September 2007 Commit Log

Number of Commits:
118
Number of Active Developers:
3
boehnel 2007-09-28 21:01 Rev.: 4873

changing some 'int' to 'long long' due to overflow by multiplication (discovered with -ftrapv)

3 lines of code changed in 1 file:

westram 2007-09-27 14:21 Rev.: 4872

- shadow fixes

17 lines of code changed in 4 files:

westram 2007-09-27 14:21 Rev.: 4871

- shadow fixes
- cleanup

66 lines of code changed in 1 file:

westram 2007-09-27 13:57 Rev.: 4870

- shadow fixes

154 lines of code changed in 4 files:

westram 2007-09-27 12:51 Rev.: 4869

- fix later

1 lines of code changed in 1 file:

westram 2007-09-27 12:51 Rev.: 4868

- added POST_COMPILE where needed

16 lines of code changed in 9 files:

westram 2007-09-27 12:50 Rev.: 4867

- POST_COMPILER (filters out gcc shadow spam about
shadowing things in /usr/include or built-in stuff)

122 lines of code changed in 1 file:

westram 2007-09-27 12:50 Rev.: 4866

- added -Wshadow + POST_COMPILER in DEBUG mode
- disabled g++ message wrapping

6 lines of code changed in 1 file:

westram 2007-09-27 12:50 Rev.: 4865

- shadow warning fix

13 lines of code changed in 3 files:

westram 2007-09-27 12:49 Rev.: 4864

- fixed old-style typedef (which does not allow forward-decls)

2 lines of code changed in 1 file:

westram 2007-09-24 13:28 Rev.: 4863

- set renamed==true when exporting to new DB

4 lines of code changed in 1 file:

westram 2007-09-24 13:28 Rev.: 4862

- fixed memory corruption in remove_leafs()
- fixed bug in remove_leafs (when son of tree-root was deleted)
- count and announce removed groups
- show tree in status, while modifying it

46 lines of code changed in 1 file:

westram 2007-09-24 13:28 Rev.: 4861

- fixed comment formatting of read_tree_and_size_internal()
- added assertion

16 lines of code changed in 1 file:

westram 2007-09-20 12:36 Rev.: 4860

- pseudo-modified to get rid of executable-flag

10 lines of code changed in 6 files:

baderk 2007-09-20 10:51 Rev.: 4859

Fixed missing dependencies on Debian-based systems (Ubuntu) -> added Xm/Xm.h

5 lines of code changed in 1 file:

westram 2007-09-19 16:23 Rev.: 4858

- fixed a crash, occurring when changing helix-field
while cursor is in non-'data'-terminal

2 lines of code changed in 1 file:

westram 2007-09-19 15:44 Rev.: 4857

- warnings fixed

37 lines of code changed in 3 files:

westram 2007-09-19 15:44 Rev.: 4856

- NDEBUG fix

9 lines of code changed in 1 file:

westram 2007-09-19 15:13 Rev.: 4855

- depends updated

429 lines of code changed in 29 files:

westram 2007-09-19 15:12 Rev.: 4854

- updated

7 lines of code changed in 1 file:

westram 2007-09-19 15:09 Rev.: 4853

- cleanup

0 lines of code changed in 1 file:

westram 2007-09-19 15:08 Rev.: 4852

- added include wrapper

19 lines of code changed in 1 file:

westram 2007-09-19 15:08 Rev.: 4851

- fixed include wrapper

5 lines of code changed in 1 file:

westram 2007-09-19 15:08 Rev.: 4850

- removed warning

2 lines of code changed in 1 file:

westram 2007-09-19 15:08 Rev.: 4849

- fixed arbdbt.h wrapper

2 lines of code changed in 2 files:

westram 2007-09-19 15:07 Rev.: 4848

- includes fixed

2 lines of code changed in 7 files:

westram 2007-09-19 15:06 Rev.: 4847

- refers to bugs.arb-home.de

7 lines of code changed in 1 file:

westram 2007-09-19 15:06 Rev.: 4846

- fixed target 'realclean'

6 lines of code changed in 1 file:

westram 2007-09-19 15:05 Rev.: 4845

- cosmetics

3 lines of code changed in 1 file:

westram 2007-09-19 15:05 Rev.: 4844

- added target '3d'
- added 'valgrind_update'
- 'clean' cleans bin
- added 'save2' (save non-strict for manual backup)

12 lines of code changed in 1 file:

westram 2007-09-19 15:05 Rev.: 4843

- const fixes

3 lines of code changed in 1 file:

westram 2007-09-19 15:04 Rev.: 4842

- const+virtualfixes
- cleanup

24 lines of code changed in 1 file:

westram 2007-09-19 15:04 Rev.: 4841

- callback fixes
- cosmetics

8 lines of code changed in 1 file:

westram 2007-09-19 15:04 Rev.: 4840

- replaced parameter name 'use' by 'aliname'
- cosmetics + assertions

55 lines of code changed in 1 file:

westram 2007-09-19 15:03 Rev.: 4839

- cosmetics
- added assert_or_exit()
- avoid assertions in release

20 lines of code changed in 1 file:

westram 2007-09-19 15:03 Rev.: 4838

- include arbdb.h
- fixed include wrapper

10 lines of code changed in 1 file:

westram 2007-09-19 15:03 Rev.: 4837

- include stdio.h

1 lines of code changed in 1 file:

westram 2007-09-19 15:02 Rev.: 4836

- assertions

3 lines of code changed in 1 file:

westram 2007-09-19 15:02 Rev.: 4835

- use set_offset()

2 lines of code changed in 1 file:

westram 2007-09-19 15:00 Rev.: 4834

- error-cosmetics

24 lines of code changed in 1 file:

westram 2007-09-19 15:00 Rev.: 4833

- avoid aw_assert double def

3 lines of code changed in 1 file:

westram 2007-09-19 15:00 Rev.: 4832

- include aw_root.hxx

5 lines of code changed in 1 file:

westram 2007-09-19 15:00 Rev.: 4831

- comments

2 lines of code changed in 1 file:

westram 2007-09-19 15:00 Rev.: 4830

- replaced macros by inline-member

64 lines of code changed in 1 file:

westram 2007-09-19 14:59 Rev.: 4829

- protected->private
- added dot() - replaces macros used before

18 lines of code changed in 1 file:

westram 2007-09-19 14:59 Rev.: 4828

- skip black and white in grey-levels of color-chooser.
They are already present above.
- new way to specify default color: '${GC-name}'
uses default of previously defined GC

42 lines of code changed in 1 file:

westram 2007-09-19 14:58 Rev.: 4827

- skip CVS relicts
- may ignore unknown files (for manual backups)

26 lines of code changed in 1 file:

westram 2007-09-19 14:58 Rev.: 4826

- 'make save2'-hint

2 lines of code changed in 1 file:

westram 2007-09-19 14:58 Rev.: 4825

- use targets instead of links

54 lines of code changed in 1 file:

westram 2007-09-19 14:58 Rev.: 4824

- added target 'valgrind_update'

3 lines of code changed in 1 file:

westram 2007-09-19 14:57 Rev.: 4823

- fixed includes

16 lines of code changed in 3 files:

westram 2007-09-19 14:57 Rev.: 4822

- cleanup
- fixed includes

18 lines of code changed in 1 file:

westram 2007-09-19 14:56 Rev.: 4821

- fixed class RNA3D_Graphics
- typo

5 lines of code changed in 1 file:

westram 2007-09-19 14:56 Rev.: 4820

- forward declarations
- removed global gb_main

4 lines of code changed in 1 file:

westram 2007-09-19 14:56 Rev.: 4819

- forward declarations

3 lines of code changed in 1 file:

westram 2007-09-19 14:55 Rev.: 4818

- removed nearly all includes from here.
"Let's include it all"-headers really suck!

2 lines of code changed in 1 file:

westram 2007-09-19 14:54 Rev.: 4817

*** empty log message ***

31 lines of code changed in 1 file:

westram 2007-09-19 14:54 Rev.: 4816

- secedit keyboard shortcuts

42 lines of code changed in 1 file:

westram 2007-09-19 14:54 Rev.: 4815

- describe missing modes

38 lines of code changed in 1 file:

westram 2007-09-19 14:54 Rev.: 4814

- changed default bone description

5 lines of code changed in 1 file:

westram 2007-09-19 14:53 Rev.: 4813

- helixNr now stored as string (not int)
jump to helix '19a' working

5 lines of code changed in 1 file:

westram 2007-09-19 14:52 Rev.: 4812

- several new options

33 lines of code changed in 1 file:

westram 2007-09-19 14:52 Rev.: 4811

- only define x-positions, y calculated now

5 lines of code changed in 1 file:

westram 2007-09-19 14:51 Rev.: 4810

- added ed4_extern.hxx, secedit_extern.hxx, aw_position.hxx
- removed sec_graphic.hxx, secedit.hxx
- cleanup

3 lines of code changed in 1 file:

westram 2007-09-19 14:51 Rev.: 4809

- getSaiColorString() went to ed4_extern.hxx

0 lines of code changed in 1 file:

westram 2007-09-19 14:50 Rev.: 4808

- moved GCs to ed4_extern.hxx

11 lines of code changed in 1 file:

westram 2007-09-19 14:50 Rev.: 4807

- interface for external modules (currently: SECEDIT/RNA3D)

107 lines of code changed in 1 file:

westram 2007-09-19 14:49 Rev.: 4806

- added translation tables 'helix' and 'gaps'
- renamed getSaiColorString->ED4_getSaiColorString
- added ED4_SAIs_visualized()

12 lines of code changed in 1 file:

westram 2007-09-19 14:49 Rev.: 4805

- use secedit_extern.hxx instead of internal SECEDIT headers
- pass gb_main to SECEDIT

3 lines of code changed in 1 file:

westram 2007-09-19 14:48 Rev.: 4804

- trigger ED4_AWAR_SEARCH_RESULT_CHANGED
- added ED4_buildColorString()
- const fixes

12 lines of code changed in 1 file:

westram 2007-09-19 14:48 Rev.: 4803

- rewrote SECEDIT

6968 lines of code changed in 28 files:

westram 2007-09-19 14:45 Rev.: 4802

- fixed AW_device-calls

10 lines of code changed in 2 files:

westram 2007-09-19 14:45 Rev.: 4801

- fix changed AW_device calls

47 lines of code changed in 3 files:

westram 2007-09-19 14:44 Rev.: 4800

- includes fixed
- AW_device fixes

4 lines of code changed in 1 file:

westram 2007-09-19 14:43 Rev.: 4799

- new parameter for registerFont (to register only some characters)

17 lines of code changed in 1 file:

westram 2007-09-19 14:42 Rev.: 4798

- bugfix: store AW_font_limits instead of AW_font_information*
they've been overwritten internally leading to wrong results
- allow to register a character subset only

8 lines of code changed in 1 file:

westram 2007-09-19 14:41 Rev.: 4797

- fixed include wrappers
- changed BI_helix-access
- cosmetics

28 lines of code changed in 1 file:

westram 2007-09-19 14:41 Rev.: 4796

- fixed include wrapper
- forward declaration of BI_ecoli_ref
- FindTypeOfRNA() made static
- added Structure3D::gb_main

25 lines of code changed in 1 file:

westram 2007-09-19 14:41 Rev.: 4795

- fixed includes
- added Structure3D::gb_main
- dont use ED4_sequence_terminal directly, instead use interface function
- fixed BI_ecoli_ref-calls

29 lines of code changed in 1 file:

westram 2007-09-19 14:40 Rev.: 4794

- fixed BI_ecoli_ref-call
- fixed includes

7 lines of code changed in 1 file:

westram 2007-09-19 14:40 Rev.: 4793

- forward declare BI_ecoli_ref instead of using void*

4 lines of code changed in 1 file:

westram 2007-09-19 14:40 Rev.: 4792

- fixed BI_ecoli_ref-calls

5 lines of code changed in 1 file:

westram 2007-09-19 14:39 Rev.: 4791

- fixed BI_helix access

4 lines of code changed in 1 file:

westram 2007-09-19 14:39 Rev.: 4790

- fix changed AW_device calls
- fix changed BI_helix calls

27 lines of code changed in 1 file:

westram 2007-09-19 14:38 Rev.: 4789

- added ED4_remote_event(); used to inject keystroked from SECEDIT
- replace helix-search-code by call to BI_helix-method

24 lines of code changed in 1 file:

westram 2007-09-19 14:38 Rev.: 4788

- fix changed BI_helix calls
- protstruct-warning debug-only

6 lines of code changed in 1 file:

westram 2007-09-19 14:38 Rev.: 4787

- fix changed BI_helix calls
- changed cursor logic (when editing reverse, increase cursor position
at start of edit-command, decrease afterwards)

14 lines of code changed in 1 file:

westram 2007-09-19 14:38 Rev.: 4786

- fix changed BI_ecoli_ref + BI_helix calls
- logic of reverse cursor changed (before it was drawn backwards, now it is
drawn behind current position)
- added ED4_get_base_position() - used by SECEDIT

34 lines of code changed in 1 file:

westram 2007-09-19 14:37 Rev.: 4785

- forward declare BI_helix

2 lines of code changed in 1 file:

westram 2007-09-19 14:37 Rev.: 4784

- fixed changed BI_helix access

9 lines of code changed in 3 files:

westram 2007-09-19 14:36 Rev.: 4783

- removed unneeded dependency from BI_helix.hxx

0 lines of code changed in 1 file:

westram 2007-09-19 14:35 Rev.: 4782

- fixed BI_helix-access
- replaced stupid variable name 'THIS'

22 lines of code changed in 1 file:

westram 2007-09-19 14:35 Rev.: 4781

- fixed BI_helix-access

2 lines of code changed in 1 file:

westram 2007-09-19 14:35 Rev.: 4780

- replaced sick allocation strategy by a straight-forward one
- improved error-handling
- implemented new BI_helix-methods
- simplyfied BI_ecoli_ref methods

167 lines of code changed in 1 file:

westram 2007-09-19 14:34 Rev.: 4779

- fixed includes
- declare BI_helix_entry global (not class-local)
- public member variables of BI_helix now private
- added new methods (first/next_pair_position, first/last_position)
- fixed non-std variable names (starting with '_')
- simplyfied BI_ecoli_ref (removed 2nd abs-array)

75 lines of code changed in 1 file:

westram 2007-09-19 14:33 Rev.: 4778

- fixed command()

17 lines of code changed in 5 files:

westram 2007-09-19 14:31 Rev.: 4777

- fixed command()
- dont call AWT_graphic::check_update

2 lines of code changed in 1 file:

westram 2007-09-19 14:31 Rev.: 4776

- forward AW_key_code to command()

1 lines of code changed in 1 file:

westram 2007-09-19 14:29 Rev.: 4775

- RNA3D_Graphics now derived from AWT_nonDB_graphic
- removed usedless command()

5 lines of code changed in 1 file:

westram 2007-09-19 14:29 Rev.: 4774

- fixed command()
- fixed AW_device-calls

5 lines of code changed in 1 file:

westram 2007-09-19 14:28 Rev.: 4773

- SAI_graphic now derived from AWT_nonDB_graphic
- fixed command()

