 14:02 Rev.: 2302

hide ARB.pm

1 lines of code changed in 1 file:

westram 2003-12-18 14:01 Rev.: 2301

- create links to SOURCE_TOOLS only in DEBUG mode
Otherwise they get into the release as broken links.

12 lines of code changed in 1 file:

westram 2003-12-18 14:00 Rev.: 2300

- added XS interface for GB_find (because mode needs translation)

14 lines of code changed in 1 file:

westram 2003-12-18 13:59 Rev.: 2299

added positions for two more buttons

24 lines of code changed in 1 file:

westram 2003-12-18 13:58 Rev.: 2298

- changed button text in 'reorder fields' window
- added 2 buttons for up/down movement
- added ad_list_reorder_cb2()
- cosmetics

94 lines of code changed in 1 file:

westram 2003-12-18 13:58 Rev.: 2297

updated deps

11 lines of code changed in 4 files:

westram 2003-12-18 13:55 Rev.: 2296

- fixed bug introduced by Gene-PT-Server IDP
(selecting result from Gene-Search didn't select gene)

4 lines of code changed in 1 file:

westram 2003-12-18 13:54 Rev.: 2295

all code moved to ARBDB

0 lines of code changed in 1 file:

westram 2003-12-18 13:53 Rev.: 2294

- cleanup

0 lines of code changed in 1 file:

westram 2003-12-18 13:52 Rev.: 2293

- added GEN_find_organism

3 lines of code changed in 1 file:

westram 2003-12-18 13:49 Rev.: 2292

- moved some functions here (used by IDP)

75 lines of code changed in 1 file:

westram 2003-12-18 13:48 Rev.: 2291

removed unused file

0 lines of code changed in 1 file:

westram 2003-12-18 13:44 Rev.: 2290

- perl script to import proteomdata

288 lines of code changed in 2 files:

westram 2003-12-18 13:44 Rev.: 2289

removed old, broken useless scripts

0 lines of code changed in 4 files:

westram 2003-12-16 10:04 Rev.: 2288

- uses SQ_reset_counters

2 lines of code changed in 1 file:

westram 2003-12-16 10:03 Rev.: 2287

- removed SQ_count_nr_of_groups()
- added SQ_reset_counters()

3 lines of code changed in 1 file:

westram 2003-12-16 10:02 Rev.: 2286

- fixed SQ_count_nr_of_groups
- added SQ_reset_counters()

16 lines of code changed in 1 file:

huberj 2003-12-13 14:26 Rev.: 2285

*** empty log message ***

20 lines of code changed in 3 files:

spanfeln 2003-12-12 18:56 Rev.: 2284

*** empty log message ***

4 lines of code changed in 1 file:

westram 2003-12-12 14:22 Rev.: 2283

perl script to convert '-' to '.' at sequence ends

102 lines of code changed in 1 file:

westram 2003-12-12 14:15 Rev.: 2282

- NT_show_message displays mutltiple messages

15 lines of code changed in 1 file:

westram 2003-12-12 14:14 Rev.: 2281

- GBT_message stores multiple incoming messages by appending them
separated by \n

10 lines of code changed in 1 file:

westram 2003-12-11 15:37 Rev.: 2280

- finally excluded names.dat

2 lines of code changed in 1 file:

westram 2003-12-11 15:04 Rev.: 2279

- checks whether lynx dumps are non-empty

1 lines of code changed in 1 file:

westram 2003-12-11 15:04 Rev.: 2278

- mentioned lynx

1 lines of code changed in 1 file:

westram 2003-12-11 12:57 Rev.: 2277

- exclude names.dat

1 lines of code changed in 1 file:

westram 2003-12-11 12:49 Rev.: 2276

writes file.lst

1 lines of code changed in 1 file:

westram 2003-12-11 11:02 Rev.: 2275

- wraps GEN_* functions into P2AT_ "namespace"
- rewrote prototype parsing (depended too much on ad_prot layout)

99 lines of code changed in 1 file:

westram 2003-12-11 11:02 Rev.: 2274

- minor fixes for changed function names

16 lines of code changed in 1 file:

westram 2003-12-11 11:01 Rev.: 2273

spelling fix

20 lines of code changed in 1 file:

westram 2003-12-11 11:01 Rev.: 2272

- uses demo.arb if no ARB is running

58 lines of code changed in 1 file:

westram 2003-12-11 11:01 Rev.: 2271

- includes adGene.h

3 lines of code changed in 1 file:

westram 2003-12-11 11:00 Rev.: 2270

- edited stub doc

6 lines of code changed in 1 file:

westram 2003-12-11 10:57 Rev.: 2269

updated

0 lines of code changed in 1 file:

westram 2003-12-11 10:57 Rev.: 2268

- added GEN_first_marked_gene and GEN_next_marked_gene
- fixed file header
- C++ comments -> C comments
- removed some duplicated prototypes

28 lines of code changed in 1 file:

westram 2003-12-11 10:57 Rev.: 2267

- moved some functions to adGene.c

0 lines of code changed in 1 file:

westram 2003-12-11 10:57 Rev.: 2266

- moved some functions here (used by IDP)

38 lines of code changed in 1 file:

westram 2003-12-11 10:55 Rev.: 2265

- include adGene.h into perl interface
- removed deprecated include path to local perl

4 lines of code changed in 1 file:

huberj 2003-12-09 13:56 Rev.: 2264

*** empty log message ***

100 lines of code changed in 4 files:

westram 2003-12-03 18:37 Rev.: 2263

- removed doc generation (doc is picked up by GDEHELP Makefile)

3 lines of code changed in 1 file:

westram 2003-12-03 18:31 Rev.: 2262

*** empty log message ***

15 lines of code changed in 1 file:

westram 2003-12-03 18:31 Rev.: 2261

- use ./

1 lines of code changed in 1 file:

westram 2003-12-03 18:30 Rev.: 2260

- use ./ for scripts

5 lines of code changed in 1 file:

westram 2003-12-03 18:26 Rev.: 2259

show tgz when done

2 lines of code changed in 1 file:

westram 2003-12-03 18:26 Rev.: 2258

unused

0 lines of code changed in 1 file:

westram 2003-12-03 18:26 Rev.: 2257

- added -w

1 lines of code changed in 1 file:

westram 2003-12-03 18:25 Rev.: 2256

- text appended to generated agde.hlp

8 lines of code changed in 1 file:

westram 2003-12-03 18:25 Rev.: 2255

- converts doc files from external tools to fit into ARB help
(they have to be prepared inside $ARBHOME/GDEHELP)

22 lines of code changed in 1 file:

westram 2003-12-03 18:24 Rev.: 2254

- many changes to run tasks in seperate directories
- removed deprecated stuff

52 lines of code changed in 9 files:

westram 2003-12-03 18:23 Rev.: 2253

removed deprecated menus

0 lines of code changed in 5 files:

westram 2003-12-03 18:22 Rev.: 2252

- added HELP_GEN, HELP_DOC_GEN and helpfiles.lst

3 lines of code changed in 1 file:

westram 2003-12-03 18:22 Rev.: 2251

- creates a list of all help files used in GDE menus
- calls Makefile.helpfiles to build these docs (or print an error)

21 lines of code changed in 1 file:

westram 2003-12-03 18:21 Rev.: 2250

files and Makefile for generation of ARB help from docs of external tools

157 lines of code changed in 4 files:

westram 2003-12-03 18:20 Rev.: 2249

- added GOTO_LOCAL_DIR and RM_LOCAL_DIR to run tasks in
seperate directories which allows running tree programms
parallel (used by GEN_INFILE and RM_LOCAL_FILES)
- removed deprecated blast menus, protein.menu, dna_rna.menu, seq_management.menu

