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1 lines of code changed in 1 file:
* PARS_main.cxx: - error if no tree selected
9 lines of code changed in 1 file:
* AWT_seq_protein.cxx: - AP_sequence_protein::set uses filters and simplify now
(resulting filtered sequence shown on terminal)
57 lines of code changed in 1 file:
* AWT_seq_dna.cxx: - rewrote code (to show resulting filtered sequence for testing)
63 lines of code changed in 1 file:
no crash if renaming selection to existing name
17 lines of code changed in 1 file:
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3 lines of code changed in 1 file:
aw_input does refit
1 lines of code changed in 1 file:
rename selections
45 lines of code changed in 1 file:
new layout and new labels
38 lines of code changed in 1 file:
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139 lines of code changed in 1 file:
* ad_transpro.cxx: - possibility to toggle usage of 'codon_start' and 'transl_table' against
manual setting of these values
261 lines of code changed in 1 file:
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60 lines of code changed in 7 files:
* arb_help.dtd: - prepared for new element LINK (not implemented yet, but used in some help files)
5 lines of code changed in 1 file:
* oldhelp/gene_info.hlp: - info about standard fields codon_start and transl_table
19 lines of code changed in 1 file:
* GEN_map.cxx: - GEN_extract_gene_2_pseudoSpecies uses complement of sequence if set in gene
- the fields codon_start and transl_table are copied from gene to gene-species
32 lines of code changed in 1 file:
* awt_pro_a_nucs.hxx: - AP_PRO_TYPE_AWAR renamed to AWAR_PROTEIN_TYPE
2 lines of code changed in 1 file:
* awt_codon_table.hxx: - added AWAR_PROTEIN_TYPE_bacterial_code_index
27 lines of code changed in 1 file:
* AWT_pro_a_nucs.cxx: - awt_pro_a_nucs_convert_init does not reinitialize if code_nr did not really change
8 lines of code changed in 1 file:
* AWT_codon_table.cxx: - added 4 new codon tables (and removed one that was duplicated)
- added AWT_embl_transl_table_2_arb_code_nr()
115 lines of code changed in 1 file:
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5 lines of code changed in 2 files:
* aw_window_Xm.hxx: - added correct_for_at_center_intern to AW_option_menu_struct
- added correct_for_at_center_intern to AW_toggle_field_struct
144 lines of code changed in 1 file:
* aw_at.hxx: - removed variable correct_for_at_center_intern (moved to AW_toggle_field_struct + AW_option_menu_struct)
1 lines of code changed in 1 file:
* AW_window.cxx: - initialize correct_for_at_center_intern (AW_toggle_field_struct + AW_option_menu_struct)
63 lines of code changed in 1 file:
* AW_status.cxx: - aw_message with buttons now create autosize-buttons (only if fixedSizeButtons is false)
10 lines of code changed in 1 file:
* AW_button.cxx: - update_toggle_field and update_option_menu use new variable correct_for_at_center_intern
(instead of same-named value from AW_at, because it did not work with self refreshing menus)
31 lines of code changed in 1 file:
help fixes (better link checking)
60 lines of code changed in 14 files:
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1 lines of code changed in 1 file:
* AWT_tree_cb.cxx: - removed old mark color menus
5 lines of code changed in 1 file:
resources for colorize
43 lines of code changed in 2 files:
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32 lines of code changed in 2 files:
AW_set_color_group changed parameters
9 lines of code changed in 2 files:
* NT_extern.cxx: - code cleanup
- colorize species
8 lines of code changed in 1 file:
- Colors<->Marks for genes
- ARB_HIDDEN (internal name for hidden items (currently genes))
66 lines of code changed in 6 files:
* AWT_query_and_functions.cxx: - item colorizer implemented / listed item colorizer modified
187 lines of code changed in 2 files:
* AWT_nds.cxx: - no komma and no space at start of NDS string
24 lines of code changed in 1 file:
fixes for NDEBUG (warnings, unused parameters variables, etc)
277 lines of code changed in 12 files:
make depend
630 lines of code changed in 43 files:
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3 lines of code changed in 1 file:
config admin window
27 lines of code changed in 1 file:
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11 lines of code changed in 3 files:
config admin added
327 lines of code changed in 9 files:
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4 lines of code changed in 2 files:
for exporting secondary structure to XFig application inorder to edit the same.
29 lines of code changed in 1 file:
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13 lines of code changed in 4 files:
* NT_extern.cxx: - moved print tree to TREE menu
- moved print sequences to sequence menu
8 lines of code changed in 1 file:
changes for prot-parsimony
388 lines of code changed in 9 files: