July 2004 Commit Log

Number of Commits:
66
Number of Active Developers:
4
westram 2004-07-29 17:40 Rev.: 3038

- each import filter match stores it's source line number (for error messages)

9 lines of code changed in 1 file:

westram 2004-07-29 17:39 Rev.: 3037

- error message about undefined variable in expandSetVariables
is written into result string and raised as error
- better and much more verboose error handling in awtc_read_data
- each import filter match stores it's source line number (for error messages)

71 lines of code changed in 1 file:

westram 2004-07-29 17:39 Rev.: 3036

- cosmetics

3 lines of code changed in 1 file:

westram 2004-07-18 18:03 Rev.: 3035

- dependencies updated

2 lines of code changed in 2 files:

westram 2004-07-18 18:01 Rev.: 3034

- added AWT_attributes.o

11 lines of code changed in 1 file:

westram 2004-07-18 18:01 Rev.: 3033

- uses AWT_gene_get_dominant_color instead of AW_find_color_group

3 lines of code changed in 1 file:

westram 2004-07-18 18:01 Rev.: 3032

- commented awt_mark_colored as obsolete

2 lines of code changed in 1 file:

westram 2004-07-18 18:00 Rev.: 3031

- uses AWT_species_get_dominant_color instead of AW_find_color_group

9 lines of code changed in 3 files:

westram 2004-07-18 17:58 Rev.: 3030

- main attribute interface

34 lines of code changed in 1 file:

westram 2004-07-18 17:58 Rev.: 3029

- faked attribute-interface (currently uses deprecated color groups)

40 lines of code changed in 1 file:

westram 2004-07-18 17:57 Rev.: 3028

- added awt_attributes.hxx

1 lines of code changed in 1 file:

westram 2004-07-15 20:35 Rev.: 3027

- added input field for bootstrap limit
- cosmetics

12 lines of code changed in 2 files:

westram 2004-07-15 20:34 Rev.: 3026

- added add_timed_callback_never_disabled

39 lines of code changed in 2 files:

westram 2004-07-15 20:33 Rev.: 3025

- all modal windows use add_timed_callback_never_disabled() to install their
listen callback - and the status window uses the same. Otherwise status
window gets blocked directly after the "KILL"-question box opens.
- status display tweaked
- added 'is_child' (may be used to detect whether any functions runs
in child (aka status window) or in parent)

45 lines of code changed in 1 file:

westram 2004-07-15 20:30 Rev.: 3024

- UP->SUB for bootstrap.hlp

1 lines of code changed in 1 file:

westram 2004-07-15 20:30 Rev.: 3023

- changed description of NJ-bootstrapping

11 lines of code changed in 1 file:

westram 2004-07-15 20:29 Rev.: 3022

- comment

2 lines of code changed in 1 file:

westram 2004-07-15 20:29 Rev.: 3021

- uses AWAR-definitions

22 lines of code changed in 2 files:

westram 2004-07-15 20:28 Rev.: 3020

- added parameter 'show_warnings' to PHMATRIX::load
- define some AWARs

4 lines of code changed in 1 file:

westram 2004-07-15 20:27 Rev.: 3019

- added parameter 'show_warnings' to PHMATRIX::load to avoid multiple
warnings when calculating bootstrap tree
- added parameter 'cl_show_warnings' to ph_calculate_matrix_cb
- made several functions static
- defines for AWARS + other cleanups
- bugfix: depending on _when_ user hit the KILL button while bootstrapping,
a tree was generated or not.

288 lines of code changed in 1 file:

westram 2004-07-14 11:23 Rev.: 3018

- updated prototypes

5 lines of code changed in 1 file:

westram 2004-07-14 11:22 Rev.: 3017

- assertion failure on GB_internal_error

1 lines of code changed in 1 file:

westram 2004-07-14 11:22 Rev.: 3016

- added hash statistic functions
- added prime number function
- hash automatically uses next prime number as its table size
- hashes print a warning if higher collision rates (>30%) occur (DEBUG only)

329 lines of code changed in 1 file:

westram 2004-07-14 11:21 Rev.: 3015

- awar awar_line_anz was undefined
- changed defaults for 'How many lines?' to save

14 lines of code changed in 1 file:

westram 2004-07-14 11:21 Rev.: 3014

- implemented GEN_jump_cb

101 lines of code changed in 1 file:

westram 2004-07-14 11:21 Rev.: 3013

- added GEN_graphic::get_device

1 lines of code changed in 1 file:

westram 2004-07-14 11:20 Rev.: 3012

- set origin of radial display to top (was at 3 o'clock)
- added smart_text / smart_line to track position of selected species
- getDrawGcs returns bool (indicating whether to draw or not)
- higher granularity in gene draw-order

113 lines of code changed in 1 file:

westram 2004-07-14 11:20 Rev.: 3011

- added member 'selected_range' + access function (used to track range of selected gene)

8 lines of code changed in 1 file:

westram 2004-07-14 11:20 Rev.: 3010

- skips + warns about genes with illegal positions

41 lines of code changed in 1 file:

westram 2004-07-14 11:20 Rev.: 3009

- added GEN_pos_begin_entry_name, GEN_pos_end_entry_name

116 lines of code changed in 2 files:

westram 2004-07-14 11:20 Rev.: 3008

- bugfix (undefined awar in mp_load_list)
- rewrote parsing of saved probe design result