2 lines of code changed in 1 file:

westram 2007-09-19 14:28 Rev.: 4772

- fixed command()
- GEN_graphic now derived from AWT_nonDB_graphic

2 lines of code changed in 1 file:

westram 2007-09-19 14:27 Rev.: 4771

- fixed includes and include-wrapper
- db-related functions of class AWT_graphic are pure-virtual now
- added class AWT_nonDB_graphic (implementing dummies for these functions)
- forward AW_key_code to command()
- added AWT_canvas::scroll flavour using Vector

64 lines of code changed in 1 file:

westram 2007-09-19 14:27 Rev.: 4770

- use shift() instead of shift_dx/dy()
- renamed tree_zoom()->zoom() + rewrote it
now zoom really zooms the region marked by mouse
- AWT_input_event():
. moved zoomhandler-code to functions
. cleanup
- added AWT_canvas::set_dragEndpoint()
to draw correct zoom-rectangle
- AWT_motion_event(): cleanup
- rewrote AWT_canvas-ctor
- added implementation of new class AWT_nonDB_graphic

345 lines of code changed in 1 file:

westram 2007-09-19 14:26 Rev.: 4769

- use set_offset() instead of shift_x/y()
- cleaned up AWT_print_tree_to_file()
- delete->free
- avoid 2 stack-buffers

55 lines of code changed in 1 file:

westram 2007-09-19 14:26 Rev.: 4768

- use box() instead of line()s

2 lines of code changed in 1 file:

westram 2007-09-19 14:25 Rev.: 4767

- AW_device fixes; use box() instead of line()s

6 lines of code changed in 1 file:

westram 2007-09-19 14:24 Rev.: 4766

- fixed changed calls to box()

3 lines of code changed in 1 file:

westram 2007-09-19 14:24 Rev.: 4765

- fixed changed rot_ct-access
- NT_emptybox() uses box()

24 lines of code changed in 1 file:

westram 2007-09-19 14:23 Rev.: 4764

- changed box()-interface (filled flag)

22 lines of code changed in 1 file:

westram 2007-09-19 14:22 Rev.: 4763

- box() got add. parameter for drawing filled/empty
- arc() wasn't used from other modules. behavior changed:
now it gets start angle and angle-length in degrees.
before arc always started at angle 0 with length -180.
- clear part clears one pixel more

50 lines of code changed in 1 file:

westram 2007-09-19 14:21 Rev.: 4762

- box() changed

1 lines of code changed in 1 file:

westram 2007-09-19 14:21 Rev.: 4761

- interface changed (arc,box)

8 lines of code changed in 1 file:

westram 2007-09-19 14:19 Rev.: 4760

- removed AW_matrix:: shift_dx/dy shift_x/y
- AW_clip_scale_stack only used locally
- changed func interface (box,arc)

75 lines of code changed in 1 file:

westram 2007-09-19 14:18 Rev.: 4759

- no extra click-area left/right of text
- return area of the clicked text in AW_clicked_text
- exact-hit is always better than near-hit
- of 2 near- or exact-hits, the min dist to text-center is taken
- added AW_clicked_line::distanceTo()
- added AW_getBestClick()

120 lines of code changed in 1 file:

westram 2007-09-19 14:17 Rev.: 4758

- base class AW_clicked_element (for AW_clicked_text + AW_clicked_line)
- AW_clicked_text contains exact text-area
- AW_matrix:
. uses Vector as offset
. member unscale (for faster rtransform)
. replaced shift_x/y by set_offset and shift_dx/dy by shift (weird names)
. transformations for Position/Vector/etc.
- AW_clip_scale_stack moved in AW_device.cxx
- AW_device:
. many convenience functions for Position/Vector/etc.
. changed interface for box, arc

135 lines of code changed in 1 file:

westram 2007-09-19 14:16 Rev.: 4757

- Position/Vector/etc. implemention

126 lines of code changed in 1 file:

westram 2007-09-19 14:15 Rev.: 4756

- Position/Vector/etc.

408 lines of code changed in 1 file:

August 2007 »

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