9 lines of code changed in 1 file:

westram 2003-12-03 18:18 Rev.: 2248

cap help

161 lines of code changed in 1 file:

westram 2003-12-03 18:17 Rev.: 2247

removed old help files

0 lines of code changed in 24 files:

westram 2003-12-03 17:48 Rev.: 2246

fixed perl path
added -w

9 lines of code changed in 5 files:

westram 2003-12-03 17:11 Rev.: 2245

new filters from jack

284 lines of code changed in 3 files:

westram 2003-12-03 17:10 Rev.: 2244

- changes from jack

131 lines of code changed in 3 files:

westram 2003-12-03 17:10 Rev.: 2243

removed generated file

0 lines of code changed in 1 file:

westram 2003-12-03 17:09 Rev.: 2242

- added AWAR_TREE_REFRESH

1 lines of code changed in 1 file:

westram 2003-12-03 17:08 Rev.: 2241

- added "AWAR_REMOTE_TOUCH" to check_for_remote_command
- added printouts for debugging

26 lines of code changed in 1 file:

westram 2003-12-03 16:41 Rev.: 2240

- minor changes to template code

9 lines of code changed in 1 file:

westram 2003-12-03 16:40 Rev.: 2239

- fixed mostly cosmetic diffs to latest READSEQ release

52 lines of code changed in 1 file:

westram 2003-12-03 16:39 Rev.: 2238

- fixed NEXUS format export (missing,gap,interleave)
- fixed mostly cosmetic diffs to latest READSEQ release

7 lines of code changed in 1 file:

westram 2003-12-03 16:37 Rev.: 2237

- warning fix

1 lines of code changed in 1 file:

westram 2003-12-03 16:28 Rev.: 2236

- added NT_recompute_cb to AWAR_COLOR_GROUPS_USE

2 lines of code changed in 1 file:

westram 2003-12-03 16:27 Rev.: 2235

- cosmetics

13 lines of code changed in 1 file:

westram 2003-12-03 16:26 Rev.: 2234

- added version info to command line help output
- better handling of illegal cmd line arguments

64 lines of code changed in 1 file:

westram 2003-12-03 16:26 Rev.: 2233

- tree refresh bound to AWAR_COLOR_GROUPS_USE and AWAR_DTREE_REFRESH
(if some function should refresh the tree, simply touch AWAR_DTREE_REFRESH)
- changed order in export menu

3 lines of code changed in 1 file:

westram 2003-12-03 16:26 Rev.: 2232

- fixed generation of nt_date.h
- nt_date.h got new define DATE_YEAR

11 lines of code changed in 1 file:

westram 2003-12-03 16:22 Rev.: 2231

- removed deprecated sources HGL_SRC and LOOPTOOL from build

4 lines of code changed in 1 file:

westram 2003-12-03 16:21 Rev.: 2230

- added AWAR_DTREE_REFRESH

7 lines of code changed in 1 file:

westram 2003-12-03 16:21 Rev.: 2229

- creates AWAR_DTREE_REFRESH

2 lines of code changed in 1 file:

westram 2003-12-03 16:20 Rev.: 2228

- added NT_recompute_cb

8 lines of code changed in 2 files:

westram 2003-12-03 16:18 Rev.: 2227

- added AWT_is_file

7 lines of code changed in 2 files:

westram 2003-12-03 16:17 Rev.: 2226

- uses normal ARB help system

9 lines of code changed in 1 file:

westram 2003-12-03 16:15 Rev.: 2225

updated

1 lines of code changed in 1 file:

westram 2003-12-03 16:15 Rev.: 2224

- rewrote remote command functions
to remove duplicated code and oversized stack arrays
- added GBT_remote_touch_awar()

103 lines of code changed in 1 file:

westram 2003-12-03 16:01 Rev.: 2223

- inserted many dependencies (multiple targets build straight after 'realclean')

39 lines of code changed in 1 file:

huberj 2003-12-03 13:46 Rev.: 2222

*** empty log message ***

5 lines of code changed in 2 files:

huberj 2003-12-02 14:35 Rev.: 2221

*** empty log message ***

27 lines of code changed in 3 files:

November 2003 »

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