107 lines of code changed in 1 file:

westram 2004-07-14 11:19 Rev.: 3007

- minor change

1 lines of code changed in 1 file:

westram 2004-07-14 11:19 Rev.: 3006

- now hash size for tprobe collection is calculated; uses much
smaller hashes for each species -> enhanced performance
- aligned probe design output; probe seq. before temp. decrease
- cosmetics

128 lines of code changed in 1 file:

westram 2004-07-14 11:19 Rev.: 3005

- truncation warning

11 lines of code changed in 1 file:

westram 2004-07-14 11:19 Rev.: 3004

- split Menu

4 lines of code changed in 1 file:

westram 2004-07-14 11:19 Rev.: 3003

- depends updated

2 lines of code changed in 1 file:

westram 2004-07-14 11:18 Rev.: 3002

- added GEN_tools.o

13 lines of code changed in 1 file:

westram 2004-07-14 11:17 Rev.: 3001

- marks internal error in AW_status with tag, added assertion

2 lines of code changed in 1 file:

westram 2004-07-14 11:17 Rev.: 3000

- cosmetics

26 lines of code changed in 1 file:

westram 2004-07-07 19:50 Rev.: 2999

- cosmetics
- no of hits is preceeded with '>' if match list was truncated
- last line of probe match list differs (normal, truncated, error)

53 lines of code changed in 1 file:

westram 2004-07-07 19:50 Rev.: 2998

- added MATCHES_TRUNCATED
- fixed key of GPOS (was same as POS)
- fixed key of PROBE_FIND_CONFIG (shared keys with PROBE_DESIGN_CONFIG)
- spelling

12 lines of code changed in 1 file:

westram 2004-07-07 19:50 Rev.: 2997

- increase no of max. matches to 100.000 (was 10.000)
- commented out unused macro

2 lines of code changed in 1 file:

westram 2004-07-07 19:49 Rev.: 2996

- set matches_truncated=1 if more matches than allowed

10 lines of code changed in 1 file:

westram 2004-07-07 19:49 Rev.: 2995

- all warnings changed into errors
- check used keys for _CNT, find_, copy_, create_, get_[NEXT|PRED] functions

36 lines of code changed in 1 file:

westram 2004-07-07 19:49 Rev.: 2994

- all warnings changed into errors

3 lines of code changed in 2 files:

westram 2004-07-07 19:49 Rev.: 2993

- added *.pa to dependencies

2 lines of code changed in 1 file:

westram 2004-07-07 19:48 Rev.: 2992

- abort if ERROR occurs
- fixed a bug (causing that no files were unlinked in case of error)
- formatted error print-out in gcc-style

23 lines of code changed in 1 file:

westram 2004-07-07 19:48 Rev.: 2991

- added array for names of generated files
- beautified

87 lines of code changed in 1 file:

westram 2004-07-07 19:48 Rev.: 2990

- all output to stderr

6 lines of code changed in 1 file:

westram 2004-07-07 19:44 Rev.: 2989

*** empty log message ***

1 lines of code changed in 1 file:

westram 2004-07-07 13:14 Rev.: 2988

- config.makefile issues are printed in error format

5 lines of code changed in 1 file:

westram 2004-07-07 13:10 Rev.: 2987

- added link to readseq

10 lines of code changed in 1 file:

westram 2004-07-07 13:06 Rev.: 2986

fixed link note

239 lines of code changed in 237 files:

westram 2004-07-06 18:26 Rev.: 2985

label rename (sort->weighted)

2 lines of code changed in 1 file:

westram 2004-07-06 18:26 Rev.: 2984

- fixed reverse-complement bug (headline parsing)

27 lines of code changed in 1 file:

westram 2004-07-06 18:25 Rev.: 2983

- auto match is aware of several other AWARS

25 lines of code changed in 1 file:

westram 2004-07-06 18:24 Rev.: 2982

- reduced MIN_PROBE_LENGTH (8->6)

1 lines of code changed in 1 file:

westram 2004-07-06 18:24 Rev.: 2981

- better errors instead of 'probe too short'
- fixed bug in probelength check

25 lines of code changed in 1 file:

westram 2004-07-06 11:11 Rev.: 2980

depends for MAUS

8 lines of code changed in 1 file:

westram 2004-07-06 10:30 Rev.: 2979

*** empty log message ***

14 lines of code changed in 1 file:

meierh 2004-07-02 09:28 Rev.: 2978

some bugs removed

68 lines of code changed in 1 file:

westram 2004-07-01 18:37 Rev.: 2977

*** empty log message ***

0 lines of code changed in 1 file:

westram 2004-07-01 18:37 Rev.: 2976

added MAUS interface prototype

186 lines of code changed in 6 files:

westram 2004-07-01 17:35 Rev.: 2975

- again increased hash size to 500000
- changed performance warning text

4 lines of code changed in 1 file:

richter 2004-07-01 17:26 Rev.: 2974

Maus filtering removed from GDE import menu

0 lines of code changed in 1 file:

baderk 2004-07-01 15:01 Rev.: 2973

Bugfix, now the correct upper limit for weighted mismatches is used.

1 lines of code changed in 1 file:

June 2004 »

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